RNA–Protein interactions for RNA: ENST00000588555.1

SCAMP4-210, Transcript of secretory carrier membrane protein 4, human

Gene SCAMP4, Length 1,785 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCAMP4-210	ENST00000588555	UBN2	Q6ZU65	1347 aa		32.35	■■■□□ 2.77
SCAMP4-210	ENST00000588555	PCCA	P05165	728 aa	Predicted RBP	32.35	■■■□□ 2.77
SCAMP4-210	ENST00000588555	AMIGO3	Q86WK7	504 aa		32.34	■■■□□ 2.77
SCAMP4-210	ENST00000588555	PLSCR1	O15162	318 aa		32.33	■■■□□ 2.77
SCAMP4-210	ENST00000588555	SMIM5	Q71RC9	77 aa		32.33	■■■□□ 2.77
SCAMP4-210	ENST00000588555	PROM2	Q8N271	834 aa		32.33	■■■□□ 2.77
SCAMP4-210	ENST00000588555	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	32.33	■■■□□ 2.77
SCAMP4-210	ENST00000588555	FOXO4	P98177	505 aa		32.32	■■■□□ 2.77
SCAMP4-210	ENST00000588555	RTL5	Q5HYW3	569 aa	Predicted RBP	32.32	■■■□□ 2.77
SCAMP4-210	ENST00000588555	RTCB	Q9Y3I0	505 aa	Known RBP	32.32	■■■□□ 2.77
SCAMP4-210	ENST00000588555	RGL2	O15211	777 aa		32.32	■■■□□ 2.76
SCAMP4-210	ENST00000588555	TXNRD1	Q16881	649 aa		32.31	■■■□□ 2.76
SCAMP4-210	ENST00000588555	NOP58	Q9Y2X3	529 aa	Known RBP	32.31	■■■□□ 2.76
SCAMP4-210	ENST00000588555	CLEC4G	Q6UXB4	293 aa		32.3	■■■□□ 2.76
SCAMP4-210	ENST00000588555	C4A	P0C0L4	1744 aa		32.3	■■■□□ 2.76
SCAMP4-210	ENST00000588555	UBR3	Q6ZT12	1888 aa		32.3	■■■□□ 2.76
SCAMP4-210	ENST00000588555	APBB1	O00213	710 aa		32.3	■■■□□ 2.76
SCAMP4-210	ENST00000588555	SURF6	O75683	361 aa	Known RBP	32.3	■■■□□ 2.76
SCAMP4-210	ENST00000588555	FAM89A	Q96GI7	184 aa		32.3	■■■□□ 2.76
SCAMP4-210	ENST00000588555	AK7	Q96M32	723 aa		32.29	■■■□□ 2.76
SCAMP4-210	ENST00000588555	NARF	Q9UHQ1	456 aa		32.29	■■■□□ 2.76
SCAMP4-210	ENST00000588555	ZNF652	Q9Y2D9	606 aa		32.29	■■■□□ 2.76
SCAMP4-210	ENST00000588555	CDHR2	Q9BYE9	1310 aa		32.29	■■■□□ 2.76
SCAMP4-210	ENST00000588555	SMARCA5	O60264	1052 aa	Predicted RBP	32.28	■■■□□ 2.76
SCAMP4-210	ENST00000588555	APBA3	O96018	575 aa		32.28	■■■□□ 2.76
SCAMP4-210	ENST00000588555	PLA2G12B	Q9BX93	195 aa		32.27	■■■□□ 2.76
SCAMP4-210	ENST00000588555	LRRCC1	Q9C099	1032 aa		32.27	■■■□□ 2.76
SCAMP4-210	ENST00000588555	BCL2L12	Q9HB09	334 aa		32.27	■■■□□ 2.76
SCAMP4-210	ENST00000588555	TSHZ2	Q9NRE2	1034 aa		32.27	■■■□□ 2.76
SCAMP4-210	ENST00000588555	RGPD3	A6NKT7	1758 aa	Predicted RBP	32.26	■■■□□ 2.76
SCAMP4-210	ENST00000588555	RGPD4	Q7Z3J3	1758 aa		32.26	■■■□□ 2.76
SCAMP4-210	ENST00000588555	RAB11FIP3	O75154	756 aa		32.26	■■■□□ 2.75
SCAMP4-210	ENST00000588555	LMBR1L	Q6UX01	489 aa		32.26	■■■□□ 2.75
SCAMP4-210	ENST00000588555	ARHGEF1	Q92888	912 aa	Known RBP	32.26	■■■□□ 2.75
SCAMP4-210	ENST00000588555	PA2G4	Q9UQ80	394 aa	Known RBP	32.26	■■■□□ 2.75
SCAMP4-210	ENST00000588555	RFX5	P48382	616 aa	Predicted RBP	32.25	■■■□□ 2.75
SCAMP4-210	ENST00000588555	PARP10	Q53GL7	1025 aa		32.25	■■■□□ 2.75
SCAMP4-210	ENST00000588555	TRMT112	Q9UI30	125 aa	Known RBP	32.25	■■■□□ 2.75
SCAMP4-210	ENST00000588555	SYNE4	Q8N205	404 aa		32.24	■■■□□ 2.75
SCAMP4-210	ENST00000588555	ZBTB47	Q9UFB7	747 aa	Predicted RBP	32.24	■■■□□ 2.75
SCAMP4-210	ENST00000588555	HSP90AB4P	Q58FF6	505 aa		32.24	■■■□□ 2.75
SCAMP4-210	ENST00000588555	SUSD4	Q5VX71	490 aa		32.24	■■■□□ 2.75
SCAMP4-210	ENST00000588555	SRP68	Q9UHB9	627 aa	Known RBP	32.24	■■■□□ 2.75
SCAMP4-210	ENST00000588555	NIP7	Q9Y221	180 aa	Known RBP eCLIP	32.24	■■■□□ 2.75
SCAMP4-210	ENST00000588555	USPL1	Q5W0Q7	1092 aa		32.23	■■■□□ 2.75
SCAMP4-210	ENST00000588555	C16orf71	Q8IYS4	520 aa	Predicted RBP	32.23	■■■□□ 2.75
SCAMP4-210	ENST00000588555	ADRA2B	P18089	450 aa		32.22	■■■□□ 2.75
SCAMP4-210	ENST00000588555	TRAPPC3L	Q5T215	181 aa		32.22	■■■□□ 2.75
SCAMP4-210	ENST00000588555	COPRS	Q9NQ92	184 aa		32.22	■■■□□ 2.75
SCAMP4-210	ENST00000588555	HMGB2	P26583	209 aa	Known RBP	32.21	■■■□□ 2.75
SCAMP4-210	ENST00000588555	RHPN1	Q8TCX5	695 aa		32.21	■■■□□ 2.75
SCAMP4-210	ENST00000588555	USP42	Q9H9J4	1324 aa	Known RBP	32.2	■■■□□ 2.75
SCAMP4-210	ENST00000588555	PTPN12	Q05209	780 aa	Known RBP	32.2	■■■□□ 2.75
SCAMP4-210	ENST00000588555	PLEKHM2	Q8IWE5	1019 aa		32.2	■■■□□ 2.75
SCAMP4-210	ENST00000588555	OTUD7A	Q8TE49	926 aa	Predicted RBP	32.2	■■■□□ 2.75
SCAMP4-210	ENST00000588555	KIF1BP	Q96EK5	621 aa		32.2	■■■□□ 2.75
SCAMP4-210	ENST00000588555	MYH3	P11055	1940 aa		32.19	■■■□□ 2.74
SCAMP4-210	ENST00000588555	ZPR1	O75312	459 aa		32.19	■■■□□ 2.74
SCAMP4-210	ENST00000588555	PHF14	O94880	888 aa		32.19	■■■□□ 2.74
SCAMP4-210	ENST00000588555	NTSR2	O95665	410 aa		32.19	■■■□□ 2.74
SCAMP4-210	ENST00000588555	KLHDC4	Q8TBB5	520 aa		32.19	■■■□□ 2.74
SCAMP4-210	ENST00000588555	UTP14A	Q9BVJ6	771 aa	Known RBP	32.19	■■■□□ 2.74
SCAMP4-210	ENST00000588555	IRS4	O14654	1257 aa	Predicted RBP	32.19	■■■□□ 2.74
SCAMP4-210	ENST00000588555	CSF1R	P07333	972 aa		32.19	■■■□□ 2.74
SCAMP4-210	ENST00000588555	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	32.18	■■■□□ 2.74
SCAMP4-210	ENST00000588555	COL24A1	Q17RW2	1714 aa		32.18	■■■□□ 2.74
SCAMP4-210	ENST00000588555	SH3TC1	Q8TE82	1336 aa		32.18	■■■□□ 2.74
SCAMP4-210	ENST00000588555	SALL3	Q9BXA9	1300 aa		32.18	■■■□□ 2.74
SCAMP4-210	ENST00000588555	TBC1D9B	Q66K14	1250 aa		32.17	■■■□□ 2.74
SCAMP4-210	ENST00000588555	SSFA2	P28290	1259 aa		32.17	■■■□□ 2.74
SCAMP4-210	ENST00000588555	RFC4	P35249	363 aa		32.17	■■■□□ 2.74
SCAMP4-210	ENST00000588555	LAMB2	P55268	1798 aa		32.17	■■■□□ 2.74
SCAMP4-210	ENST00000588555	ERC1	Q8IUD2	1116 aa		32.16	■■■□□ 2.74
SCAMP4-210	ENST00000588555	IL1RAPL2	Q9NP60	686 aa		32.16	■■■□□ 2.74
SCAMP4-210	ENST00000588555	CHMP3	Q9Y3E7	222 aa		32.16	■■■□□ 2.74
SCAMP4-210	ENST00000588555	DDX60	Q8IY21	1712 aa	Known RBP	32.16	■■■□□ 2.74
SCAMP4-210	ENST00000588555	OS9	Q13438	667 aa	Predicted RBP	32.15	■■■□□ 2.74
SCAMP4-210	ENST00000588555	C8orf34	Q49A92	452 aa		32.15	■■■□□ 2.74
SCAMP4-210	ENST00000588555	BACH2	Q9BYV9	841 aa		32.15	■■■□□ 2.74
SCAMP4-210	ENST00000588555	FAM161A	Q3B820	660 aa		32.14	■■■□□ 2.74
SCAMP4-210	ENST00000588555	BCL11A	Q9H165	835 aa		32.14	■■■□□ 2.74
SCAMP4-210	ENST00000588555	SIL1	Q9H173	461 aa		32.14	■■■□□ 2.74
SCAMP4-210	ENST00000588555	FAM177B	A6PVY3	158 aa		32.14	■■■□□ 2.74
SCAMP4-210	ENST00000588555	PDE8A	O60658	829 aa		32.14	■■■□□ 2.74
SCAMP4-210	ENST00000588555	SASH1	O94885	1247 aa		32.14	■■■□□ 2.74
SCAMP4-210	ENST00000588555	CTSW	P56202	376 aa		32.14	■■■□□ 2.74
SCAMP4-210	ENST00000588555	G3BP1	Q13283	466 aa	Known RBP eCLIP	32.14	■■■□□ 2.74
SCAMP4-210	ENST00000588555	ILDR1	Q86SU0	546 aa	Predicted RBP	32.14	■■■□□ 2.74
SCAMP4-210	ENST00000588555	TTLL11	Q8NHH1	800 aa		32.13	■■■□□ 2.73
SCAMP4-210	ENST00000588555	AKT1S1	Q96B36	256 aa		32.13	■■■□□ 2.73
SCAMP4-210	ENST00000588555	ZNF827	Q17R98	1081 aa		32.12	■■■□□ 2.73
SCAMP4-210	ENST00000588555	OSBPL3	Q9H4L5	887 aa		32.11	■■■□□ 2.73
SCAMP4-210	ENST00000588555	BMP2KL	Q5H9B9	411 aa		32.1	■■■□□ 2.73
SCAMP4-210	ENST00000588555	BICDL1	Q6ZP65	573 aa		32.1	■■■□□ 2.73
SCAMP4-210	ENST00000588555	TUBGCP6	Q96RT7	1819 aa		32.1	■■■□□ 2.73
SCAMP4-210	ENST00000588555	HCLS1	P14317	486 aa	Predicted RBP	32.09	■■■□□ 2.73
SCAMP4-210	ENST00000588555	NUTM1	Q86Y26	1132 aa		32.09	■■■□□ 2.73
SCAMP4-210	ENST00000588555	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	32.09	■■■□□ 2.73
SCAMP4-210	ENST00000588555	PDE1A	P54750	535 aa		32.09	■■■□□ 2.73
SCAMP4-210	ENST00000588555	SETDB2	Q96T68	719 aa		32.09	■■■□□ 2.73

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