RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 DGKZQ13574 1117 aa6.34□□□□□ -1.39
NUP88-209ENST00000574855 GRIN2CQ14957 1233 aa6.34□□□□□ -1.39
NUP88-209ENST00000574855 C11orf91Q3C1V1 193 aa6.34□□□□□ -1.39
NUP88-209ENST00000574855 FCHSD1Q86WN1 690 aa6.34□□□□□ -1.39
NUP88-209ENST00000574855 CCDC82Q8N4S0 544 aa6.34□□□□□ -1.39
NUP88-209ENST00000574855 KLK14Q9P0G3 267 aa6.34□□□□□ -1.39
NUP88-209ENST00000574855 MKL2Q9ULH7 1088 aa6.34□□□□□ -1.39
NUP88-209ENST00000574855 PIK3R2O00459 728 aa6.33□□□□□ -1.4
NUP88-209ENST00000574855 SIN3BO75182 1162 aa6.33□□□□□ -1.4
NUP88-209ENST00000574855 SNRPNP63162 240 aaKnown RBP6.33□□□□□ -1.4
NUP88-209ENST00000574855 FKBP5Q13451 457 aaPredicted RBP6.33□□□□□ -1.4
NUP88-209ENST00000574855 TMEM164Q5U3C3 297 aa6.33□□□□□ -1.4
NUP88-209ENST00000574855 MYO19Q96H55 970 aa6.33□□□□□ -1.4
NUP88-209ENST00000574855 SLC30A3Q99726 388 aa6.33□□□□□ -1.4
NUP88-209ENST00000574855 QTRT2Q9H974 415 aaKnown RBP6.33□□□□□ -1.4
NUP88-209ENST00000574855 BCS1LQ9Y276 419 aa6.33□□□□□ -1.4
NUP88-209ENST00000574855 ELOA3CA0A087WX78 387 aaPredicted RBP6.32□□□□□ -1.4
NUP88-209ENST00000574855 ELOA3DA6NLF2 546 aaPredicted RBP6.32□□□□□ -1.4
NUP88-209ENST00000574855 PPP1R15AO75807 674 aaPredicted RBP6.32□□□□□ -1.4
NUP88-209ENST00000574855 EPB42P16452 691 aa6.32□□□□□ -1.4
NUP88-209ENST00000574855 OCLNQ16625 522 aa6.32□□□□□ -1.4
NUP88-209ENST00000574855 ELOA3BQ3SY89 546 aa6.32□□□□□ -1.4
NUP88-209ENST00000574855 ELOA3Q8NG57 546 aa6.32□□□□□ -1.4
NUP88-209ENST00000574855 EFCC1Q9HA90 598 aa6.32□□□□□ -1.4
NUP88-209ENST00000574855 DMGDHQ9UI17 866 aaKnown RBP6.32□□□□□ -1.4
NUP88-209ENST00000574855 CHSY3Q70JA7 882 aa6.31□□□□□ -1.4
NUP88-209ENST00000574855 COL26A1Q96A83 441 aa6.31□□□□□ -1.4
NUP88-209ENST00000574855 IFT43Q96FT9 208 aa6.31□□□□□ -1.4
NUP88-209ENST00000574855 C1orf115Q9H7X2 142 aa6.31□□□□□ -1.4
NUP88-209ENST00000574855 CXXC1Q9P0U4 656 aaPredicted RBP6.31□□□□□ -1.4
NUP88-209ENST00000574855 ADARB2-AS1A8MUL3 147 aa6.3□□□□□ -1.4
NUP88-209ENST00000574855 PTCD1O75127 700 aaKnown RBP6.3□□□□□ -1.4
NUP88-209ENST00000574855 MICAL2O94851 1124 aa6.3□□□□□ -1.4
NUP88-209ENST00000574855 INPP5BP32019 993 aa6.3□□□□□ -1.4
NUP88-209ENST00000574855 IDH3AP50213 366 aa6.3□□□□□ -1.4
NUP88-209ENST00000574855 RAB44Q7Z6P3 723 aaPredicted RBP6.3□□□□□ -1.4
NUP88-209ENST00000574855 CLP1Q92989 425 aaKnown RBP6.3□□□□□ -1.4
NUP88-209ENST00000574855 TNFRSF25Q93038 417 aa6.3□□□□□ -1.4
NUP88-209ENST00000574855 BHMTQ93088 406 aa6.3□□□□□ -1.4
NUP88-209ENST00000574855 PNMA5Q96PV4 448 aa6.3□□□□□ -1.4
NUP88-209ENST00000574855 GSX2Q9BZM3 304 aa6.3□□□□□ -1.4
NUP88-209ENST00000574855 LRFN2Q9ULH4 789 aa6.3□□□□□ -1.4
NUP88-209ENST00000574855 GNB5O14775 395 aa6.29□□□□□ -1.4
NUP88-209ENST00000574855 HOXB4P17483 251 aaPredicted RBP6.29□□□□□ -1.4
NUP88-209ENST00000574855 DGKGP49619 791 aa6.29□□□□□ -1.4
NUP88-209ENST00000574855 ARSDP51689 593 aa6.29□□□□□ -1.4
NUP88-209ENST00000574855 CCINQ13939 588 aa6.29□□□□□ -1.4
NUP88-209ENST00000574855 COX20Q5RI15 118 aa6.29□□□□□ -1.4
NUP88-209ENST00000574855 LINC00114Q6XXX2 140 aa6.29□□□□□ -1.4
NUP88-209ENST00000574855 KCTD17Q8N5Z5 321 aa6.29□□□□□ -1.4
NUP88-209ENST00000574855 C11orf16Q9NQ32 467 aa6.29□□□□□ -1.4
NUP88-209ENST00000574855 BRD2P25440 801 aaKnown RBP6.28□□□□□ -1.4
NUP88-209ENST00000574855 C16orf46Q6P387 395 aa6.28□□□□□ -1.4
NUP88-209ENST00000574855 ALYREFQ86V81 257 aaKnown RBP6.28□□□□□ -1.4
NUP88-209ENST00000574855 MDFIQ99750 246 aa6.28□□□□□ -1.4
NUP88-209ENST00000574855 MKNK1Q9BUB5 465 aa6.28□□□□□ -1.4
NUP88-209ENST00000574855 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.28□□□□□ -1.4
NUP88-209ENST00000574855 OPLAHO14841 1288 aa6.27□□□□□ -1.41
NUP88-209ENST00000574855 ATP2B4P23634 1241 aa6.27□□□□□ -1.41
NUP88-209ENST00000574855 ADH7P40394 386 aa6.27□□□□□ -1.41
NUP88-209ENST00000574855 NAA30Q147X3 362 aaPredicted RBP6.27□□□□□ -1.41
NUP88-209ENST00000574855 TREML1Q86YW5 311 aa6.27□□□□□ -1.41
NUP88-209ENST00000574855 DCAF5Q96JK2 942 aa6.27□□□□□ -1.41
NUP88-209ENST00000574855 IGFLR1Q9H665 355 aa6.27□□□□□ -1.41
NUP88-209ENST00000574855 NOP53Q9NZM5 478 aaKnown RBP6.27□□□□□ -1.41
NUP88-209ENST00000574855 TBC1D8BQ0IIM8 1120 aa6.26□□□□□ -1.41
NUP88-209ENST00000574855 CAPN12Q6ZSI9 719 aa6.26□□□□□ -1.41
NUP88-209ENST00000574855 KRTAP4-8Q9BYQ9 185 aa6.26□□□□□ -1.41
NUP88-209ENST00000574855 UBE2OQ9C0C9 1292 aaKnown RBP6.26□□□□□ -1.41
NUP88-209ENST00000574855 SAP130Q9H0E3 1048 aa6.26□□□□□ -1.41
NUP88-209ENST00000574855 RTCBQ9Y3I0 505 aaKnown RBP6.26□□□□□ -1.41
NUP88-209ENST00000574855 M0R082 166 aa6.25□□□□□ -1.41
NUP88-209ENST00000574855 NFKB1P19838 968 aa6.25□□□□□ -1.41
NUP88-209ENST00000574855 GRNP28799 593 aaKnown RBP6.25□□□□□ -1.41
NUP88-209ENST00000574855 PCSK7Q16549 785 aa6.25□□□□□ -1.41
NUP88-209ENST00000574855 ZNF417Q8TAU3 575 aa6.25□□□□□ -1.41
NUP88-209ENST00000574855 ZNF587Q96SQ5 575 aaPredicted RBP6.25□□□□□ -1.41
NUP88-209ENST00000574855 MAP3K6O95382 1288 aa6.24□□□□□ -1.41
NUP88-209ENST00000574855 IGHA1P01876 353 aa6.24□□□□□ -1.41
NUP88-209ENST00000574855 GPAT2Q6NUI2 795 aa6.24□□□□□ -1.41
NUP88-209ENST00000574855 RGL4Q8IZJ4 473 aa6.24□□□□□ -1.41
NUP88-209ENST00000574855 CMTR1Q8N1G2 835 aaKnown RBP6.24□□□□□ -1.41
NUP88-209ENST00000574855 MICALL1Q8N3F8 863 aa6.24□□□□□ -1.41
NUP88-209ENST00000574855 SUV39H2Q9H5I1 410 aa6.24□□□□□ -1.41
NUP88-209ENST00000574855 PRDM6Q9NQX0 595 aa6.24□□□□□ -1.41
NUP88-209ENST00000574855 FAM13BQ9NYF5 915 aa6.24□□□□□ -1.41
NUP88-209ENST00000574855 SLAIN2Q9P270 581 aa6.24□□□□□ -1.41
NUP88-209ENST00000574855 STARD13Q9Y3M8 1113 aa6.24□□□□□ -1.41
NUP88-209ENST00000574855 SPDYE3A6NKU9 549 aa6.23□□□□□ -1.41
NUP88-209ENST00000574855 XYLBO75191 536 aa6.23□□□□□ -1.41
NUP88-209ENST00000574855 SASH3O75995 380 aa6.23□□□□□ -1.41
NUP88-209ENST00000574855 TARSP26639 723 aaKnown RBP6.23□□□□□ -1.41
NUP88-209ENST00000574855 COL8A1P27658 744 aa6.23□□□□□ -1.41
NUP88-209ENST00000574855 ARID4AP29374 1257 aaPredicted RBP6.23□□□□□ -1.41
NUP88-209ENST00000574855 KRT25Q7Z3Z0 450 aa6.23□□□□□ -1.41
NUP88-209ENST00000574855 ETFBKMTQ8IXQ9 262 aa6.23□□□□□ -1.41
NUP88-209ENST00000574855 PLVAPQ9BX97 442 aa6.23□□□□□ -1.41
NUP88-209ENST00000574855 DNAJB12Q9NXW2 375 aaKnown RBP6.23□□□□□ -1.41
NUP88-209ENST00000574855 STIM2Q9P246 746 aa6.23□□□□□ -1.41
NUP88-209ENST00000574855 SLC6A14Q9UN76 642 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms