RNA–Protein interactions for RNA: ENST00000594104.1

VRK3-208, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,197 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-208ENST00000594104 SMYD5Q6GMV2 418 aa14.07□□□□□ -0.16
VRK3-208ENST00000594104 KCNB2Q92953 911 aa14.07□□□□□ -0.16
VRK3-208ENST00000594104 LSG1Q9H089 658 aaKnown RBP14.07□□□□□ -0.16
VRK3-208ENST00000594104 DDX49Q9Y6V7 483 aaKnown RBP14.07□□□□□ -0.16
VRK3-208ENST00000594104 TTC5Q8N0Z6 440 aa14.07□□□□□ -0.16
VRK3-208ENST00000594104 NFATC2IPQ8NCF5 419 aa14.07□□□□□ -0.16
VRK3-208ENST00000594104 TM6SF1Q9BZW5 370 aa14.07□□□□□ -0.16
VRK3-208ENST00000594104 DIAPH3Q9NSV4 1193 aa14.07□□□□□ -0.16
VRK3-208ENST00000594104 LMBRD1Q9NUN5 540 aa14.07□□□□□ -0.16
VRK3-208ENST00000594104 PALD1Q9ULE6 856 aa14.07□□□□□ -0.16
VRK3-208ENST00000594104 NEURL1BA8MQ27 555 aa14.06□□□□□ -0.16
VRK3-208ENST00000594104 GCKRQ14397 625 aa14.06□□□□□ -0.16
VRK3-208ENST00000594104 CWF19L2Q2TBE0 894 aaKnown RBP14.06□□□□□ -0.16
VRK3-208ENST00000594104 ZGPATQ8N5A5 531 aaKnown RBP14.06□□□□□ -0.16
VRK3-208ENST00000594104 SUCLG2Q96I99 432 aa14.06□□□□□ -0.16
VRK3-208ENST00000594104 BRD1O95696 1058 aa14.06□□□□□ -0.16
VRK3-208ENST00000594104 IGKV5-2P06315 115 aa14.06□□□□□ -0.16
VRK3-208ENST00000594104 ZNF445P59923 1031 aa14.06□□□□□ -0.16
VRK3-208ENST00000594104 TICAM2Q86XR7 235 aa14.06□□□□□ -0.16
VRK3-208ENST00000594104 SNRKQ9NRH2 765 aa14.06□□□□□ -0.16
VRK3-208ENST00000594104 TRIM66O15016 1216 aa14.05□□□□□ -0.16
VRK3-208ENST00000594104 MEGF6O75095 1541 aa14.05□□□□□ -0.16
VRK3-208ENST00000594104 MCTP1Q6DN14 999 aa14.05□□□□□ -0.16
VRK3-208ENST00000594104 ANKRD13DQ6ZTN6 518 aa14.05□□□□□ -0.16
VRK3-208ENST00000594104 KAZALD1Q96I82 304 aa14.05□□□□□ -0.16
VRK3-208ENST00000594104 ZDHHC9Q9Y397 364 aa14.05□□□□□ -0.16
VRK3-208ENST00000594104 PRAMEF22A3QJZ6 481 aa14.05□□□□□ -0.16
VRK3-208ENST00000594104 CDK11BP21127 795 aaKnown RBP14.05□□□□□ -0.16
VRK3-208ENST00000594104 XAGE3Q8WTP9 111 aa14.05□□□□□ -0.16
VRK3-208ENST00000594104 ZNF496Q96IT1 587 aaPredicted RBP14.05□□□□□ -0.16
VRK3-208ENST00000594104 BICC1Q9H694 974 aaKnown RBP14.05□□□□□ -0.16
VRK3-208ENST00000594104 SNX14Q9Y5W7 946 aa14.05□□□□□ -0.16
VRK3-208ENST00000594104 RGPD5Q99666 1765 aa14.04□□□□□ -0.16
VRK3-208ENST00000594104 MBD3O95983 291 aa14.04□□□□□ -0.16
VRK3-208ENST00000594104 COPS6Q7L5N1 327 aa14.04□□□□□ -0.16
VRK3-208ENST00000594104 LRP10Q7Z4F1 713 aa14.04□□□□□ -0.16
VRK3-208ENST00000594104 AACSQ86V21 672 aa14.04□□□□□ -0.16
VRK3-208ENST00000594104 COPRSQ9NQ92 184 aa14.04□□□□□ -0.16
VRK3-208ENST00000594104 PKD1L3Q7Z443 1732 aa14.04□□□□□ -0.16
VRK3-208ENST00000594104 CYP27B1O15528 508 aa14.03□□□□□ -0.16
VRK3-208ENST00000594104 CABP4P57796 275 aa14.03□□□□□ -0.16
VRK3-208ENST00000594104 WDR33Q9C0J8 1336 aaKnown RBP14.03□□□□□ -0.16
VRK3-208ENST00000594104 ERVV-2B6SEH9 535 aa14.03□□□□□ -0.16
VRK3-208ENST00000594104 SASH1O94885 1247 aa14.03□□□□□ -0.16
VRK3-208ENST00000594104 AIMP1Q12904 312 aaKnown RBP14.03□□□□□ -0.16
VRK3-208ENST00000594104 SLC39A6Q13433 755 aa14.03□□□□□ -0.16
VRK3-208ENST00000594104 ZSCAN31Q96LW9 406 aaPredicted RBP14.03□□□□□ -0.16
VRK3-208ENST00000594104 TTC14Q96N46 770 aa14.03□□□□□ -0.16
VRK3-208ENST00000594104 LIMCH1Q9UPQ0 1083 aa14.03□□□□□ -0.16
VRK3-208ENST00000594104 RABL6Q3YEC7 729 aaPredicted RBP14.02□□□□□ -0.16
VRK3-208ENST00000594104 PLBD2Q8NHP8 589 aa14.02□□□□□ -0.16
VRK3-208ENST00000594104 HMGB1P09429 215 aaKnown RBP14.02□□□□□ -0.17
VRK3-208ENST00000594104 PA2G4Q9UQ80 394 aaKnown RBP14.02□□□□□ -0.17
VRK3-208ENST00000594104 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.02□□□□□ -0.17
VRK3-208ENST00000594104 PARP4Q9UKK3 1724 aaKnown RBP14.01□□□□□ -0.17
VRK3-208ENST00000594104 A6NJR5 290 aa14.01□□□□□ -0.17
VRK3-208ENST00000594104 ONECUT3O60422 494 aaPredicted RBP14.01□□□□□ -0.17
VRK3-208ENST00000594104 VPS53Q5VIR6 699 aa14.01□□□□□ -0.17
VRK3-208ENST00000594104 CWC27Q6UX04 472 aaKnown RBP14.01□□□□□ -0.17
VRK3-208ENST00000594104 IL25Q9H293 177 aa14.01□□□□□ -0.17
VRK3-208ENST00000594104 RFX7Q2KHR2 1363 aa14.01□□□□□ -0.17
VRK3-208ENST00000594104 MAP4K4O95819 1239 aaPredicted RBP14□□□□□ -0.17
VRK3-208ENST00000594104 PKP1Q13835 747 aa14□□□□□ -0.17
VRK3-208ENST00000594104 EAF2Q96CJ1 260 aaPredicted RBP14□□□□□ -0.17
VRK3-208ENST00000594104 MYD88Q99836 296 aa14□□□□□ -0.17
VRK3-208ENST00000594104 SH2B1Q9NRF2 756 aaPredicted RBP14□□□□□ -0.17
VRK3-208ENST00000594104 AK9Q5TCS8 1911 aa14□□□□□ -0.17
VRK3-208ENST00000594104 WDR17Q8IZU2 1322 aa14□□□□□ -0.17
VRK3-208ENST00000594104 PCDH11XQ9BZA7 1347 aa14□□□□□ -0.17
VRK3-208ENST00000594104 PCDH11YQ9BZA8 1340 aa14□□□□□ -0.17
VRK3-208ENST00000594104 ZKSCAN1P17029 563 aaPredicted RBP14□□□□□ -0.17
VRK3-208ENST00000594104 GAS2L3Q86XJ1 694 aa14□□□□□ -0.17
VRK3-208ENST00000594104 ALDH8A1Q9H2A2 487 aaPredicted RBP14□□□□□ -0.17
VRK3-208ENST00000594104 ZSWIM6Q9HCJ5 1215 aa14□□□□□ -0.17
VRK3-208ENST00000594104 STRCP1A6NGW2 1772 aa14□□□□□ -0.17
VRK3-208ENST00000594104 PRPF40AO75400 957 aaKnown RBP13.99□□□□□ -0.17
VRK3-208ENST00000594104 HSP90B1P14625 803 aaKnown RBP13.99□□□□□ -0.17
VRK3-208ENST00000594104 MYL6BP14649 208 aa13.99□□□□□ -0.17
VRK3-208ENST00000594104 PSMA5P28066 241 aa13.99□□□□□ -0.17
VRK3-208ENST00000594104 NECTIN1Q15223 517 aa13.99□□□□□ -0.17
VRK3-208ENST00000594104 ZCRB1Q8TBF4 217 aaKnown RBP13.99□□□□□ -0.17
VRK3-208ENST00000594104 ANP32BQ92688 251 aaKnown RBP13.99□□□□□ -0.17
VRK3-208ENST00000594104 UPF3BQ9BZI7 483 aaKnown RBP13.99□□□□□ -0.17
VRK3-208ENST00000594104 USP16Q9Y5T5 823 aa13.99□□□□□ -0.17
VRK3-208ENST00000594104 SPDYE2BA6NHP3 402 aa13.99□□□□□ -0.17
VRK3-208ENST00000594104 SPDYE6P0CI01 402 aa13.99□□□□□ -0.17
VRK3-208ENST00000594104 ATP5JP18859 108 aa13.99□□□□□ -0.17
VRK3-208ENST00000594104 SPDYE2Q495Y8 402 aa13.99□□□□□ -0.17
VRK3-208ENST00000594104 MAP4K1Q92918 833 aa13.99□□□□□ -0.17
VRK3-208ENST00000594104 CYP46A1Q9Y6A2 500 aa13.99□□□□□ -0.17
VRK3-208ENST00000594104 C5P01031 1676 aa13.98□□□□□ -0.17
VRK3-208ENST00000594104 SOS2Q07890 1332 aaPredicted RBP13.98□□□□□ -0.17
VRK3-208ENST00000594104 CCDC171Q6TFL3 1326 aa13.98□□□□□ -0.17
VRK3-208ENST00000594104 RFX5P48382 616 aaPredicted RBP13.98□□□□□ -0.17
VRK3-208ENST00000594104 CHRNA2Q15822 529 aa13.98□□□□□ -0.17
VRK3-208ENST00000594104 RNF20Q5VTR2 975 aa13.98□□□□□ -0.17
VRK3-208ENST00000594104 CABLES1Q8TDN4 633 aa13.98□□□□□ -0.17
VRK3-208ENST00000594104 CCDC173Q0VFZ6 552 aa13.98□□□□□ -0.17
VRK3-208ENST00000594104 ZSCAN23Q3MJ62 389 aa13.98□□□□□ -0.17
VRK3-208ENST00000594104 TSGA10IPQ3SY00 556 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms