RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 NBPF5PQ86XG9 351 aaPredicted RBP17.23■□□□□ 0.35
VMP1-210ENST00000589823 SUPT16HQ9Y5B9 1047 aaKnown RBP17.23■□□□□ 0.35
VMP1-210ENST00000589823 SERPINB2P05120 415 aa17.22■□□□□ 0.35
VMP1-210ENST00000589823 GTF2E1P29083 439 aaPredicted RBP17.22■□□□□ 0.35
VMP1-210ENST00000589823 DDR1Q08345 913 aa17.22■□□□□ 0.35
VMP1-210ENST00000589823 SUSD4Q5VX71 490 aa17.22■□□□□ 0.35
VMP1-210ENST00000589823 TPTE2Q6XPS3 522 aa17.22■□□□□ 0.35
VMP1-210ENST00000589823 UTP14AQ9BVJ6 771 aaKnown RBP17.22■□□□□ 0.35
VMP1-210ENST00000589823 INTS3Q68E01 1043 aaKnown RBP17.21■□□□□ 0.35
VMP1-210ENST00000589823 TRMT112Q9UI30 125 aaKnown RBP17.21■□□□□ 0.35
VMP1-210ENST00000589823 IBTKQ9P2D0 1353 aaPredicted RBP17.2■□□□□ 0.34
VMP1-210ENST00000589823 GCKRQ14397 625 aa17.2■□□□□ 0.34
VMP1-210ENST00000589823 PDE3AQ14432 1141 aa17.2■□□□□ 0.34
VMP1-210ENST00000589823 TMEM57Q8N5G2 664 aa17.2■□□□□ 0.34
VMP1-210ENST00000589823 CNBD1Q8NA66 436 aa17.2■□□□□ 0.34
VMP1-210ENST00000589823 RNF123Q5XPI4 1314 aa17.2■□□□□ 0.34
VMP1-210ENST00000589823 NTSR2O95665 410 aa17.19■□□□□ 0.34
VMP1-210ENST00000589823 ST5P78524 1137 aa17.19■□□□□ 0.34
VMP1-210ENST00000589823 ITPRIPQ8IWB1 547 aa17.19■□□□□ 0.34
VMP1-210ENST00000589823 ZBTB38Q8NAP3 1195 aaPredicted RBP17.19■□□□□ 0.34
VMP1-210ENST00000589823 PANK1Q8TE04 598 aa17.19■□□□□ 0.34
VMP1-210ENST00000589823 C9orf78Q9NZ63 289 aaPredicted RBP17.19■□□□□ 0.34
VMP1-210ENST00000589823 AFDNP55196 1824 aaKnown RBP17.19■□□□□ 0.34
VMP1-210ENST00000589823 COL24A1Q17RW2 1714 aa17.18■□□□□ 0.34
VMP1-210ENST00000589823 PCCAP05165 728 aaPredicted RBP17.18■□□□□ 0.34
VMP1-210ENST00000589823 RLBP1P12271 317 aa17.18■□□□□ 0.34
VMP1-210ENST00000589823 SH3TC1Q8TE82 1336 aa17.18■□□□□ 0.34
VMP1-210ENST00000589823 GRM8O00222 908 aa17.17■□□□□ 0.34
VMP1-210ENST00000589823 PTGER2P43116 358 aa17.17■□□□□ 0.34
VMP1-210ENST00000589823 RTL5Q5HYW3 569 aaPredicted RBP17.17■□□□□ 0.34
VMP1-210ENST00000589823 PRR5LQ6MZQ0 368 aa17.17■□□□□ 0.34
VMP1-210ENST00000589823 NUTM1Q86Y26 1132 aa17.17■□□□□ 0.34
VMP1-210ENST00000589823 FAM89AQ96GI7 184 aa17.17■□□□□ 0.34
VMP1-210ENST00000589823 SGIP1Q9BQI5 828 aa17.17■□□□□ 0.34
VMP1-210ENST00000589823 N4BP2Q86UW6 1770 aaPredicted RBP17.16■□□□□ 0.34
VMP1-210ENST00000589823 HSP90B1P14625 803 aaKnown RBP17.16■□□□□ 0.34
VMP1-210ENST00000589823 ERFEQ4G0M1 354 aa17.16■□□□□ 0.34
VMP1-210ENST00000589823 C20orf194Q5TEA3 1177 aa17.16■□□□□ 0.34
VMP1-210ENST00000589823 COG6Q9Y2V7 657 aa17.16■□□□□ 0.34
VMP1-210ENST00000589823 H7C1W4 665 aa17.15■□□□□ 0.34
VMP1-210ENST00000589823 MVPQ14764 893 aaKnown RBP17.15■□□□□ 0.34
VMP1-210ENST00000589823 UBE3BQ7Z3V4 1068 aa17.15■□□□□ 0.34
VMP1-210ENST00000589823 CCDC24Q8N4L8 307 aa17.15■□□□□ 0.34
VMP1-210ENST00000589823 JARID2Q92833 1246 aaPredicted RBP17.15■□□□□ 0.34
VMP1-210ENST00000589823 NRXN2Q9P2S2 1712 aa17.14■□□□□ 0.33
VMP1-210ENST00000589823 IRS4O14654 1257 aaPredicted RBP17.14■□□□□ 0.33
VMP1-210ENST00000589823 GNAI3P08754 354 aa17.14■□□□□ 0.33
VMP1-210ENST00000589823 USP44Q9H0E7 712 aa17.14■□□□□ 0.33
VMP1-210ENST00000589823 CHMP4BQ9H444 224 aaKnown RBP17.14■□□□□ 0.33
VMP1-210ENST00000589823 PPP1R1BQ9UD71 204 aaPredicted RBP17.14■□□□□ 0.33
VMP1-210ENST00000589823 DDX19BQ9UMR2 479 aa17.14■□□□□ 0.33
VMP1-210ENST00000589823 HDAC5Q9UQL6 1122 aa17.14■□□□□ 0.33
VMP1-210ENST00000589823 CDHR2Q9BYE9 1310 aa17.14■□□□□ 0.33
VMP1-210ENST00000589823 UBTFL1P0CB47 393 aaPredicted RBP17.13■□□□□ 0.33
VMP1-210ENST00000589823 SYNE4Q8N205 404 aa17.13■□□□□ 0.33
VMP1-210ENST00000589823 BRIP1Q9BX63 1249 aa17.13■□□□□ 0.33
VMP1-210ENST00000589823 UTYO14607 1347 aa17.13■□□□□ 0.33
VMP1-210ENST00000589823 ABCC12Q96J65 1359 aa17.13■□□□□ 0.33
VMP1-210ENST00000589823 NBPF7P0C2Y1 421 aaPredicted RBP17.12■□□□□ 0.33
VMP1-210ENST00000589823 HCLS1P14317 486 aaPredicted RBP17.12■□□□□ 0.33
VMP1-210ENST00000589823 PDE6BP35913 854 aa17.12■□□□□ 0.33
VMP1-210ENST00000589823 SLC10A5Q5PT55 438 aa17.12■□□□□ 0.33
VMP1-210ENST00000589823 NLRP3Q96P20 1036 aa17.12■□□□□ 0.33
VMP1-210ENST00000589823 MEIS3Q99687 375 aa17.12■□□□□ 0.33
VMP1-210ENST00000589823 RIC1Q4ADV7 1423 aa17.12■□□□□ 0.33
VMP1-210ENST00000589823 C10orf71Q711Q0 1435 aa17.12■□□□□ 0.33
VMP1-210ENST00000589823 PDE8AO60658 829 aa17.11■□□□□ 0.33
VMP1-210ENST00000589823 CASP7P55210 303 aa17.11■□□□□ 0.33
VMP1-210ENST00000589823 KLHL34Q8N239 644 aa17.11■□□□□ 0.33
VMP1-210ENST00000589823 ZBTB7BO15156 539 aaPredicted RBP17.1■□□□□ 0.33
VMP1-210ENST00000589823 GNAI2P04899 355 aa17.09■□□□□ 0.33
VMP1-210ENST00000589823 SUCLG2Q96I99 432 aa17.09■□□□□ 0.33
VMP1-210ENST00000589823 CRBNQ96SW2 442 aa17.09■□□□□ 0.33
VMP1-210ENST00000589823 PLA2G12BQ9BX93 195 aa17.09■□□□□ 0.33
VMP1-210ENST00000589823 PDZRN3Q9UPQ7 1066 aa17.09■□□□□ 0.33
VMP1-210ENST00000589823 CD2APQ9Y5K6 639 aa17.09■□□□□ 0.33
VMP1-210ENST00000589823 CTSWP56202 376 aa17.08■□□□□ 0.32
VMP1-210ENST00000589823 H0YIN7 160 aa17.07■□□□□ 0.32
VMP1-210ENST00000589823 TGFB2P61812 414 aa17.07■□□□□ 0.32
VMP1-210ENST00000589823 CCDC152Q4G0S7 254 aa17.07■□□□□ 0.32
VMP1-210ENST00000589823 C2CD5Q86YS7 1000 aa17.07■□□□□ 0.32
VMP1-210ENST00000589823 LRRFIP2Q9Y608 721 aaKnown RBP17.07■□□□□ 0.32
VMP1-210ENST00000589823 LAMB2P55268 1798 aa17.07■□□□□ 0.32
VMP1-210ENST00000589823 KLRG2A4D1S0 409 aaPredicted RBP17.06■□□□□ 0.32
VMP1-210ENST00000589823 IRX6P78412 446 aaPredicted RBP17.06■□□□□ 0.32
VMP1-210ENST00000589823 FOXO4P98177 505 aa17.06■□□□□ 0.32
VMP1-210ENST00000589823 SF3B3Q15393 1217 aaKnown RBP17.06■□□□□ 0.32
VMP1-210ENST00000589823 RPGRQ92834 1020 aaKnown RBP17.06■□□□□ 0.32
VMP1-210ENST00000589823 BICC1Q9H694 974 aaKnown RBP17.06■□□□□ 0.32
VMP1-210ENST00000589823 DDX60Q8IY21 1712 aaKnown RBP17.06■□□□□ 0.32
VMP1-210ENST00000589823 LRP5O75197 1615 aa17.06■□□□□ 0.32
VMP1-210ENST00000589823 TNRC6CQ9HCJ0 1690 aaKnown RBP17.05■□□□□ 0.32
VMP1-210ENST00000589823 NEFLP07196 543 aa17.05■□□□□ 0.32
VMP1-210ENST00000589823 CRY2Q49AN0 593 aa17.05■□□□□ 0.32
VMP1-210ENST00000589823 LMBR1LQ6UX01 489 aa17.05■□□□□ 0.32
VMP1-210ENST00000589823 C3orf67Q6ZVT6 689 aa17.05■□□□□ 0.32
VMP1-210ENST00000589823 TTLL11Q8NHH1 800 aa17.05■□□□□ 0.32
VMP1-210ENST00000589823 KAZALD1Q96I82 304 aa17.05■□□□□ 0.32
VMP1-210ENST00000589823 CHMP3Q9Y3E7 222 aa17.05■□□□□ 0.32
VMP1-210ENST00000589823 ANKRD31Q8N7Z5 1873 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms