RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 NLGN1Q8N2Q7 840 aa11.74□□□□□ -0.53
LIG3-216ENST00000593099 CPSF1Q10570 1443 aaKnown RBP11.74□□□□□ -0.53
LIG3-216ENST00000593099 HCLS1P14317 486 aaPredicted RBP11.74□□□□□ -0.53
LIG3-216ENST00000593099 CRACR2BQ8N4Y2 399 aaPredicted RBP11.74□□□□□ -0.53
LIG3-216ENST00000593099 PDE8AO60658 829 aa11.74□□□□□ -0.53
LIG3-216ENST00000593099 STK11IPQ8N1F8 1099 aa11.74□□□□□ -0.53
LIG3-216ENST00000593099 SNRKQ9NRH2 765 aa11.74□□□□□ -0.53
LIG3-216ENST00000593099 SMC3Q9UQE7 1217 aa11.74□□□□□ -0.53
LIG3-216ENST00000593099 XBP1P17861 261 aa11.73□□□□□ -0.53
LIG3-216ENST00000593099 ZNF804AQ7Z570 1209 aa11.73□□□□□ -0.53
LIG3-216ENST00000593099 PLEKHF1Q96S99 279 aa11.73□□□□□ -0.53
LIG3-216ENST00000593099 USP19O94966 1318 aa11.73□□□□□ -0.53
LIG3-216ENST00000593099 BAG3O95817 575 aa11.73□□□□□ -0.53
LIG3-216ENST00000593099 TCIRG1Q13488 830 aa11.73□□□□□ -0.53
LIG3-216ENST00000593099 FOXD4L5Q5VV16 416 aaPredicted RBP11.73□□□□□ -0.53
LIG3-216ENST00000593099 FOXD4L4Q8WXT5 416 aaPredicted RBP11.73□□□□□ -0.53
LIG3-216ENST00000593099 DEPDC5O75140 1603 aa11.73□□□□□ -0.53
LIG3-216ENST00000593099 CRKLP46109 303 aaKnown RBP11.72□□□□□ -0.53
LIG3-216ENST00000593099 OGFOD1Q8N543 542 aa11.72□□□□□ -0.53
LIG3-216ENST00000593099 ZGPATQ8N5A5 531 aaKnown RBP11.72□□□□□ -0.53
LIG3-216ENST00000593099 HDAC9Q9UKV0 1011 aa11.72□□□□□ -0.53
LIG3-216ENST00000593099 CRB1P82279 1406 aa11.72□□□□□ -0.53
LIG3-216ENST00000593099 SLIT1O75093 1534 aa11.72□□□□□ -0.53
LIG3-216ENST00000593099 CYP27B1O15528 508 aa11.72□□□□□ -0.53
LIG3-216ENST00000593099 PIGBQ92521 554 aa11.72□□□□□ -0.53
LIG3-216ENST00000593099 IL6STP40189 918 aaPredicted RBP11.72□□□□□ -0.53
LIG3-216ENST00000593099 ARHGAP23Q9P227 1491 aa11.72□□□□□ -0.53
LIG3-216ENST00000593099 GOLIM4O00461 696 aa11.72□□□□□ -0.53
LIG3-216ENST00000593099 PTMAP06454 111 aaKnown RBP11.72□□□□□ -0.53
LIG3-216ENST00000593099 IMMTQ16891 758 aaKnown RBP11.72□□□□□ -0.53
LIG3-216ENST00000593099 IPO9Q96P70 1041 aaKnown RBP11.72□□□□□ -0.53
LIG3-216ENST00000593099 UBAC1Q9BSL1 405 aa11.72□□□□□ -0.53
LIG3-216ENST00000593099 NAPBQ9H115 298 aa11.72□□□□□ -0.53
LIG3-216ENST00000593099 MYO1BO43795 1136 aa11.71□□□□□ -0.53
LIG3-216ENST00000593099 NEK4P51957 841 aa11.71□□□□□ -0.53
LIG3-216ENST00000593099 SYAP1Q96A49 352 aaPredicted RBP11.71□□□□□ -0.53
LIG3-216ENST00000593099 BRMS1Q9HCU9 246 aa11.71□□□□□ -0.53
LIG3-216ENST00000593099 TMEM131LA2VDJ0 1609 aa11.71□□□□□ -0.53
LIG3-216ENST00000593099 NRXN1Q9ULB1 1477 aa11.71□□□□□ -0.53
LIG3-216ENST00000593099 GSTO1P78417 241 aa11.71□□□□□ -0.53
LIG3-216ENST00000593099 KRT32Q14532 448 aa11.71□□□□□ -0.53
LIG3-216ENST00000593099 CYP46A1Q9Y6A2 500 aa11.71□□□□□ -0.53
LIG3-216ENST00000593099 HMGB1P09429 215 aaKnown RBP11.71□□□□□ -0.54
LIG3-216ENST00000593099 MSL1Q68DK7 614 aa11.71□□□□□ -0.54
LIG3-216ENST00000593099 QRICH2Q9H0J4 1663 aa11.71□□□□□ -0.54
LIG3-216ENST00000593099 EVI5LQ96CN4 794 aa11.71□□□□□ -0.54
LIG3-216ENST00000593099 MINDY4BA8MYZ0 360 aa11.7□□□□□ -0.54
LIG3-216ENST00000593099 TTLL12Q14166 644 aaPredicted RBP11.7□□□□□ -0.54
LIG3-216ENST00000593099 HELBQ8NG08 1087 aaPredicted RBP11.7□□□□□ -0.54
LIG3-216ENST00000593099 BICC1Q9H694 974 aaKnown RBP11.7□□□□□ -0.54
LIG3-216ENST00000593099 SLC4A3P48751 1232 aa11.7□□□□□ -0.54
LIG3-216ENST00000593099 PA2G4Q9UQ80 394 aaKnown RBP11.7□□□□□ -0.54
LIG3-216ENST00000593099 ZBTB1Q9Y2K1 713 aa11.7□□□□□ -0.54
LIG3-216ENST00000593099 U3KPZ7 1027 aaPredicted RBP11.7□□□□□ -0.54
LIG3-216ENST00000593099 GOLGA6L6A8MZA4 724 aa11.7□□□□□ -0.54
LIG3-216ENST00000593099 MCM2P49736 904 aa11.7□□□□□ -0.54
LIG3-216ENST00000593099 GCKRQ14397 625 aa11.7□□□□□ -0.54
LIG3-216ENST00000593099 MKNK2Q9HBH9 465 aa11.7□□□□□ -0.54
LIG3-216ENST00000593099 PALLDQ8WX93 1383 aa11.7□□□□□ -0.54
LIG3-216ENST00000593099 OVOS2A0A0G2JMS6 1433 aa11.7□□□□□ -0.54
LIG3-216ENST00000593099 OVOS2A0A0J9YW53 1432 aa11.7□□□□□ -0.54
LIG3-216ENST00000593099 OVOS2Q6IE36 1432 aa11.7□□□□□ -0.54
LIG3-216ENST00000593099 WDHD1O75717 1129 aaPredicted RBP11.69□□□□□ -0.54
LIG3-216ENST00000593099 PDE6BP35913 854 aa11.69□□□□□ -0.54
LIG3-216ENST00000593099 HDAC1Q13547 482 aaPredicted RBP11.69□□□□□ -0.54
LIG3-216ENST00000593099 RABEP1Q15276 862 aa11.69□□□□□ -0.54
LIG3-216ENST00000593099 BLOC1S2Q6QNY1 142 aa11.69□□□□□ -0.54
LIG3-216ENST00000593099 IQSEC3Q9UPP2 1182 aaPredicted RBP11.69□□□□□ -0.54
LIG3-216ENST00000593099 CPS1P31327 1500 aa11.69□□□□□ -0.54
LIG3-216ENST00000593099 CCDC69A6NI79 296 aa11.69□□□□□ -0.54
LIG3-216ENST00000593099 ITGA6P23229 1130 aa11.69□□□□□ -0.54
LIG3-216ENST00000593099 TTLL7Q6ZT98 887 aa11.69□□□□□ -0.54
LIG3-216ENST00000593099 PATL2C9JE40 543 aaKnown RBP11.69□□□□□ -0.54
LIG3-216ENST00000593099 ANKRD1Q15327 319 aa11.69□□□□□ -0.54
LIG3-216ENST00000593099 USPL1Q5W0Q7 1092 aa11.69□□□□□ -0.54
LIG3-216ENST00000593099 ZNF526Q8TF50 670 aaPredicted RBP11.69□□□□□ -0.54
LIG3-216ENST00000593099 VPS37CA5D8V6 355 aaPredicted RBP11.69□□□□□ -0.54
LIG3-216ENST00000593099 ALDH1B1P30837 517 aa11.69□□□□□ -0.54
LIG3-216ENST00000593099 CCDC24Q8N4L8 307 aa11.69□□□□□ -0.54
LIG3-216ENST00000593099 MAP3K15Q6ZN16 1313 aa11.68□□□□□ -0.54
LIG3-216ENST00000593099 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.68□□□□□ -0.54
LIG3-216ENST00000593099 MPHOSPH10O00566 681 aaKnown RBP11.68□□□□□ -0.54
LIG3-216ENST00000593099 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.68□□□□□ -0.54
LIG3-216ENST00000593099 EYA2O00167 538 aa11.68□□□□□ -0.54
LIG3-216ENST00000593099 RIMBP2O15034 1052 aa11.68□□□□□ -0.54
LIG3-216ENST00000593099 TNNQ9UQP3 1299 aa11.68□□□□□ -0.54
LIG3-216ENST00000593099 NRDCO43847 1150 aa11.68□□□□□ -0.54
LIG3-216ENST00000593099 CEP85Q6P2H3 762 aa11.68□□□□□ -0.54
LIG3-216ENST00000593099 MST1RQ04912 1400 aa11.67□□□□□ -0.54
LIG3-216ENST00000593099 UFL1O94874 794 aa11.67□□□□□ -0.54
LIG3-216ENST00000593099 RLBP1P12271 317 aa11.67□□□□□ -0.54
LIG3-216ENST00000593099 MROH1Q8NDA8 1641 aa11.67□□□□□ -0.54
LIG3-216ENST00000593099 KCNQ4P56696 695 aa11.67□□□□□ -0.54
LIG3-216ENST00000593099 ZNF444Q8N0Y2 327 aaPredicted RBP11.67□□□□□ -0.54
LIG3-216ENST00000593099 GGA1Q9UJY5 639 aa11.67□□□□□ -0.54
LIG3-216ENST00000593099 MED14O60244 1454 aa11.67□□□□□ -0.54
LIG3-216ENST00000593099 HEG1Q9ULI3 1381 aa11.67□□□□□ -0.54
LIG3-216ENST00000593099 BCORL1Q5H9F3 1711 aa11.67□□□□□ -0.54
LIG3-216ENST00000593099 HLA-DOAP06340 250 aa11.67□□□□□ -0.54
LIG3-216ENST00000593099 ZFYP08048 801 aaPredicted RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms