RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 SLC30A3Q99726 388 aa10.03□□□□□ -0.8
NUP88-213ENST00000576862 ARSDP51689 593 aa10.02□□□□□ -0.81
NUP88-213ENST00000576862 ZNF211Q13398 564 aaPredicted RBP10.02□□□□□ -0.81
NUP88-213ENST00000576862 WHAMMQ8TF30 809 aa10.02□□□□□ -0.81
NUP88-213ENST00000576862 ACDQ96AP0 544 aa10.02□□□□□ -0.81
NUP88-213ENST00000576862 NSFL1CQ9UNZ2 370 aaKnown RBP10.02□□□□□ -0.81
NUP88-213ENST00000576862 MTMR7Q9Y216 660 aa10.02□□□□□ -0.81
NUP88-213ENST00000576862 USP20Q9Y2K6 914 aa10.02□□□□□ -0.81
NUP88-213ENST00000576862 ANO2Q9NQ90 1003 aa10.01□□□□□ -0.81
NUP88-213ENST00000576862 KLF15Q9UIH9 416 aa10.01□□□□□ -0.81
NUP88-213ENST00000576862 ABL1P00519 1130 aa10□□□□□ -0.81
NUP88-213ENST00000576862 NPR3P17342 541 aa10□□□□□ -0.81
NUP88-213ENST00000576862 MPSTP25325 297 aa10□□□□□ -0.81
NUP88-213ENST00000576862 SPEM2Q0P670 501 aa10□□□□□ -0.81
NUP88-213ENST00000576862 LYPD4Q6UWN0 246 aa10□□□□□ -0.81
NUP88-213ENST00000576862 ABTB2Q8N961 1025 aa10□□□□□ -0.81
NUP88-213ENST00000576862 ZAP70P43403 619 aa9.99□□□□□ -0.81
NUP88-213ENST00000576862 ZNF385CQ66K41 422 aaPredicted RBP9.99□□□□□ -0.81
NUP88-213ENST00000576862 EGFL7Q9UHF1 273 aa9.99□□□□□ -0.81
NUP88-213ENST00000576862 RTCBQ9Y3I0 505 aaKnown RBP9.99□□□□□ -0.81
NUP88-213ENST00000576862 ARAFP10398 606 aa9.98□□□□□ -0.81
NUP88-213ENST00000576862 INSM1Q01101 510 aaPredicted RBP9.98□□□□□ -0.81
NUP88-213ENST00000576862 FKBP4Q02790 459 aaKnown RBP eCLIP9.98□□□□□ -0.81
NUP88-213ENST00000576862 SF3B2Q13435 895 aaKnown RBP9.98□□□□□ -0.81
NUP88-213ENST00000576862 ECM1Q16610 540 aa9.98□□□□□ -0.81
NUP88-213ENST00000576862 ZNF468Q5VIY5 522 aaPredicted RBP9.98□□□□□ -0.81
NUP88-213ENST00000576862 C1orf229Q6ZS94 237 aaPredicted RBP9.98□□□□□ -0.81
NUP88-213ENST00000576862 RAB44Q7Z6P3 723 aaPredicted RBP9.98□□□□□ -0.81
NUP88-213ENST00000576862 ATCAYQ86WG3 371 aa9.98□□□□□ -0.81
NUP88-213ENST00000576862 RGL4Q8IZJ4 473 aa9.98□□□□□ -0.81
NUP88-213ENST00000576862 ZSCAN1Q8NBB4 408 aa9.98□□□□□ -0.81
NUP88-213ENST00000576862 OXCT2Q9BYC2 517 aaPredicted RBP9.98□□□□□ -0.81
NUP88-213ENST00000576862 GSX2Q9BZM3 304 aa9.98□□□□□ -0.81
NUP88-213ENST00000576862 GNEQ9Y223 722 aaKnown RBP9.98□□□□□ -0.81
NUP88-213ENST00000576862 KCNMB2Q9Y691 235 aa9.98□□□□□ -0.81
NUP88-213ENST00000576862 ICMTO60725 284 aa9.97□□□□□ -0.81
NUP88-213ENST00000576862 CELA2BP08218 269 aaPredicted RBP9.97□□□□□ -0.81
NUP88-213ENST00000576862 EPB42P16452 691 aa9.97□□□□□ -0.81
NUP88-213ENST00000576862 PRR12Q9ULL5 1215 aa9.97□□□□□ -0.81
NUP88-213ENST00000576862 EIF1AXP47813 144 aaKnown RBP9.96□□□□□ -0.82
NUP88-213ENST00000576862 PCBP4P57723 403 aaKnown RBP9.96□□□□□ -0.82
NUP88-213ENST00000576862 NOM1Q5C9Z4 860 aaKnown RBP9.96□□□□□ -0.82
NUP88-213ENST00000576862 SYT9Q86SS6 491 aa9.96□□□□□ -0.82
NUP88-213ENST00000576862 CCER1Q8TC90 406 aaPredicted RBP9.96□□□□□ -0.82
NUP88-213ENST00000576862 AVENQ9NQS1 362 aaPredicted RBP9.96□□□□□ -0.82
NUP88-213ENST00000576862 GGA1Q9UJY5 639 aa9.96□□□□□ -0.82
NUP88-213ENST00000576862 PDIA4P13667 645 aaKnown RBP9.95□□□□□ -0.82
NUP88-213ENST00000576862 CCINQ13939 588 aa9.95□□□□□ -0.82
NUP88-213ENST00000576862 TRIP4Q15650 581 aaPredicted RBP9.95□□□□□ -0.82
NUP88-213ENST00000576862 CMTR1Q8N1G2 835 aaKnown RBP9.95□□□□□ -0.82
NUP88-213ENST00000576862 GPR152Q8TDT2 470 aa9.95□□□□□ -0.82
NUP88-213ENST00000576862 C11orf16Q9NQ32 467 aa9.95□□□□□ -0.82
NUP88-213ENST00000576862 NEURL1BA8MQ27 555 aa9.94□□□□□ -0.82
NUP88-213ENST00000576862 EGFRP00533 1210 aa9.94□□□□□ -0.82
NUP88-213ENST00000576862 BCRP11274 1271 aa9.94□□□□□ -0.82
NUP88-213ENST00000576862 KCNA1Q09470 495 aa9.94□□□□□ -0.82
NUP88-213ENST00000576862 FCHSD1Q86WN1 690 aa9.94□□□□□ -0.82
NUP88-213ENST00000576862 GOLGA6L1Q8N7Z2 621 aa9.94□□□□□ -0.82
NUP88-213ENST00000576862 BHMTQ93088 406 aa9.94□□□□□ -0.82
NUP88-213ENST00000576862 GDF2Q9UK05 429 aaPredicted RBP9.94□□□□□ -0.82
NUP88-213ENST00000576862 H3BRB1 525 aa9.93□□□□□ -0.82
NUP88-213ENST00000576862 OIP5O43482 229 aa9.93□□□□□ -0.82
NUP88-213ENST00000576862 FAM13AO94988 1023 aa9.93□□□□□ -0.82
NUP88-213ENST00000576862 ARHGEF15O94989 841 aa9.93□□□□□ -0.82
NUP88-213ENST00000576862 ADH6P28332 368 aa9.93□□□□□ -0.82
NUP88-213ENST00000576862 SLCO4C1Q6ZQN7 724 aa9.93□□□□□ -0.82
NUP88-213ENST00000576862 SVOPQ8N4V2 548 aa9.93□□□□□ -0.82
NUP88-213ENST00000576862 MDFIQ99750 246 aa9.93□□□□□ -0.82
NUP88-213ENST00000576862 TUT1Q9H6E5 874 aaKnown RBP9.93□□□□□ -0.82
NUP88-213ENST00000576862 SIN3BO75182 1162 aa9.92□□□□□ -0.82
NUP88-213ENST00000576862 PIK3R5Q8WYR1 880 aa9.92□□□□□ -0.82
NUP88-213ENST00000576862 LRRC4BQ9NT99 713 aa9.92□□□□□ -0.82
NUP88-213ENST00000576862 FAM13BQ9NYF5 915 aa9.92□□□□□ -0.82
NUP88-213ENST00000576862 ZFATQ9P243 1243 aa9.92□□□□□ -0.82
NUP88-213ENST00000576862 IVNS1ABPQ9Y6Y0 642 aa9.92□□□□□ -0.82
NUP88-213ENST00000576862 SOWAHDA6NJG2 315 aa9.91□□□□□ -0.82
NUP88-213ENST00000576862 SHISA8B8ZZ34 492 aa9.91□□□□□ -0.82
NUP88-213ENST00000576862 FZD6O60353 706 aa9.91□□□□□ -0.82
NUP88-213ENST00000576862 XYLBO75191 536 aa9.91□□□□□ -0.82
NUP88-213ENST00000576862 SASH3O75995 380 aa9.91□□□□□ -0.82
NUP88-213ENST00000576862 NFKB1P19838 968 aa9.91□□□□□ -0.82
NUP88-213ENST00000576862 TARSP26639 723 aaKnown RBP9.91□□□□□ -0.82
NUP88-213ENST00000576862 ARHGAP4P98171 946 aa9.91□□□□□ -0.82
NUP88-213ENST00000576862 KRT25Q7Z3Z0 450 aa9.91□□□□□ -0.82
NUP88-213ENST00000576862 GLYCTKQ8IVS8 523 aa9.91□□□□□ -0.82
NUP88-213ENST00000576862 EDEM1Q92611 657 aa9.91□□□□□ -0.82
NUP88-213ENST00000576862 EFCC1Q9HA90 598 aa9.91□□□□□ -0.82
NUP88-213ENST00000576862 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.91□□□□□ -0.82
NUP88-213ENST00000576862 PDGFAP04085 211 aa9.9□□□□□ -0.82
NUP88-213ENST00000576862 EPXP11678 715 aa9.9□□□□□ -0.82
NUP88-213ENST00000576862 DNM1Q05193 864 aaKnown RBP9.9□□□□□ -0.82
NUP88-213ENST00000576862 ALKBH2Q6NS38 261 aa9.9□□□□□ -0.82
NUP88-213ENST00000576862 GALNT6Q8NCL4 622 aa9.9□□□□□ -0.82
NUP88-213ENST00000576862 EDARADDQ8WWZ3 215 aa9.9□□□□□ -0.82
NUP88-213ENST00000576862 NUDT16Q96DE0 195 aaKnown RBP9.9□□□□□ -0.82
NUP88-213ENST00000576862 MZF1P28698 734 aaPredicted RBP9.89□□□□□ -0.83
NUP88-213ENST00000576862 NEUROD1Q13562 356 aa9.89□□□□□ -0.83
NUP88-213ENST00000576862 TNFRSF25Q93038 417 aa9.89□□□□□ -0.83
NUP88-213ENST00000576862 PNMA5Q96PV4 448 aa9.89□□□□□ -0.83
NUP88-213ENST00000576862 CCDC87Q9NVE4 849 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms