RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 BEND3Q5T5X7 828 aa10.72□□□□□ -0.69
SF3B3-212ENST00000568539 INTS3Q68E01 1043 aaKnown RBP10.72□□□□□ -0.69
SF3B3-212ENST00000568539 SLC4A10Q6U841 1118 aa10.72□□□□□ -0.69
SF3B3-212ENST00000568539 PANK1Q8TE04 598 aa10.72□□□□□ -0.69
SF3B3-212ENST00000568539 MYD88Q99836 296 aa10.72□□□□□ -0.69
SF3B3-212ENST00000568539 CREBZFQ9NS37 354 aa10.72□□□□□ -0.69
SF3B3-212ENST00000568539 ZNF652Q9Y2D9 606 aa10.72□□□□□ -0.69
SF3B3-212ENST00000568539 IGKV5-2P06315 115 aa10.71□□□□□ -0.69
SF3B3-212ENST00000568539 CCT4P50991 539 aaKnown RBP10.71□□□□□ -0.69
SF3B3-212ENST00000568539 SCN7AQ01118 1682 aa10.71□□□□□ -0.69
SF3B3-212ENST00000568539 NEXNQ0ZGT2 675 aa10.71□□□□□ -0.69
SF3B3-212ENST00000568539 HSP90AB3PQ58FF7 597 aa10.71□□□□□ -0.69
SF3B3-212ENST00000568539 UBR3Q6ZT12 1888 aa10.71□□□□□ -0.69
SF3B3-212ENST00000568539 FTSJ3Q8IY81 847 aaKnown RBP10.71□□□□□ -0.69
SF3B3-212ENST00000568539 ZNF34Q8IZ26 560 aa10.71□□□□□ -0.69
SF3B3-212ENST00000568539 TMEM57Q8N5G2 664 aa10.71□□□□□ -0.69
SF3B3-212ENST00000568539 LINS1Q8NG48 757 aa10.71□□□□□ -0.69
SF3B3-212ENST00000568539 ISCA1Q9BUE6 129 aa10.71□□□□□ -0.69
SF3B3-212ENST00000568539 PDGFDQ9GZP0 370 aaPredicted RBP10.71□□□□□ -0.69
SF3B3-212ENST00000568539 CIZ1Q9ULV3 898 aaPredicted RBP10.71□□□□□ -0.69
SF3B3-212ENST00000568539 IBTKQ9P2D0 1353 aaPredicted RBP10.7□□□□□ -0.7
SF3B3-212ENST00000568539 NEURL1BA8MQ27 555 aa10.7□□□□□ -0.7
SF3B3-212ENST00000568539 ATP5J2-PTCD1G3V325 749 aa10.7□□□□□ -0.7
SF3B3-212ENST00000568539 TRIM28Q13263 835 aaKnown RBP10.7□□□□□ -0.7
SF3B3-212ENST00000568539 CWF19L2Q2TBE0 894 aaKnown RBP10.7□□□□□ -0.7
SF3B3-212ENST00000568539 TBC1D9BQ66K14 1250 aa10.7□□□□□ -0.7
SF3B3-212ENST00000568539 ZNF784Q8NCA9 323 aaPredicted RBP10.7□□□□□ -0.7
SF3B3-212ENST00000568539 SRCIN1Q9C0H9 1055 aa10.7□□□□□ -0.7
SF3B3-212ENST00000568539 C4AP0C0L4 1744 aa10.7□□□□□ -0.7
SF3B3-212ENST00000568539 UBN2Q6ZU65 1347 aa10.69□□□□□ -0.7
SF3B3-212ENST00000568539 ALDH1L1O75891 902 aa10.69□□□□□ -0.7
SF3B3-212ENST00000568539 GPTP24298 496 aa10.69□□□□□ -0.7
SF3B3-212ENST00000568539 NLRP10Q86W26 655 aa10.69□□□□□ -0.7
SF3B3-212ENST00000568539 NLGN1Q8N2Q7 840 aa10.69□□□□□ -0.7
SF3B3-212ENST00000568539 SLC16A10Q8TF71 515 aa10.69□□□□□ -0.7
SF3B3-212ENST00000568539 BCORQ6W2J9 1755 aa10.68□□□□□ -0.7
SF3B3-212ENST00000568539 QSER1Q2KHR3 1735 aa10.68□□□□□ -0.7
SF3B3-212ENST00000568539 TM4SF1P30408 202 aa10.68□□□□□ -0.7
SF3B3-212ENST00000568539 GCKRQ14397 625 aa10.68□□□□□ -0.7
SF3B3-212ENST00000568539 MVPQ14764 893 aaKnown RBP10.68□□□□□ -0.7
SF3B3-212ENST00000568539 NFIXQ14938 502 aa10.68□□□□□ -0.7
SF3B3-212ENST00000568539 PARP10Q53GL7 1025 aa10.68□□□□□ -0.7
SF3B3-212ENST00000568539 ITPRIPQ8IWB1 547 aa10.68□□□□□ -0.7
SF3B3-212ENST00000568539 CCDC191Q8NCU4 936 aa10.68□□□□□ -0.7
SF3B3-212ENST00000568539 CWC25Q9NXE8 425 aaPredicted RBP10.68□□□□□ -0.7
SF3B3-212ENST00000568539 NIP7Q9Y221 180 aaKnown RBP eCLIP10.68□□□□□ -0.7
SF3B3-212ENST00000568539 COG6Q9Y2V7 657 aa10.68□□□□□ -0.7
SF3B3-212ENST00000568539 TUBGCP6Q96RT7 1819 aa10.68□□□□□ -0.7
SF3B3-212ENST00000568539 ARFGEF2Q9Y6D5 1785 aa10.67□□□□□ -0.7
SF3B3-212ENST00000568539 GSE1Q14687 1217 aa10.67□□□□□ -0.7
SF3B3-212ENST00000568539 SUSD4Q5VX71 490 aa10.67□□□□□ -0.7
SF3B3-212ENST00000568539 MSL1Q68DK7 614 aa10.67□□□□□ -0.7
SF3B3-212ENST00000568539 BICDL1Q6ZP65 573 aa10.67□□□□□ -0.7
SF3B3-212ENST00000568539 CRBNQ96SW2 442 aa10.67□□□□□ -0.7
SF3B3-212ENST00000568539 SETDB2Q96T68 719 aa10.67□□□□□ -0.7
SF3B3-212ENST00000568539 USP44Q9H0E7 712 aa10.67□□□□□ -0.7
SF3B3-212ENST00000568539 CARMIL3Q8ND23 1372 aa10.66□□□□□ -0.7
SF3B3-212ENST00000568539 UTYO14607 1347 aa10.66□□□□□ -0.7
SF3B3-212ENST00000568539 H7C1W4 665 aa10.66□□□□□ -0.7
SF3B3-212ENST00000568539 GRM8O00222 908 aa10.66□□□□□ -0.7
SF3B3-212ENST00000568539 ZBTB7BO15156 539 aaPredicted RBP10.66□□□□□ -0.7
SF3B3-212ENST00000568539 NTSR2O95665 410 aa10.66□□□□□ -0.7
SF3B3-212ENST00000568539 PRR29P0C7W0 189 aa10.66□□□□□ -0.7
SF3B3-212ENST00000568539 IRX6P78412 446 aaPredicted RBP10.66□□□□□ -0.7
SF3B3-212ENST00000568539 DDR1Q08345 913 aa10.66□□□□□ -0.7
SF3B3-212ENST00000568539 RNF25Q96BH1 459 aaPredicted RBP10.66□□□□□ -0.7
SF3B3-212ENST00000568539 MEIS3Q99687 375 aa10.66□□□□□ -0.7
SF3B3-212ENST00000568539 DDX19BQ9UMR2 479 aa10.66□□□□□ -0.7
SF3B3-212ENST00000568539 POLRMTO00411 1230 aaKnown RBP10.65□□□□□ -0.7
SF3B3-212ENST00000568539 PCCAP05165 728 aaPredicted RBP10.65□□□□□ -0.7
SF3B3-212ENST00000568539 MMP10P09238 476 aa10.65□□□□□ -0.7
SF3B3-212ENST00000568539 NBPF7P0C2Y1 421 aaPredicted RBP10.65□□□□□ -0.7
SF3B3-212ENST00000568539 CASP7P55210 303 aa10.65□□□□□ -0.7
SF3B3-212ENST00000568539 PPP1R42Q7Z4L9 355 aa10.65□□□□□ -0.7
SF3B3-212ENST00000568539 ZBTB38Q8NAP3 1195 aaPredicted RBP10.65□□□□□ -0.7
SF3B3-212ENST00000568539 UTP14AQ9BVJ6 771 aaKnown RBP10.65□□□□□ -0.7
SF3B3-212ENST00000568539 MTFR1LQ9H019 292 aa10.65□□□□□ -0.7
SF3B3-212ENST00000568539 C9orf78Q9NZ63 289 aaPredicted RBP10.65□□□□□ -0.7
SF3B3-212ENST00000568539 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.65□□□□□ -0.7
SF3B3-212ENST00000568539 PPP1R1BQ9UD71 204 aaPredicted RBP10.65□□□□□ -0.7
SF3B3-212ENST00000568539 CLEC11AQ9Y240 323 aa10.65□□□□□ -0.7
SF3B3-212ENST00000568539 GOLGB1Q14789 3259 aaKnown RBP10.65□□□□□ -0.7
SF3B3-212ENST00000568539 CASZ1Q86V15 1759 aa10.65□□□□□ -0.71
SF3B3-212ENST00000568539 FAM177BA6PVY3 158 aa10.64□□□□□ -0.71
SF3B3-212ENST00000568539 ZBTB7AO95365 584 aa10.64□□□□□ -0.71
SF3B3-212ENST00000568539 SERPINB2P05120 415 aa10.64□□□□□ -0.71
SF3B3-212ENST00000568539 GNAI3P08754 354 aa10.64□□□□□ -0.71
SF3B3-212ENST00000568539 C1QTNF8P60827 252 aa10.64□□□□□ -0.71
SF3B3-212ENST00000568539 UBE3BQ7Z3V4 1068 aa10.64□□□□□ -0.71
SF3B3-212ENST00000568539 NBPF5PQ86XG9 351 aaPredicted RBP10.64□□□□□ -0.71
SF3B3-212ENST00000568539 EXOC6Q8TAG9 804 aa10.64□□□□□ -0.71
SF3B3-212ENST00000568539 FAM89AQ96GI7 184 aa10.64□□□□□ -0.71
SF3B3-212ENST00000568539 NYXQ9GZU5 481 aa10.64□□□□□ -0.71
SF3B3-212ENST00000568539 ZBTB40Q9NUA8 1239 aa10.64□□□□□ -0.71
SF3B3-212ENST00000568539 TRMT112Q9UI30 125 aaKnown RBP10.64□□□□□ -0.71
SF3B3-212ENST00000568539 CACNA1FO60840 1977 aa10.64□□□□□ -0.71
SF3B3-212ENST00000568539 SH3TC1Q8TE82 1336 aa10.63□□□□□ -0.71
SF3B3-212ENST00000568539 CDHR2Q9BYE9 1310 aa10.63□□□□□ -0.71
SF3B3-212ENST00000568539 UBTFL1P0CB47 393 aaPredicted RBP10.63□□□□□ -0.71
SF3B3-212ENST00000568539 TPTE2Q6XPS3 522 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms