RNA–Protein interactions for RNA: ENST00000591534.5

BRCA1-226, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-226ENST00000591534 RASSF7Q02833 373 aa12.57□□□□□ -0.4
BRCA1-226ENST00000591534 CNGB1Q14028 1251 aaPredicted RBP12.57□□□□□ -0.4
BRCA1-226ENST00000591534 DSG2Q14126 1118 aa12.57□□□□□ -0.4
BRCA1-226ENST00000591534 IL17REQ8NFR9 667 aa12.57□□□□□ -0.4
BRCA1-226ENST00000591534 CNKSR1Q969H4 720 aa12.57□□□□□ -0.4
BRCA1-226ENST00000591534 OTUD5Q96G74 571 aa12.57□□□□□ -0.4
BRCA1-226ENST00000591534 ZNF652Q9Y2D9 606 aa12.57□□□□□ -0.4
BRCA1-226ENST00000591534 TBC1D9BQ66K14 1250 aa12.56□□□□□ -0.4
BRCA1-226ENST00000591534 CNBD1Q8NA66 436 aa12.56□□□□□ -0.4
BRCA1-226ENST00000591534 TBC1D2BQ9UPU7 963 aa12.56□□□□□ -0.4
BRCA1-226ENST00000591534 BOLA1Q9Y3E2 137 aa12.56□□□□□ -0.4
BRCA1-226ENST00000591534 BRCA1P38398 1863 aaKnown RBP12.55□□□□□ -0.4
BRCA1-226ENST00000591534 NEFMP07197 916 aa12.55□□□□□ -0.4
BRCA1-226ENST00000591534 IER5LQ5T953 404 aa12.55□□□□□ -0.4
BRCA1-226ENST00000591534 CLEC4GQ6UXB4 293 aa12.55□□□□□ -0.4
BRCA1-226ENST00000591534 METRNQ9UJH8 293 aa12.55□□□□□ -0.4
BRCA1-226ENST00000591534 SNRPA1P09661 255 aaKnown RBP12.54□□□□□ -0.4
BRCA1-226ENST00000591534 PLCG2P16885 1265 aa12.54□□□□□ -0.4
BRCA1-226ENST00000591534 PRKAR2BP31323 418 aa12.54□□□□□ -0.4
BRCA1-226ENST00000591534 ERFEQ4G0M1 354 aa12.54□□□□□ -0.4
BRCA1-226ENST00000591534 STYK1Q6J9G0 422 aa12.54□□□□□ -0.4
BRCA1-226ENST00000591534 PRR5LQ6MZQ0 368 aa12.54□□□□□ -0.4
BRCA1-226ENST00000591534 DZIP3Q86Y13 1208 aaKnown RBP12.54□□□□□ -0.4
BRCA1-226ENST00000591534 JMYQ8N9B5 988 aa12.54□□□□□ -0.4
BRCA1-226ENST00000591534 CEMIPQ8WUJ3 1361 aa12.54□□□□□ -0.4
BRCA1-226ENST00000591534 TULP1O00294 542 aaPredicted RBP12.53□□□□□ -0.4
BRCA1-226ENST00000591534 HTATSF1O43719 755 aaKnown RBP12.53□□□□□ -0.4
BRCA1-226ENST00000591534 C21orf2O43822 256 aa12.53□□□□□ -0.4
BRCA1-226ENST00000591534 A1BGP04217 495 aa12.53□□□□□ -0.4
BRCA1-226ENST00000591534 U2AF1L5P0DN76 240 aaPredicted RBP12.53□□□□□ -0.4
BRCA1-226ENST00000591534 U2AF1Q01081 240 aaKnown RBP eCLIP12.53□□□□□ -0.4
BRCA1-226ENST00000591534 TMC2Q8TDI7 906 aa12.53□□□□□ -0.4
BRCA1-226ENST00000591534 MASTLQ96GX5 879 aa12.53□□□□□ -0.4
BRCA1-226ENST00000591534 TAOK3Q9H2K8 898 aa12.53□□□□□ -0.4
BRCA1-226ENST00000591534 EMILIN3Q9NT22 766 aa12.53□□□□□ -0.4
BRCA1-226ENST00000591534 ARIH1Q9Y4X5 557 aaPredicted RBP12.53□□□□□ -0.4
BRCA1-226ENST00000591534 ADAMTS7Q9UKP4 1686 aa12.53□□□□□ -0.4
BRCA1-226ENST00000591534 NFKBIEO00221 500 aa12.52□□□□□ -0.41
BRCA1-226ENST00000591534 CAMTA2O94983 1202 aa12.52□□□□□ -0.41
BRCA1-226ENST00000591534 NBPF5PQ86XG9 351 aaPredicted RBP12.52□□□□□ -0.41
BRCA1-226ENST00000591534 TMEM121BQ9BXQ6 578 aaPredicted RBP12.52□□□□□ -0.41
BRCA1-226ENST00000591534 RSPH6AQ9H0K4 717 aa12.52□□□□□ -0.41
BRCA1-226ENST00000591534 COLQQ9Y215 455 aaPredicted RBP12.52□□□□□ -0.41
BRCA1-226ENST00000591534 LTBP3Q9NS15 1303 aa12.52□□□□□ -0.41
BRCA1-226ENST00000591534 TNRC6CQ9HCJ0 1690 aaKnown RBP12.51□□□□□ -0.41
BRCA1-226ENST00000591534 C2orf72A6NCS6 295 aa12.51□□□□□ -0.41
BRCA1-226ENST00000591534 TPTE2Q6XPS3 522 aa12.51□□□□□ -0.41
BRCA1-226ENST00000591534 PHACTR3Q96KR7 559 aa12.51□□□□□ -0.41
BRCA1-226ENST00000591534 COL3A1P02461 1466 aaPredicted RBP12.51□□□□□ -0.41
BRCA1-226ENST00000591534 NRXN2Q9P2S2 1712 aa12.51□□□□□ -0.41
BRCA1-226ENST00000591534 IQCA1LA6NCM1 817 aa12.5□□□□□ -0.41
BRCA1-226ENST00000591534 DPYSL4O14531 572 aa12.5□□□□□ -0.41
BRCA1-226ENST00000591534 SRGNP10124 158 aa12.5□□□□□ -0.41
BRCA1-226ENST00000591534 HTRA3P83110 453 aa12.5□□□□□ -0.41
BRCA1-226ENST00000591534 PRPF40BQ6NWY9 871 aaKnown RBP12.5□□□□□ -0.41
BRCA1-226ENST00000591534 USP16Q9Y5T5 823 aa12.5□□□□□ -0.41
BRCA1-226ENST00000591534 UBR2Q8IWV8 1755 aa12.49□□□□□ -0.41
BRCA1-226ENST00000591534 G3V3G9 751 aa12.49□□□□□ -0.41
BRCA1-226ENST00000591534 NPR1P16066 1061 aa12.49□□□□□ -0.41
BRCA1-226ENST00000591534 GTF2E1P29083 439 aaPredicted RBP12.49□□□□□ -0.41
BRCA1-226ENST00000591534 MLLT3P42568 568 aaPredicted RBP12.49□□□□□ -0.41
BRCA1-226ENST00000591534 TAF7Q15545 349 aaPredicted RBP12.49□□□□□ -0.41
BRCA1-226ENST00000591534 CCDC93Q567U6 631 aa12.49□□□□□ -0.41
BRCA1-226ENST00000591534 CCDC24Q8N4L8 307 aa12.49□□□□□ -0.41
BRCA1-226ENST00000591534 PNISRQ8TF01 805 aaKnown RBP12.49□□□□□ -0.41
BRCA1-226ENST00000591534 ZC3H15Q8WU90 426 aaKnown RBP12.49□□□□□ -0.41
BRCA1-226ENST00000591534 PNNQ9H307 717 aaKnown RBP12.49□□□□□ -0.41
BRCA1-226ENST00000591534 WDR90Q96KV7 1748 aa12.48□□□□□ -0.41
BRCA1-226ENST00000591534 SEC24BO95487 1268 aa12.48□□□□□ -0.41
BRCA1-226ENST00000591534 POTEJP0CG39 1038 aa12.48□□□□□ -0.41
BRCA1-226ENST00000591534 PPP2R1AP30153 589 aa12.48□□□□□ -0.41
BRCA1-226ENST00000591534 ALDH1B1P30837 517 aa12.48□□□□□ -0.41
BRCA1-226ENST00000591534 PRELPP51888 382 aa12.48□□□□□ -0.41
BRCA1-226ENST00000591534 FOXK1P85037 733 aa12.48□□□□□ -0.41
BRCA1-226ENST00000591534 MCM10Q7L590 875 aa12.48□□□□□ -0.41
BRCA1-226ENST00000591534 PLPP6Q8IY26 295 aa12.48□□□□□ -0.41
BRCA1-226ENST00000591534 RTKN2Q8IZC4 609 aa12.48□□□□□ -0.41
BRCA1-226ENST00000591534 NIP7Q9Y221 180 aaKnown RBP eCLIP12.48□□□□□ -0.41
BRCA1-226ENST00000591534 AFDNP55196 1824 aaKnown RBP12.47□□□□□ -0.41
BRCA1-226ENST00000591534 KCNQ3O43525 872 aa12.47□□□□□ -0.41
BRCA1-226ENST00000591534 NYXQ9GZU5 481 aa12.47□□□□□ -0.41
BRCA1-226ENST00000591534 VIRMAQ69YN4 1812 aaKnown RBP12.46□□□□□ -0.41
BRCA1-226ENST00000591534 POTEFA5A3E0 1075 aa12.46□□□□□ -0.41
BRCA1-226ENST00000591534 TMEM92Q6UXU6 159 aa12.46□□□□□ -0.41
BRCA1-226ENST00000591534 SLC39A7Q92504 469 aa12.46□□□□□ -0.41
BRCA1-226ENST00000591534 SBF1O95248 1867 aa12.46□□□□□ -0.42
BRCA1-226ENST00000591534 DLEC1Q9Y238 1755 aa12.46□□□□□ -0.42
BRCA1-226ENST00000591534 KLRG2A4D1S0 409 aaPredicted RBP12.45□□□□□ -0.42
BRCA1-226ENST00000591534 POTECB2RU33 542 aa12.45□□□□□ -0.42
BRCA1-226ENST00000591534 FKBP4Q02790 459 aaKnown RBP eCLIP12.45□□□□□ -0.42
BRCA1-226ENST00000591534 GRIPAP1Q4V328 841 aa12.45□□□□□ -0.42
BRCA1-226ENST00000591534 SCN7AQ01118 1682 aa12.45□□□□□ -0.42
BRCA1-226ENST00000591534 ERVV-1B6SEH8 477 aa12.44□□□□□ -0.42
BRCA1-226ENST00000591534 DDNO94850 711 aaPredicted RBP12.44□□□□□ -0.42
BRCA1-226ENST00000591534 C7P10643 843 aa12.44□□□□□ -0.42
BRCA1-226ENST00000591534 PIP4K2AP48426 406 aaPredicted RBP12.44□□□□□ -0.42
BRCA1-226ENST00000591534 CC2D2BQ6DHV5 1058 aa12.44□□□□□ -0.42
BRCA1-226ENST00000591534 SMYD5Q6GMV2 418 aa12.44□□□□□ -0.42
BRCA1-226ENST00000591534 KIF6Q6ZMV9 814 aa12.44□□□□□ -0.42
BRCA1-226ENST00000591534 LDHDQ86WU2 507 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 113.8 ms