RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 SRCIN1Q9C0H9 1055 aa16.93■□□□□ 0.3
VMP1-217ENST00000593168 MAP3K2Q9Y2U5 619 aa16.93■□□□□ 0.3
VMP1-217ENST00000593168 TJP1Q07157 1748 aa16.93■□□□□ 0.3
VMP1-217ENST00000593168 ALDH1L1O75891 902 aa16.92■□□□□ 0.3
VMP1-217ENST00000593168 RFC4P35249 363 aa16.92■□□□□ 0.3
VMP1-217ENST00000593168 AIMP1Q12904 312 aaKnown RBP16.92■□□□□ 0.3
VMP1-217ENST00000593168 RIC3Q7Z5B4 369 aa16.92■□□□□ 0.3
VMP1-217ENST00000593168 RWDD1Q9H446 243 aaPredicted RBP16.92■□□□□ 0.3
VMP1-217ENST00000593168 PARP3Q9Y6F1 533 aa16.92■□□□□ 0.3
VMP1-217ENST00000593168 SBF1O95248 1867 aa16.92■□□□□ 0.3
VMP1-217ENST00000593168 IBTKQ9P2D0 1353 aaPredicted RBP16.91■□□□□ 0.3
VMP1-217ENST00000593168 HDAC1Q13547 482 aaPredicted RBP16.91■□□□□ 0.3
VMP1-217ENST00000593168 C9orf131Q5VYM1 1079 aa16.91■□□□□ 0.3
VMP1-217ENST00000593168 PLBD2Q8NHP8 589 aa16.91■□□□□ 0.3
VMP1-217ENST00000593168 IGHDP01880 384 aa16.9■□□□□ 0.3
VMP1-217ENST00000593168 GNAI3P08754 354 aa16.9■□□□□ 0.3
VMP1-217ENST00000593168 PIP4K2AP48426 406 aaPredicted RBP16.9■□□□□ 0.3
VMP1-217ENST00000593168 HTRA3P83110 453 aa16.9■□□□□ 0.3
VMP1-217ENST00000593168 LINS1Q8NG48 757 aa16.9■□□□□ 0.3
VMP1-217ENST00000593168 RBM46Q8TBY0 533 aaKnown RBP16.9■□□□□ 0.3
VMP1-217ENST00000593168 MEIS3Q99687 375 aa16.9■□□□□ 0.3
VMP1-217ENST00000593168 METTL22Q9BUU2 404 aaPredicted RBP16.9■□□□□ 0.3
VMP1-217ENST00000593168 SRP68Q9UHB9 627 aaKnown RBP16.89■□□□□ 0.29
VMP1-217ENST00000593168 TNRC6CQ9HCJ0 1690 aaKnown RBP16.88■□□□□ 0.29
VMP1-217ENST00000593168 IL6STP40189 918 aaPredicted RBP16.88■□□□□ 0.29
VMP1-217ENST00000593168 DDR1Q08345 913 aa16.88■□□□□ 0.29
VMP1-217ENST00000593168 NEXNQ0ZGT2 675 aa16.88■□□□□ 0.29
VMP1-217ENST00000593168 RPAP2Q8IXW5 612 aaPredicted RBP16.88■□□□□ 0.29
VMP1-217ENST00000593168 USP44Q9H0E7 712 aa16.88■□□□□ 0.29
VMP1-217ENST00000593168 PIM2Q9P1W9 311 aa16.88■□□□□ 0.29
VMP1-217ENST00000593168 GNAI2P04899 355 aa16.87■□□□□ 0.29
VMP1-217ENST00000593168 CRKLP46109 303 aaKnown RBP16.87■□□□□ 0.29
VMP1-217ENST00000593168 TTLL7Q6ZT98 887 aa16.87■□□□□ 0.29
VMP1-217ENST00000593168 ZBTB1Q9Y2K1 713 aa16.87■□□□□ 0.29
VMP1-217ENST00000593168 DALRD3Q5D0E6 543 aaKnown RBP16.86■□□□□ 0.29
VMP1-217ENST00000593168 INTS5Q6P9B9 1019 aaKnown RBP16.86■□□□□ 0.29
VMP1-217ENST00000593168 C1orf115Q9H7X2 142 aa16.86■□□□□ 0.29
VMP1-217ENST00000593168 HDAC5Q9UQL6 1122 aa16.86■□□□□ 0.29
VMP1-217ENST00000593168 USP42Q9H9J4 1324 aaKnown RBP16.86■□□□□ 0.29
VMP1-217ENST00000593168 AFDNP55196 1824 aaKnown RBP16.86■□□□□ 0.29
VMP1-217ENST00000593168 IGKV5-2P06315 115 aa16.85■□□□□ 0.29
VMP1-217ENST00000593168 UBTFL1P0CB47 393 aaPredicted RBP16.85■□□□□ 0.29
VMP1-217ENST00000593168 CHRNA5P30532 468 aa16.85■□□□□ 0.29
VMP1-217ENST00000593168 EIF5P55010 431 aaKnown RBP16.85■□□□□ 0.29
VMP1-217ENST00000593168 C16orf71Q8IYS4 520 aaPredicted RBP16.85■□□□□ 0.29
VMP1-217ENST00000593168 ANKRD44Q8N8A2 993 aa16.85■□□□□ 0.29
VMP1-217ENST00000593168 KLRG1Q96E93 195 aa16.85■□□□□ 0.29
VMP1-217ENST00000593168 MYD88Q99836 296 aa16.85■□□□□ 0.29
VMP1-217ENST00000593168 RNF181Q9P0P0 153 aa16.85■□□□□ 0.29
VMP1-217ENST00000593168 NEURL1BA8MQ27 555 aa16.84■□□□□ 0.29
VMP1-217ENST00000593168 FSTL1Q12841 308 aa16.84■□□□□ 0.29
VMP1-217ENST00000593168 CEP85Q6P2H3 762 aa16.84■□□□□ 0.29
VMP1-217ENST00000593168 KIF6Q6ZMV9 814 aa16.84■□□□□ 0.29
VMP1-217ENST00000593168 SIRT2Q8IXJ6 389 aa16.84■□□□□ 0.29
VMP1-217ENST00000593168 RRAGCQ9HB90 399 aa16.84■□□□□ 0.29
VMP1-217ENST00000593168 UTYO14607 1347 aa16.84■□□□□ 0.29
VMP1-217ENST00000593168 CWF19L2Q2TBE0 894 aaKnown RBP16.83■□□□□ 0.28
VMP1-217ENST00000593168 NPM2Q86SE8 214 aaKnown RBP16.83■□□□□ 0.28
VMP1-217ENST00000593168 SMC5Q8IY18 1101 aa16.83■□□□□ 0.28
VMP1-217ENST00000593168 JMYQ8N9B5 988 aa16.83■□□□□ 0.28
VMP1-217ENST00000593168 DLEC1Q9Y238 1755 aa16.82■□□□□ 0.28
VMP1-217ENST00000593168 ARFGEF2Q9Y6D5 1785 aa16.82■□□□□ 0.28
VMP1-217ENST00000593168 MAP3K15Q6ZN16 1313 aa16.82■□□□□ 0.28
VMP1-217ENST00000593168 ERVV-1B6SEH8 477 aa16.82■□□□□ 0.28
VMP1-217ENST00000593168 POLRMTO00411 1230 aaKnown RBP16.82■□□□□ 0.28
VMP1-217ENST00000593168 TM4SF1P30408 202 aa16.82■□□□□ 0.28
VMP1-217ENST00000593168 GCKRQ14397 625 aa16.82■□□□□ 0.28
VMP1-217ENST00000593168 COL13A1Q5TAT6 717 aaPredicted RBP16.82■□□□□ 0.28
VMP1-217ENST00000593168 C9orf78Q9NZ63 289 aaPredicted RBP16.82■□□□□ 0.28
VMP1-217ENST00000593168 CCDC88AQ3V6T2 1871 aa16.82■□□□□ 0.28
VMP1-217ENST00000593168 GRM8O00222 908 aa16.81■□□□□ 0.28
VMP1-217ENST00000593168 HMMRO75330 724 aa16.81■□□□□ 0.28
VMP1-217ENST00000593168 NBPF7P0C2Y1 421 aaPredicted RBP16.81■□□□□ 0.28
VMP1-217ENST00000593168 ATP8B2P98198 1209 aa16.81■□□□□ 0.28
VMP1-217ENST00000593168 TRIM28Q13263 835 aaKnown RBP16.81■□□□□ 0.28
VMP1-217ENST00000593168 TCIRG1Q13488 830 aa16.81■□□□□ 0.28
VMP1-217ENST00000593168 GCC1Q96CN9 775 aa16.81■□□□□ 0.28
VMP1-217ENST00000593168 ZBTB3Q9H5J0 574 aa16.81■□□□□ 0.28
VMP1-217ENST00000593168 ZNF330Q9Y3S2 320 aaPredicted RBP16.81■□□□□ 0.28
VMP1-217ENST00000593168 LRRFIP2Q9Y608 721 aaKnown RBP16.81■□□□□ 0.28
VMP1-217ENST00000593168 NRXN2Q9P2S2 1712 aa16.81■□□□□ 0.28
VMP1-217ENST00000593168 RASSF7Q02833 373 aa16.8■□□□□ 0.28
VMP1-217ENST00000593168 HSP90AB3PQ58FF7 597 aa16.8■□□□□ 0.28
VMP1-217ENST00000593168 GIGYF2Q6Y7W6 1299 aaKnown RBP16.8■□□□□ 0.28
VMP1-217ENST00000593168 ISCA1Q9BUE6 129 aa16.8■□□□□ 0.28
VMP1-217ENST00000593168 TIAM2Q8IVF5 1701 aa16.79■□□□□ 0.28
VMP1-217ENST00000593168 ATP5J2-PTCD1G3V325 749 aa16.79■□□□□ 0.28
VMP1-217ENST00000593168 USPL1Q5W0Q7 1092 aa16.79■□□□□ 0.28
VMP1-217ENST00000593168 DZIP3Q86Y13 1208 aaKnown RBP16.79■□□□□ 0.28
VMP1-217ENST00000593168 CCDC191Q8NCU4 936 aa16.79■□□□□ 0.28
VMP1-217ENST00000593168 A0A087WZG4 1122 aa16.78■□□□□ 0.28
VMP1-217ENST00000593168 PRELPP51888 382 aa16.78■□□□□ 0.28
VMP1-217ENST00000593168 DCTPP1Q9H773 170 aa16.78■□□□□ 0.28
VMP1-217ENST00000593168 CWC25Q9NXE8 425 aaPredicted RBP16.78■□□□□ 0.28
VMP1-217ENST00000593168 PCNTO95613 3336 aa16.78■□□□□ 0.28
VMP1-217ENST00000593168 RGL2O15211 777 aa16.77■□□□□ 0.28
VMP1-217ENST00000593168 MTX1Q13505 466 aa16.77■□□□□ 0.28
VMP1-217ENST00000593168 COL15A1P39059 1388 aa16.77■□□□□ 0.27
VMP1-217ENST00000593168 H7C1W4 665 aa16.76■□□□□ 0.27
VMP1-217ENST00000593168 ZPR1O75312 459 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms