RNA–Protein interactions for RNA: ENST00000591226.1

TPM4-213, Transcript of tropomyosin 4, human

Gene TPM4, Length 2,672 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM4-213	ENST00000591226	CHMP5	Q9NZZ3	219 aa		13.78	□□□□□ -0.2
TPM4-213	ENST00000591226	EXOC5	O00471	708 aa		13.78	□□□□□ -0.2
TPM4-213	ENST00000591226	RFX5	P48382	616 aa	Predicted RBP	13.78	□□□□□ -0.2
TPM4-213	ENST00000591226	CNTROB	Q8N137	903 aa		13.78	□□□□□ -0.2
TPM4-213	ENST00000591226	EAF2	Q96CJ1	260 aa	Predicted RBP	13.78	□□□□□ -0.2
TPM4-213	ENST00000591226	NRAP	Q86VF7	1730 aa		13.78	□□□□□ -0.2
TPM4-213	ENST00000591226	BCL9	O00512	1426 aa		13.77	□□□□□ -0.2
TPM4-213	ENST00000591226	DDIT3	P35638	169 aa		13.77	□□□□□ -0.2
TPM4-213	ENST00000591226	GPATCH3	Q96I76	525 aa		13.77	□□□□□ -0.2
TPM4-213	ENST00000591226	CWC25	Q9NXE8	425 aa	Predicted RBP	13.77	□□□□□ -0.2
TPM4-213	ENST00000591226	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.77	□□□□□ -0.2
TPM4-213	ENST00000591226	LRP6	O75581	1613 aa		13.77	□□□□□ -0.2
TPM4-213	ENST00000591226	COPRS	Q9NQ92	184 aa		13.77	□□□□□ -0.21
TPM4-213	ENST00000591226	TLR7	Q9NYK1	1049 aa	Known RBP	13.77	□□□□□ -0.21
TPM4-213	ENST00000591226		H7C1W4	665 aa		13.77	□□□□□ -0.21
TPM4-213	ENST00000591226	PTPN12	Q05209	780 aa	Known RBP	13.77	□□□□□ -0.21
TPM4-213	ENST00000591226	CCDC8	Q9H0W5	538 aa	Predicted RBP	13.77	□□□□□ -0.21
TPM4-213	ENST00000591226	PIP4K2B	P78356	416 aa		13.76	□□□□□ -0.21
TPM4-213	ENST00000591226	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.76	□□□□□ -0.21
TPM4-213	ENST00000591226	NUTM2E	B1AL46	878 aa	Predicted RBP	13.76	□□□□□ -0.21
TPM4-213	ENST00000591226	HSP90AA1	P07900	732 aa	Known RBP	13.76	□□□□□ -0.21
TPM4-213	ENST00000591226	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.76	□□□□□ -0.21
TPM4-213	ENST00000591226	SYTL4	Q96C24	671 aa	Predicted RBP	13.76	□□□□□ -0.21
TPM4-213	ENST00000591226	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.76	□□□□□ -0.21
TPM4-213	ENST00000591226	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.75	□□□□□ -0.21
TPM4-213	ENST00000591226	LMBR1L	Q6UX01	489 aa		13.75	□□□□□ -0.21
TPM4-213	ENST00000591226	PALD1	Q9ULE6	856 aa		13.75	□□□□□ -0.21
TPM4-213	ENST00000591226	SPATA31A1	Q5TZJ5	1347 aa		13.75	□□□□□ -0.21
TPM4-213	ENST00000591226	DOT1L	Q8TEK3	1739 aa		13.75	□□□□□ -0.21
TPM4-213	ENST00000591226	FOXO4	P98177	505 aa		13.75	□□□□□ -0.21
TPM4-213	ENST00000591226	CCDC191	Q8NCU4	936 aa		13.75	□□□□□ -0.21
TPM4-213	ENST00000591226	SLC4A9	Q96Q91	983 aa		13.75	□□□□□ -0.21
TPM4-213	ENST00000591226	SGSM2	O43147	1006 aa		13.74	□□□□□ -0.21
TPM4-213	ENST00000591226	STARD3NL	O95772	234 aa		13.74	□□□□□ -0.21
TPM4-213	ENST00000591226	MCC	P23508	829 aa		13.74	□□□□□ -0.21
TPM4-213	ENST00000591226	GLIPR1L2	Q4G1C9	344 aa		13.74	□□□□□ -0.21
TPM4-213	ENST00000591226	CHMP3	Q9Y3E7	222 aa		13.74	□□□□□ -0.21
TPM4-213	ENST00000591226	ST18	O60284	1047 aa		13.73	□□□□□ -0.21
TPM4-213	ENST00000591226	PRIM1	P49642	420 aa	Known RBP	13.73	□□□□□ -0.21
TPM4-213	ENST00000591226	TFCP2	Q12800	502 aa		13.73	□□□□□ -0.21
TPM4-213	ENST00000591226	VASP	P50552	380 aa	Predicted RBP	13.73	□□□□□ -0.21
TPM4-213	ENST00000591226	CWC27	Q6UX04	472 aa	Known RBP	13.73	□□□□□ -0.21
TPM4-213	ENST00000591226	ISCA1	Q9BUE6	129 aa		13.73	□□□□□ -0.21
TPM4-213	ENST00000591226	TCIRG1	Q13488	830 aa		13.72	□□□□□ -0.21
TPM4-213	ENST00000591226	KIF6	Q6ZMV9	814 aa		13.72	□□□□□ -0.21
TPM4-213	ENST00000591226	CDCA7	Q9BWT1	371 aa	Predicted RBP	13.72	□□□□□ -0.21
TPM4-213	ENST00000591226	DIAPH3	Q9NSV4	1193 aa		13.72	□□□□□ -0.21
TPM4-213	ENST00000591226	TOM1	O60784	492 aa		13.72	□□□□□ -0.21
TPM4-213	ENST00000591226	DDB1	Q16531	1140 aa		13.72	□□□□□ -0.21
TPM4-213	ENST00000591226	TNNI3K	Q59H18	835 aa		13.72	□□□□□ -0.21
TPM4-213	ENST00000591226	EVI5L	Q96CN4	794 aa		13.72	□□□□□ -0.21
TPM4-213	ENST00000591226	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.72	□□□□□ -0.21
TPM4-213	ENST00000591226	FPGT-TNNI3K	V9GXZ4	949 aa		13.72	□□□□□ -0.21
TPM4-213	ENST00000591226	RAD50	Q92878	1312 aa		13.71	□□□□□ -0.21
TPM4-213	ENST00000591226	CYP19A1	P11511	503 aa	Predicted RBP	13.71	□□□□□ -0.21
TPM4-213	ENST00000591226	ANAPC15	P60006	121 aa		13.71	□□□□□ -0.21
TPM4-213	ENST00000591226	THRAP3	Q9Y2W1	955 aa	Known RBP	13.71	□□□□□ -0.21
TPM4-213	ENST00000591226	NEK4	P51957	841 aa		13.71	□□□□□ -0.22
TPM4-213	ENST00000591226	LSG1	Q9H089	658 aa	Known RBP	13.71	□□□□□ -0.22
TPM4-213	ENST00000591226	BOLA2	Q9H3K6	86 aa		13.71	□□□□□ -0.22
TPM4-213	ENST00000591226	DBNL	Q9UJU6	430 aa	Known RBP	13.71	□□□□□ -0.22
TPM4-213	ENST00000591226	SPATA31A5	Q5VU36	1347 aa		13.7	□□□□□ -0.22
TPM4-213	ENST00000591226	SPATA31A7	Q8IWB4	1347 aa		13.7	□□□□□ -0.22
TPM4-213	ENST00000591226	EPB41L2	O43491	1005 aa	Known RBP	13.7	□□□□□ -0.22
TPM4-213	ENST00000591226	PIAS4	Q8N2W9	510 aa	Predicted RBP	13.7	□□□□□ -0.22
TPM4-213	ENST00000591226	MAP3K15	Q6ZN16	1313 aa		13.7	□□□□□ -0.22
TPM4-213	ENST00000591226		A0A0G2JS52	829 aa		13.7	□□□□□ -0.22
TPM4-213	ENST00000591226	HSPA4	P34932	840 aa		13.7	□□□□□ -0.22
TPM4-213	ENST00000591226	ARID3A	Q99856	593 aa		13.7	□□□□□ -0.22
TPM4-213	ENST00000591226	ZBTB1	Q9Y2K1	713 aa		13.7	□□□□□ -0.22
TPM4-213	ENST00000591226	CCDC9	Q9Y3X0	531 aa	Known RBP	13.7	□□□□□ -0.22
TPM4-213	ENST00000591226	NWD2	Q9ULI1	1742 aa		13.7	□□□□□ -0.22
TPM4-213	ENST00000591226	ATXN8OS	P0DMR3	200 aa		13.69	□□□□□ -0.22
TPM4-213	ENST00000591226	MCM4	P33991	863 aa		13.69	□□□□□ -0.22
TPM4-213	ENST00000591226	SLIT2	O94813	1529 aa		13.69	□□□□□ -0.22
TPM4-213	ENST00000591226	TRIM28	Q13263	835 aa	Known RBP	13.69	□□□□□ -0.22
TPM4-213	ENST00000591226	MARCH10	Q8NA82	808 aa	Predicted RBP	13.69	□□□□□ -0.22
TPM4-213	ENST00000591226	RUFY2	Q8WXA3	655 aa		13.69	□□□□□ -0.22
TPM4-213	ENST00000591226	IL17RA	Q96F46	866 aa		13.69	□□□□□ -0.22
TPM4-213	ENST00000591226	HLF	Q16534	295 aa		13.68	□□□□□ -0.22
TPM4-213	ENST00000591226	KIAA1211	Q6ZU35	1233 aa		13.68	□□□□□ -0.22
TPM4-213	ENST00000591226	ATG9A	Q7Z3C6	839 aa		13.68	□□□□□ -0.22
TPM4-213	ENST00000591226	ACSBG1	Q96GR2	724 aa		13.68	□□□□□ -0.22
TPM4-213	ENST00000591226	RAB3GAP1	Q15042	981 aa		13.68	□□□□□ -0.22
TPM4-213	ENST00000591226	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.68	□□□□□ -0.22
TPM4-213	ENST00000591226	TNPO1	Q92973	898 aa	Known RBP	13.68	□□□□□ -0.22
TPM4-213	ENST00000591226	ZNF594	Q96JF6	807 aa	Predicted RBP	13.68	□□□□□ -0.22
TPM4-213	ENST00000591226	DBNDD2	Q9BQY9	259 aa		13.68	□□□□□ -0.22
TPM4-213	ENST00000591226	GPT	P24298	496 aa		13.67	□□□□□ -0.22
TPM4-213	ENST00000591226	FAM89A	Q96GI7	184 aa		13.67	□□□□□ -0.22
TPM4-213	ENST00000591226	UPF3B	Q9BZI7	483 aa	Known RBP	13.67	□□□□□ -0.22
TPM4-213	ENST00000591226	ATP5J	P18859	108 aa		13.67	□□□□□ -0.22
TPM4-213	ENST00000591226	GSE1	Q14687	1217 aa		13.67	□□□□□ -0.22
TPM4-213	ENST00000591226	EDC3	Q96F86	508 aa	Known RBP	13.67	□□□□□ -0.22
TPM4-213	ENST00000591226	FAM227B	Q96M60	508 aa		13.67	□□□□□ -0.22
TPM4-213	ENST00000591226	FSD1	Q9BTV5	496 aa		13.67	□□□□□ -0.22
TPM4-213	ENST00000591226		A0A0U1RQG5	324 aa	Predicted RBP	13.67	□□□□□ -0.22
TPM4-213	ENST00000591226	UBAP1L	F5GYI3	381 aa		13.67	□□□□□ -0.22
TPM4-213	ENST00000591226	PCCA	P05165	728 aa	Predicted RBP	13.67	□□□□□ -0.22
TPM4-213	ENST00000591226	PTH1R	Q03431	593 aa		13.67	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms