RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 ARAFP10398 606 aa11.96□□□□□ -0.49
SS18-214ENST00000580003 MAP3K10Q02779 954 aa11.96□□□□□ -0.49
SS18-214ENST00000580003 SPEM2Q0P670 501 aa11.96□□□□□ -0.49
SS18-214ENST00000580003 SVOPQ8N4V2 548 aa11.96□□□□□ -0.49
SS18-214ENST00000580003 ACDQ96AP0 544 aa11.96□□□□□ -0.49
SS18-214ENST00000580003 GOLGA6L1Q8N7Z2 621 aa11.95□□□□□ -0.5
SS18-214ENST00000580003 AVENQ9NQS1 362 aaPredicted RBP11.95□□□□□ -0.5
SS18-214ENST00000580003 FAM13BQ9NYF5 915 aa11.95□□□□□ -0.5
SS18-214ENST00000580003 DNMT3AQ9Y6K1 912 aaPredicted RBP11.95□□□□□ -0.5
SS18-214ENST00000580003 GRIN2CQ14957 1233 aa11.94□□□□□ -0.5
SS18-214ENST00000580003 ZNF468Q5VIY5 522 aaPredicted RBP11.94□□□□□ -0.5
SS18-214ENST00000580003 ZNF385CQ66K41 422 aaPredicted RBP11.94□□□□□ -0.5
SS18-214ENST00000580003 LYPD4Q6UWN0 246 aa11.94□□□□□ -0.5
SS18-214ENST00000580003 WHAMMQ8TF30 809 aa11.94□□□□□ -0.5
SS18-214ENST00000580003 SLC30A3Q99726 388 aa11.94□□□□□ -0.5
SS18-214ENST00000580003 OPLAHO14841 1288 aa11.93□□□□□ -0.5
SS18-214ENST00000580003 BRD1O95696 1058 aa11.93□□□□□ -0.5
SS18-214ENST00000580003 CELA2BP08218 269 aaPredicted RBP11.93□□□□□ -0.5
SS18-214ENST00000580003 BCRP11274 1271 aa11.93□□□□□ -0.5
SS18-214ENST00000580003 ADH6P28332 368 aa11.93□□□□□ -0.5
SS18-214ENST00000580003 GGA1Q9UJY5 639 aa11.93□□□□□ -0.5
SS18-214ENST00000580003 RTCBQ9Y3I0 505 aaKnown RBP11.93□□□□□ -0.5
SS18-214ENST00000580003 FAM181BA6NEQ2 426 aa11.92□□□□□ -0.5
SS18-214ENST00000580003 LORP23490 312 aaPredicted RBP11.92□□□□□ -0.5
SS18-214ENST00000580003 ZAP70P43403 619 aa11.92□□□□□ -0.5
SS18-214ENST00000580003 PCBP4P57723 403 aaKnown RBP11.92□□□□□ -0.5
SS18-214ENST00000580003 SF3B2Q13435 895 aaKnown RBP11.92□□□□□ -0.5
SS18-214ENST00000580003 RGL4Q8IZJ4 473 aa11.92□□□□□ -0.5
SS18-214ENST00000580003 PNMA5Q96PV4 448 aa11.92□□□□□ -0.5
SS18-214ENST00000580003 NEURL1BA8MQ27 555 aa11.91□□□□□ -0.5
SS18-214ENST00000580003 CCINQ13939 588 aa11.91□□□□□ -0.5
SS18-214ENST00000580003 FAM26DQ5JW98 314 aa11.91□□□□□ -0.5
SS18-214ENST00000580003 SYT9Q86SS6 491 aa11.91□□□□□ -0.5
SS18-214ENST00000580003 CMTR1Q8N1G2 835 aaKnown RBP11.91□□□□□ -0.5
SS18-214ENST00000580003 CCER1Q8TC90 406 aaPredicted RBP11.91□□□□□ -0.5
SS18-214ENST00000580003 PIK3R5Q8WYR1 880 aa11.91□□□□□ -0.5
SS18-214ENST00000580003 ENAMQ9NRM1 1142 aa11.91□□□□□ -0.5
SS18-214ENST00000580003 FKBP4Q02790 459 aaKnown RBP eCLIP11.9□□□□□ -0.5
SS18-214ENST00000580003 ZNF211Q13398 564 aaPredicted RBP11.9□□□□□ -0.5
SS18-214ENST00000580003 MTMR3Q13615 1198 aa11.9□□□□□ -0.5
SS18-214ENST00000580003 NOM1Q5C9Z4 860 aaKnown RBP11.9□□□□□ -0.5
SS18-214ENST00000580003 SLCO4C1Q6ZQN7 724 aa11.9□□□□□ -0.5
SS18-214ENST00000580003 RAB44Q7Z6P3 723 aaPredicted RBP11.9□□□□□ -0.5
SS18-214ENST00000580003 BHMTQ93088 406 aa11.9□□□□□ -0.5
SS18-214ENST00000580003 TRAIPQ9BWF2 469 aa11.9□□□□□ -0.5
SS18-214ENST00000580003 EFCC1Q9HA90 598 aa11.9□□□□□ -0.5
SS18-214ENST00000580003 C11orf16Q9NQ32 467 aa11.9□□□□□ -0.5
SS18-214ENST00000580003 USP20Q9Y2K6 914 aa11.9□□□□□ -0.5
SS18-214ENST00000580003 ZBTB39O15060 712 aa11.89□□□□□ -0.51
SS18-214ENST00000580003 OIP5O43482 229 aa11.89□□□□□ -0.51
SS18-214ENST00000580003 FAM13AO94988 1023 aa11.89□□□□□ -0.51
SS18-214ENST00000580003 MPSTP25325 297 aa11.89□□□□□ -0.51
SS18-214ENST00000580003 ALKBH2Q6NS38 261 aa11.89□□□□□ -0.51
SS18-214ENST00000580003 GSX2Q9BZM3 304 aa11.89□□□□□ -0.51
SS18-214ENST00000580003 ANO2Q9NQ90 1003 aa11.89□□□□□ -0.51
SS18-214ENST00000580003 LRRC4BQ9NT99 713 aa11.89□□□□□ -0.51
SS18-214ENST00000580003 EGFL7Q9UHF1 273 aa11.89□□□□□ -0.51
SS18-214ENST00000580003 GRNP28799 593 aaKnown RBP11.88□□□□□ -0.51
SS18-214ENST00000580003 SERPINB4P48594 390 aa11.88□□□□□ -0.51
SS18-214ENST00000580003 TXNDC2Q86VQ3 553 aa11.88□□□□□ -0.51
SS18-214ENST00000580003 GALNT6Q8NCL4 622 aa11.88□□□□□ -0.51
SS18-214ENST00000580003 STK17AQ9UEE5 414 aa11.88□□□□□ -0.51
SS18-214ENST00000580003 SIN3BO75182 1162 aa11.87□□□□□ -0.51
SS18-214ENST00000580003 PDIA4P13667 645 aaKnown RBP11.87□□□□□ -0.51
SS18-214ENST00000580003 AAMPQ13685 434 aa11.87□□□□□ -0.51
SS18-214ENST00000580003 GPR152Q8TDT2 470 aa11.87□□□□□ -0.51
SS18-214ENST00000580003 EDARADDQ8WWZ3 215 aa11.87□□□□□ -0.51
SS18-214ENST00000580003 KLF15Q9UIH9 416 aa11.87□□□□□ -0.51
SS18-214ENST00000580003 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.87□□□□□ -0.51
SS18-214ENST00000580003 XYLBO75191 536 aa11.86□□□□□ -0.51
SS18-214ENST00000580003 EIF1AXP47813 144 aaKnown RBP11.86□□□□□ -0.51
SS18-214ENST00000580003 NEDD1Q8NHV4 660 aa11.86□□□□□ -0.51
SS18-214ENST00000580003 EPXP11678 715 aa11.85□□□□□ -0.51
SS18-214ENST00000580003 NFKB1P19838 968 aa11.85□□□□□ -0.51
SS18-214ENST00000580003 KRT25Q7Z3Z0 450 aa11.85□□□□□ -0.51
SS18-214ENST00000580003 ATCAYQ86WG3 371 aa11.85□□□□□ -0.51
SS18-214ENST00000580003 FCHSD1Q86WN1 690 aa11.85□□□□□ -0.51
SS18-214ENST00000580003 FNDC3AQ9Y2H6 1198 aaKnown RBP11.85□□□□□ -0.51
SS18-214ENST00000580003 H3BRB1 525 aa11.84□□□□□ -0.51
SS18-214ENST00000580003 ICMTO60725 284 aa11.84□□□□□ -0.51
SS18-214ENST00000580003 ARHGEF15O94989 841 aa11.84□□□□□ -0.51
SS18-214ENST00000580003 PCSK2P16519 638 aa11.84□□□□□ -0.51
SS18-214ENST00000580003 NPR3P17342 541 aa11.84□□□□□ -0.51
SS18-214ENST00000580003 C1orf229Q6ZS94 237 aaPredicted RBP11.84□□□□□ -0.51
SS18-214ENST00000580003 GLYCTKQ8IVS8 523 aa11.84□□□□□ -0.51
SS18-214ENST00000580003 TUT1Q9H6E5 874 aaKnown RBP11.84□□□□□ -0.51
SS18-214ENST00000580003 KCNMB2Q9Y691 235 aa11.84□□□□□ -0.51
SS18-214ENST00000580003 UBAP1LF5GYI3 381 aa11.83□□□□□ -0.52
SS18-214ENST00000580003 SASH3O75995 380 aa11.83□□□□□ -0.52
SS18-214ENST00000580003 EGFRP00533 1210 aa11.83□□□□□ -0.52
SS18-214ENST00000580003 AMPD1P23109 780 aa11.83□□□□□ -0.52
SS18-214ENST00000580003 TTC16Q8NEE8 873 aa11.83□□□□□ -0.52
SS18-214ENST00000580003 RPLP1P05386 114 aaKnown RBP11.82□□□□□ -0.52
SS18-214ENST00000580003 RARAP10276 462 aa11.82□□□□□ -0.52
SS18-214ENST00000580003 ALAS2P22557 587 aa11.82□□□□□ -0.52
SS18-214ENST00000580003 DNM1Q05193 864 aaKnown RBP11.82□□□□□ -0.52
SS18-214ENST00000580003 TBC1D8BQ0IIM8 1120 aa11.82□□□□□ -0.52
SS18-214ENST00000580003 EDEM1Q92611 657 aa11.82□□□□□ -0.52
SS18-214ENST00000580003 IGFLR1Q9H665 355 aa11.82□□□□□ -0.52
SS18-214ENST00000580003 ELOA3CA0A087WX78 387 aaPredicted RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms