RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 IARSP41252 1262 aaKnown RBP13.1□□□□□ -0.31
SS18-207ENST00000577636 WDR63Q8IWG1 891 aa13.1□□□□□ -0.31
SS18-207ENST00000577636 CDCA7LQ96GN5 454 aa13.1□□□□□ -0.31
SS18-207ENST00000577636 COL11A2P13942 1736 aaPredicted RBP13.1□□□□□ -0.31
SS18-207ENST00000577636 VIRMAQ69YN4 1812 aaKnown RBP13.09□□□□□ -0.31
SS18-207ENST00000577636 SNRPA1P09661 255 aaKnown RBP13.09□□□□□ -0.31
SS18-207ENST00000577636 ALDH1B1P30837 517 aa13.09□□□□□ -0.31
SS18-207ENST00000577636 MCM10Q7L590 875 aa13.09□□□□□ -0.31
SS18-207ENST00000577636 PNMA8AQ86V59 439 aaPredicted RBP13.09□□□□□ -0.31
SS18-207ENST00000577636 WWC1Q8IX03 1113 aa13.09□□□□□ -0.31
SS18-207ENST00000577636 MYH16Q9H6N6 1097 aa13.09□□□□□ -0.31
SS18-207ENST00000577636 DICER1Q9UPY3 1922 aaKnown RBP13.09□□□□□ -0.31
SS18-207ENST00000577636 WDR33Q9C0J8 1336 aaKnown RBP13.09□□□□□ -0.31
SS18-207ENST00000577636 UBR2Q8IWV8 1755 aa13.08□□□□□ -0.32
SS18-207ENST00000577636 TCERG1O14776 1098 aaKnown RBP13.08□□□□□ -0.32
SS18-207ENST00000577636 HSPA8P11142 646 aaKnown RBP13.08□□□□□ -0.32
SS18-207ENST00000577636 CALD1Q05682 793 aaKnown RBP13.08□□□□□ -0.32
SS18-207ENST00000577636 SLFN5Q08AF3 891 aa13.08□□□□□ -0.32
SS18-207ENST00000577636 DCTN1Q14203 1278 aa13.08□□□□□ -0.32
SS18-207ENST00000577636 HLFQ16534 295 aa13.08□□□□□ -0.32
SS18-207ENST00000577636 JDP2Q8WYK2 163 aa13.08□□□□□ -0.32
SS18-207ENST00000577636 RRP7AQ9Y3A4 280 aaKnown RBP13.08□□□□□ -0.32
SS18-207ENST00000577636 CACNA1SQ13698 1873 aa13.08□□□□□ -0.32
SS18-207ENST00000577636 FZD9O00144 591 aa13.07□□□□□ -0.32
SS18-207ENST00000577636 EIF6P56537 245 aaKnown RBP13.07□□□□□ -0.32
SS18-207ENST00000577636 MAP2K1Q02750 393 aaPredicted RBP13.07□□□□□ -0.32
SS18-207ENST00000577636 FMR1Q06787 632 aaKnown RBP eCLIP13.07□□□□□ -0.32
SS18-207ENST00000577636 LMOD3Q0VAK6 560 aa13.07□□□□□ -0.32
SS18-207ENST00000577636 NUTM1Q86Y26 1132 aa13.07□□□□□ -0.32
SS18-207ENST00000577636 ABHD8Q96I13 439 aa13.07□□□□□ -0.32
SS18-207ENST00000577636 PLEKHF1Q96S99 279 aa13.07□□□□□ -0.32
SS18-207ENST00000577636 SCN7AQ01118 1682 aa13.06□□□□□ -0.32
SS18-207ENST00000577636 KLRG2A4D1S0 409 aaPredicted RBP13.06□□□□□ -0.32
SS18-207ENST00000577636 RASSF10A6NK89 507 aa13.06□□□□□ -0.32
SS18-207ENST00000577636 CCDC85CA6NKD9 419 aa13.06□□□□□ -0.32
SS18-207ENST00000577636 NBPF26B4DH59 902 aa13.06□□□□□ -0.32
SS18-207ENST00000577636 LMOD1P29536 600 aaPredicted RBP13.06□□□□□ -0.32
SS18-207ENST00000577636 TMPOP42166 694 aaKnown RBP13.06□□□□□ -0.32
SS18-207ENST00000577636 RIPK4P57078 832 aa13.06□□□□□ -0.32
SS18-207ENST00000577636 FAM161AQ3B820 660 aa13.06□□□□□ -0.32
SS18-207ENST00000577636 NBPF10Q6P3W6 841 aaKnown RBP13.06□□□□□ -0.32
SS18-207ENST00000577636 GPC2Q8N158 579 aa13.06□□□□□ -0.32
SS18-207ENST00000577636 NBPF15Q8N660 670 aa13.06□□□□□ -0.32
SS18-207ENST00000577636 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.06□□□□□ -0.32
SS18-207ENST00000577636 RSPH6AQ9H0K4 717 aa13.06□□□□□ -0.32
SS18-207ENST00000577636 DDX21Q9NR30 783 aaKnown RBP eCLIP13.06□□□□□ -0.32
SS18-207ENST00000577636 MIS18AQ9NYP9 233 aa13.06□□□□□ -0.32
SS18-207ENST00000577636 CEMIPQ8WUJ3 1361 aa13.06□□□□□ -0.32
SS18-207ENST00000577636 DUSP27Q5VZP5 1158 aa13.05□□□□□ -0.32
SS18-207ENST00000577636 BEGAINQ9BUH8 593 aa13.05□□□□□ -0.32
SS18-207ENST00000577636 EPS15P42566 896 aa13.04□□□□□ -0.32
SS18-207ENST00000577636 CYP4F22Q6NT55 531 aa13.04□□□□□ -0.32
SS18-207ENST00000577636 LARGE2Q8N3Y3 721 aa13.04□□□□□ -0.32
SS18-207ENST00000577636 RPGRQ92834 1020 aaKnown RBP13.04□□□□□ -0.32
SS18-207ENST00000577636 GPTP24298 496 aa13.03□□□□□ -0.32
SS18-207ENST00000577636 RRP1P56182 461 aaKnown RBP13.03□□□□□ -0.32
SS18-207ENST00000577636 NFE2L2Q16236 605 aa13.03□□□□□ -0.32
SS18-207ENST00000577636 TRMT2AQ8IZ69 625 aaKnown RBP13.03□□□□□ -0.32
SS18-207ENST00000577636 CAPNS2Q96L46 248 aa13.03□□□□□ -0.32
SS18-207ENST00000577636 CFAP44Q96MT7 982 aa13.03□□□□□ -0.32
SS18-207ENST00000577636 GPR101Q96P66 508 aaPredicted RBP13.03□□□□□ -0.32
SS18-207ENST00000577636 NYXQ9GZU5 481 aa13.03□□□□□ -0.32
SS18-207ENST00000577636 TSKSQ9UJT2 592 aa13.03□□□□□ -0.32
SS18-207ENST00000577636 SCN4AP35499 1836 aa13.03□□□□□ -0.32
SS18-207ENST00000577636 IL16Q14005 1332 aa13.03□□□□□ -0.32
SS18-207ENST00000577636 TRAF5O00463 557 aa13.02□□□□□ -0.33
SS18-207ENST00000577636 MYL6BP14649 208 aa13.02□□□□□ -0.33
SS18-207ENST00000577636 ECE1P42892 770 aa13.02□□□□□ -0.33
SS18-207ENST00000577636 IRX6P78412 446 aaPredicted RBP13.02□□□□□ -0.33
SS18-207ENST00000577636 TAF7Q15545 349 aaPredicted RBP13.02□□□□□ -0.33
SS18-207ENST00000577636 SLC51AQ86UW1 340 aa13.02□□□□□ -0.33
SS18-207ENST00000577636 POTEDQ86YR6 584 aa13.02□□□□□ -0.33
SS18-207ENST00000577636 PSMD1Q99460 953 aa13.02□□□□□ -0.33
SS18-207ENST00000577636 NIM1KQ8IY84 436 aa13.01□□□□□ -0.33
SS18-207ENST00000577636 RBM17Q96I25 401 aaKnown RBP13.01□□□□□ -0.33
SS18-207ENST00000577636 ZBTB3Q9H5J0 574 aa13.01□□□□□ -0.33
SS18-207ENST00000577636 PPP4R2Q9NY27 417 aa13.01□□□□□ -0.33
SS18-207ENST00000577636 ABCC12Q96J65 1359 aa13□□□□□ -0.33
SS18-207ENST00000577636 AOC2O75106 756 aa13□□□□□ -0.33
SS18-207ENST00000577636 SCNN1DP51172 638 aa13□□□□□ -0.33
SS18-207ENST00000577636 SUSD4Q5VX71 490 aa13□□□□□ -0.33
SS18-207ENST00000577636 CST9Q5W186 159 aa13□□□□□ -0.33
SS18-207ENST00000577636 CC2D2BQ6DHV5 1058 aa13□□□□□ -0.33
SS18-207ENST00000577636 KIF6Q6ZMV9 814 aa13□□□□□ -0.33
SS18-207ENST00000577636 TTLL7Q6ZT98 887 aa13□□□□□ -0.33
SS18-207ENST00000577636 TMX4Q9H1E5 349 aaPredicted RBP13□□□□□ -0.33
SS18-207ENST00000577636 PPEF1O14829 653 aaPredicted RBP12.99□□□□□ -0.33
SS18-207ENST00000577636 PPIP5K2O43314 1243 aa12.99□□□□□ -0.33
SS18-207ENST00000577636 CT47B1P0C2W7 299 aaPredicted RBP12.99□□□□□ -0.33
SS18-207ENST00000577636 AOC3Q16853 763 aa12.99□□□□□ -0.33
SS18-207ENST00000577636 CRY2Q49AN0 593 aa12.99□□□□□ -0.33
SS18-207ENST00000577636 USP50Q70EL3 339 aaPredicted RBP12.99□□□□□ -0.33
SS18-207ENST00000577636 ZNF408Q9H9D4 720 aa12.99□□□□□ -0.33
SS18-207ENST00000577636 SIPA1L3O60292 1781 aaPredicted RBP12.99□□□□□ -0.33
SS18-207ENST00000577636 BCORQ6W2J9 1755 aa12.99□□□□□ -0.33
SS18-207ENST00000577636 MAP3K15Q6ZN16 1313 aa12.98□□□□□ -0.33
SS18-207ENST00000577636 ERVV-1B6SEH8 477 aa12.98□□□□□ -0.33
SS18-207ENST00000577636 RGL2O15211 777 aa12.98□□□□□ -0.33
SS18-207ENST00000577636 MLLT1Q03111 559 aaPredicted RBP12.98□□□□□ -0.33
SS18-207ENST00000577636 TRIM35Q9UPQ4 493 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms