RNA–Protein interactions for RNA: ENST00000580670.6

CDK5RAP3-219, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 5

Gene CDK5RAP3, Length 1,768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-219ENST00000580670 RFC4P35249 363 aa17.28■□□□□ 0.36
CDK5RAP3-219ENST00000580670 CASP7P55210 303 aa17.28■□□□□ 0.36
CDK5RAP3-219ENST00000580670 RTL5Q5HYW3 569 aaPredicted RBP17.28■□□□□ 0.36
CDK5RAP3-219ENST00000580670 CLEC4GQ6UXB4 293 aa17.28■□□□□ 0.36
CDK5RAP3-219ENST00000580670 SRP68Q9UHB9 627 aaKnown RBP17.28■□□□□ 0.36
CDK5RAP3-219ENST00000580670 SCN7AQ01118 1682 aa17.27■□□□□ 0.36
CDK5RAP3-219ENST00000580670 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.27■□□□□ 0.35
CDK5RAP3-219ENST00000580670 RGL2O15211 777 aa17.27■□□□□ 0.35
CDK5RAP3-219ENST00000580670 EN1Q05925 392 aaPredicted RBP17.27■□□□□ 0.35
CDK5RAP3-219ENST00000580670 USPL1Q5W0Q7 1092 aa17.27■□□□□ 0.35
CDK5RAP3-219ENST00000580670 KAZALD1Q96I82 304 aa17.27■□□□□ 0.35
CDK5RAP3-219ENST00000580670 CAMKK2Q96RR4 588 aa17.27■□□□□ 0.35
CDK5RAP3-219ENST00000580670 UBN2Q6ZU65 1347 aa17.27■□□□□ 0.35
CDK5RAP3-219ENST00000580670 PNMA6EA0A0J9YXQ4 647 aa17.26■□□□□ 0.35
CDK5RAP3-219ENST00000580670 EZH2Q15910 746 aaKnown RBP17.26■□□□□ 0.35
CDK5RAP3-219ENST00000580670 PPP1R42Q7Z4L9 355 aa17.26■□□□□ 0.35
CDK5RAP3-219ENST00000580670 BICC1Q9H694 974 aaKnown RBP17.26■□□□□ 0.35
CDK5RAP3-219ENST00000580670 NIP7Q9Y221 180 aaKnown RBP eCLIP17.26■□□□□ 0.35
CDK5RAP3-219ENST00000580670 C4AP0C0L4 1744 aa17.26■□□□□ 0.35
CDK5RAP3-219ENST00000580670 PCCAP05165 728 aaPredicted RBP17.25■□□□□ 0.35
CDK5RAP3-219ENST00000580670 SSFA2P28290 1259 aa17.25■□□□□ 0.35
CDK5RAP3-219ENST00000580670 BAG6P46379 1132 aa17.25■□□□□ 0.35
CDK5RAP3-219ENST00000580670 SMC5Q8IY18 1101 aa17.25■□□□□ 0.35
CDK5RAP3-219ENST00000580670 ZBTB38Q8NAP3 1195 aaPredicted RBP17.25■□□□□ 0.35
CDK5RAP3-219ENST00000580670 BCL2L12Q9HB09 334 aa17.25■□□□□ 0.35
CDK5RAP3-219ENST00000580670 SRGAP3O43295 1099 aa17.25■□□□□ 0.35
CDK5RAP3-219ENST00000580670 ZNF827Q17R98 1081 aa17.25■□□□□ 0.35
CDK5RAP3-219ENST00000580670 PARP10Q53GL7 1025 aa17.25■□□□□ 0.35
CDK5RAP3-219ENST00000580670 EPHA10Q5JZY3 1008 aa17.25■□□□□ 0.35
CDK5RAP3-219ENST00000580670 AKT1S1Q96B36 256 aa17.25■□□□□ 0.35
CDK5RAP3-219ENST00000580670 GCC1Q96CN9 775 aa17.25■□□□□ 0.35
CDK5RAP3-219ENST00000580670 TFCP2L1Q9NZI6 479 aa17.25■□□□□ 0.35
CDK5RAP3-219ENST00000580670 TRMT112Q9UI30 125 aaKnown RBP17.25■□□□□ 0.35
CDK5RAP3-219ENST00000580670 USP42Q9H9J4 1324 aaKnown RBP17.25■□□□□ 0.35
CDK5RAP3-219ENST00000580670 MTX1Q13505 466 aa17.24■□□□□ 0.35
CDK5RAP3-219ENST00000580670 FAM89AQ96GI7 184 aa17.24■□□□□ 0.35
CDK5RAP3-219ENST00000580670 POLA2Q14181 598 aa17.23■□□□□ 0.35
CDK5RAP3-219ENST00000580670 SUSD4Q5VX71 490 aa17.23■□□□□ 0.35
CDK5RAP3-219ENST00000580670 SSH3Q8TE77 659 aa17.23■□□□□ 0.35
CDK5RAP3-219ENST00000580670 DCTPP1Q9H773 170 aa17.23■□□□□ 0.35
CDK5RAP3-219ENST00000580670 TBC1D9BQ66K14 1250 aa17.23■□□□□ 0.35
CDK5RAP3-219ENST00000580670 UTP14AQ9BVJ6 771 aaKnown RBP17.23■□□□□ 0.35
CDK5RAP3-219ENST00000580670 PDZRN3Q9UPQ7 1066 aa17.23■□□□□ 0.35
CDK5RAP3-219ENST00000580670 FAM177BA6PVY3 158 aa17.22■□□□□ 0.35
CDK5RAP3-219ENST00000580670 BICDL1Q6ZP65 573 aa17.22■□□□□ 0.35
CDK5RAP3-219ENST00000580670 DEFB132Q7Z7B7 95 aa17.22■□□□□ 0.35
CDK5RAP3-219ENST00000580670 CDHR2Q9BYE9 1310 aa17.22■□□□□ 0.35
CDK5RAP3-219ENST00000580670 FOXO4P98177 505 aa17.21■□□□□ 0.35
CDK5RAP3-219ENST00000580670 RABL6Q3YEC7 729 aaPredicted RBP17.21■□□□□ 0.35
CDK5RAP3-219ENST00000580670 SKAP1Q86WV1 359 aa17.21■□□□□ 0.35
CDK5RAP3-219ENST00000580670 SYNE4Q8N205 404 aa17.21■□□□□ 0.35
CDK5RAP3-219ENST00000580670 CCDC125Q86Z20 511 aa17.2■□□□□ 0.34
CDK5RAP3-219ENST00000580670 SH3TC1Q8TE82 1336 aa17.2■□□□□ 0.34
CDK5RAP3-219ENST00000580670 IRS4O14654 1257 aaPredicted RBP17.2■□□□□ 0.34
CDK5RAP3-219ENST00000580670 NUCB1Q02818 461 aa17.2■□□□□ 0.34
CDK5RAP3-219ENST00000580670 ANKRD45Q5TZF3 282 aa17.2■□□□□ 0.34
CDK5RAP3-219ENST00000580670 LMBR1LQ6UX01 489 aa17.2■□□□□ 0.34
CDK5RAP3-219ENST00000580670 SETDB2Q96T68 719 aa17.2■□□□□ 0.34
CDK5RAP3-219ENST00000580670 PLA2G12BQ9BX93 195 aa17.2■□□□□ 0.34
CDK5RAP3-219ENST00000580670 NTSR2O95665 410 aa17.19■□□□□ 0.34
CDK5RAP3-219ENST00000580670 EXOC6BQ9Y2D4 811 aa17.19■□□□□ 0.34
CDK5RAP3-219ENST00000580670 CHMP3Q9Y3E7 222 aa17.19■□□□□ 0.34
CDK5RAP3-219ENST00000580670 TUBGCP6Q96RT7 1819 aa17.19■□□□□ 0.34
CDK5RAP3-219ENST00000580670 SURF6O75683 361 aaKnown RBP17.18■□□□□ 0.34
CDK5RAP3-219ENST00000580670 FLAD1Q8NFF5 587 aa17.18■□□□□ 0.34
CDK5RAP3-219ENST00000580670 APBB1O00213 710 aa17.17■□□□□ 0.34
CDK5RAP3-219ENST00000580670 MSH5O43196 834 aa17.17■□□□□ 0.34
CDK5RAP3-219ENST00000580670 GYS1P13807 737 aa17.17■□□□□ 0.34
CDK5RAP3-219ENST00000580670 CHD1LQ86WJ1 897 aa17.17■□□□□ 0.34
CDK5RAP3-219ENST00000580670 COL23A1Q86Y22 540 aaPredicted RBP17.17■□□□□ 0.34
CDK5RAP3-219ENST00000580670 ANO8Q9HCE9 1232 aaPredicted RBP17.17■□□□□ 0.34
CDK5RAP3-219ENST00000580670 STK32BQ9NY57 414 aa17.17■□□□□ 0.34
CDK5RAP3-219ENST00000580670 PDE8AO60658 829 aa17.17■□□□□ 0.34
CDK5RAP3-219ENST00000580670 NUTM1Q86Y26 1132 aa17.17■□□□□ 0.34
CDK5RAP3-219ENST00000580670 LNPKQ9C0E8 428 aa17.17■□□□□ 0.34
CDK5RAP3-219ENST00000580670 ZBTB47Q9UFB7 747 aaPredicted RBP17.17■□□□□ 0.34
CDK5RAP3-219ENST00000580670 RGS3P49796 1198 aa17.16■□□□□ 0.34
CDK5RAP3-219ENST00000580670 NFIXQ14938 502 aa17.16■□□□□ 0.34
CDK5RAP3-219ENST00000580670 SLC15A2Q16348 729 aa17.16■□□□□ 0.34
CDK5RAP3-219ENST00000580670 NBPF5PQ86XG9 351 aaPredicted RBP17.16■□□□□ 0.34
CDK5RAP3-219ENST00000580670 NYXQ9GZU5 481 aa17.16■□□□□ 0.34
CDK5RAP3-219ENST00000580670 PA2G4Q9UQ80 394 aaKnown RBP17.16■□□□□ 0.34
CDK5RAP3-219ENST00000580670 COL24A1Q17RW2 1714 aa17.16■□□□□ 0.34
CDK5RAP3-219ENST00000580670 PNPLA7Q6ZV29 1317 aa17.16■□□□□ 0.34
CDK5RAP3-219ENST00000580670 HCLS1P14317 486 aaPredicted RBP17.15■□□□□ 0.34
CDK5RAP3-219ENST00000580670 HSP90B1P14625 803 aaKnown RBP17.15■□□□□ 0.34
CDK5RAP3-219ENST00000580670 GTF2E1P29083 439 aaPredicted RBP17.15■□□□□ 0.34
CDK5RAP3-219ENST00000580670 CTSWP56202 376 aa17.15■□□□□ 0.34
CDK5RAP3-219ENST00000580670 NOP58Q9Y2X3 529 aaKnown RBP17.15■□□□□ 0.34
CDK5RAP3-219ENST00000580670 CSF1RP07333 972 aa17.15■□□□□ 0.34
CDK5RAP3-219ENST00000580670 RFX5P48382 616 aaPredicted RBP17.15■□□□□ 0.34
CDK5RAP3-219ENST00000580670 OS9Q13438 667 aaPredicted RBP17.15■□□□□ 0.34
CDK5RAP3-219ENST00000580670 ERFEQ4G0M1 354 aa17.15■□□□□ 0.34
CDK5RAP3-219ENST00000580670 HSP90AB4PQ58FF6 505 aa17.15■□□□□ 0.34
CDK5RAP3-219ENST00000580670 KLHDC4Q8TBB5 520 aa17.15■□□□□ 0.34
CDK5RAP3-219ENST00000580670 CARMIL3Q8ND23 1372 aa17.14■□□□□ 0.34
CDK5RAP3-219ENST00000580670 MYH3P11055 1940 aa17.14■□□□□ 0.33
CDK5RAP3-219ENST00000580670 RAB11FIP3O75154 756 aa17.14■□□□□ 0.33
CDK5RAP3-219ENST00000580670 TTLL11Q8NHH1 800 aa17.14■□□□□ 0.33
CDK5RAP3-219ENST00000580670 CCDC85AQ96PX6 553 aaPredicted RBP17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms