RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 OS9Q13438 667 aaPredicted RBP23.48■■□□□ 1.35
CLN3-233ENST00000568452 EPHA10Q5JZY3 1008 aa23.48■■□□□ 1.35
CLN3-233ENST00000568452 JARID2Q92833 1246 aaPredicted RBP23.48■■□□□ 1.35
CLN3-233ENST00000568452 NLRP10Q86W26 655 aa23.47■■□□□ 1.35
CLN3-233ENST00000568452 ZBTB38Q8NAP3 1195 aaPredicted RBP23.47■■□□□ 1.35
CLN3-233ENST00000568452 RHPN1Q8TCX5 695 aa23.47■■□□□ 1.35
CLN3-233ENST00000568452 RGL2O15211 777 aa23.46■■□□□ 1.35
CLN3-233ENST00000568452 CAMTA2O94983 1202 aa23.46■■□□□ 1.35
CLN3-233ENST00000568452 C16orf71Q8IYS4 520 aaPredicted RBP23.46■■□□□ 1.35
CLN3-233ENST00000568452 NUP98P52948 1817 aa23.46■■□□□ 1.35
CLN3-233ENST00000568452 FOXO4P98177 505 aa23.45■■□□□ 1.34
CLN3-233ENST00000568452 G3BP1Q13283 466 aaKnown RBP eCLIP23.45■■□□□ 1.34
CLN3-233ENST00000568452 ZNF34Q8IZ26 560 aa23.45■■□□□ 1.34
CLN3-233ENST00000568452 ZNF652Q9Y2D9 606 aa23.45■■□□□ 1.34
CLN3-233ENST00000568452 HMGB2P26583 209 aaKnown RBP23.44■■□□□ 1.34
CLN3-233ENST00000568452 CDHR2Q9BYE9 1310 aa23.44■■□□□ 1.34
CLN3-233ENST00000568452 RPS6KA4O75676 772 aa23.44■■□□□ 1.34
CLN3-233ENST00000568452 GPTP24298 496 aa23.44■■□□□ 1.34
CLN3-233ENST00000568452 LMBR1LQ6UX01 489 aa23.44■■□□□ 1.34
CLN3-233ENST00000568452 PLA2G12BQ9BX93 195 aa23.44■■□□□ 1.34
CLN3-233ENST00000568452 OSBPL3Q9H4L5 887 aa23.44■■□□□ 1.34
CLN3-233ENST00000568452 COPRSQ9NQ92 184 aa23.44■■□□□ 1.34
CLN3-233ENST00000568452 BCL11AQ9H165 835 aa23.43■■□□□ 1.34
CLN3-233ENST00000568452 PA2G4Q9UQ80 394 aaKnown RBP23.43■■□□□ 1.34
CLN3-233ENST00000568452 KCNQ4P56696 695 aa23.42■■□□□ 1.34
CLN3-233ENST00000568452 PARP10Q53GL7 1025 aa23.42■■□□□ 1.34
CLN3-233ENST00000568452 RTL5Q5HYW3 569 aaPredicted RBP23.42■■□□□ 1.34
CLN3-233ENST00000568452 TTC22Q5TAA0 569 aa23.42■■□□□ 1.34
CLN3-233ENST00000568452 CLEC4GQ6UXB4 293 aa23.42■■□□□ 1.34
CLN3-233ENST00000568452 OTUD7AQ8TE49 926 aaPredicted RBP23.41■■□□□ 1.34
CLN3-233ENST00000568452 SALL3Q9BXA9 1300 aa23.41■■□□□ 1.34
CLN3-233ENST00000568452 RFX5P48382 616 aaPredicted RBP23.41■■□□□ 1.34
CLN3-233ENST00000568452 PDE1AP54750 535 aa23.41■■□□□ 1.34
CLN3-233ENST00000568452 SLC27A3Q5K4L6 730 aa23.41■■□□□ 1.34
CLN3-233ENST00000568452 IL1RAPL2Q9NP60 686 aa23.41■■□□□ 1.34
CLN3-233ENST00000568452 TRMT112Q9UI30 125 aaKnown RBP23.41■■□□□ 1.34
CLN3-233ENST00000568452 AOX1Q06278 1338 aa23.4■■□□□ 1.34
CLN3-233ENST00000568452 TRIM37O94972 964 aa23.4■■□□□ 1.34
CLN3-233ENST00000568452 MX1P20591 662 aa23.4■■□□□ 1.34
CLN3-233ENST00000568452 CLASRPQ8N2M8 674 aaKnown RBP23.4■■□□□ 1.34
CLN3-233ENST00000568452 FAM89AQ96GI7 184 aa23.4■■□□□ 1.34
CLN3-233ENST00000568452 CHMP3Q9Y3E7 222 aa23.4■■□□□ 1.34
CLN3-233ENST00000568452 RTCBQ9Y3I0 505 aaKnown RBP23.4■■□□□ 1.34
CLN3-233ENST00000568452 TAF1LQ8IZX4 1826 aa23.4■■□□□ 1.34
CLN3-233ENST00000568452 BCORQ6W2J9 1755 aa23.39■■□□□ 1.34
CLN3-233ENST00000568452 STAP2Q9UGK3 403 aa23.39■■□□□ 1.33
CLN3-233ENST00000568452 UBN2Q6ZU65 1347 aa23.38■■□□□ 1.33
CLN3-233ENST00000568452 GNPATO15228 680 aa23.38■■□□□ 1.33
CLN3-233ENST00000568452 PTPN12Q05209 780 aaKnown RBP23.38■■□□□ 1.33
CLN3-233ENST00000568452 HSP90B1P14625 803 aaKnown RBP23.37■■□□□ 1.33
CLN3-233ENST00000568452 AK7Q96M32 723 aa23.37■■□□□ 1.33
CLN3-233ENST00000568452 GSPT1P15170 499 aaKnown RBP23.37■■□□□ 1.33
CLN3-233ENST00000568452 UTP14AQ9BVJ6 771 aaKnown RBP23.37■■□□□ 1.33
CLN3-233ENST00000568452 C4BP0C0L5 1744 aa23.37■■□□□ 1.33
CLN3-233ENST00000568452 IRS4O14654 1257 aaPredicted RBP23.36■■□□□ 1.33
CLN3-233ENST00000568452 SIL1Q9H173 461 aa23.36■■□□□ 1.33
CLN3-233ENST00000568452 NARFQ9UHQ1 456 aa23.36■■□□□ 1.33
CLN3-233ENST00000568452 NIP7Q9Y221 180 aaKnown RBP eCLIP23.36■■□□□ 1.33
CLN3-233ENST00000568452 SASH1O94885 1247 aa23.35■■□□□ 1.33
CLN3-233ENST00000568452 CSF1RP07333 972 aa23.35■■□□□ 1.33
CLN3-233ENST00000568452 SH3TC1Q8TE82 1336 aa23.34■■□□□ 1.33
CLN3-233ENST00000568452 PDE8AO60658 829 aa23.34■■□□□ 1.33
CLN3-233ENST00000568452 EIF5BO60841 1220 aaKnown RBP23.34■■□□□ 1.33
CLN3-233ENST00000568452 CCDC57Q2TAC2 916 aa23.34■■□□□ 1.33
CLN3-233ENST00000568452 KLHDC4Q8TBB5 520 aa23.34■■□□□ 1.33
CLN3-233ENST00000568452 UPF2Q9HAU5 1272 aaKnown RBP23.34■■□□□ 1.33
CLN3-233ENST00000568452 SCN7AQ01118 1682 aa23.34■■□□□ 1.33
CLN3-233ENST00000568452 ZPR1O75312 459 aa23.33■■□□□ 1.33
CLN3-233ENST00000568452 SUSD4Q5VX71 490 aa23.33■■□□□ 1.33
CLN3-233ENST00000568452 GPATCH3Q96I76 525 aa23.33■■□□□ 1.33
CLN3-233ENST00000568452 LRRC4BQ9NT99 713 aa23.33■■□□□ 1.33
CLN3-233ENST00000568452 FBXO3Q9UK99 471 aa23.33■■□□□ 1.33
CLN3-233ENST00000568452 USP42Q9H9J4 1324 aaKnown RBP23.33■■□□□ 1.33
CLN3-233ENST00000568452 CDC45O75419 566 aa23.33■■□□□ 1.32
CLN3-233ENST00000568452 IFIT2P09913 472 aaKnown RBP23.33■■□□□ 1.32
CLN3-233ENST00000568452 ADRA2BP18089 450 aa23.33■■□□□ 1.32
CLN3-233ENST00000568452 ANP32AP39687 249 aaKnown RBP23.33■■□□□ 1.32
CLN3-233ENST00000568452 CTSWP56202 376 aa23.33■■□□□ 1.32
CLN3-233ENST00000568452 NUTM1Q86Y26 1132 aa23.33■■□□□ 1.32
CLN3-233ENST00000568452 TTC41PQ6P2S7 1318 aa23.32■■□□□ 1.32
CLN3-233ENST00000568452 CIAO1O76071 339 aa23.31■■□□□ 1.32
CLN3-233ENST00000568452 SF3B2Q13435 895 aaKnown RBP23.31■■□□□ 1.32
CLN3-233ENST00000568452 TRAPPC3LQ5T215 181 aa23.31■■□□□ 1.32
CLN3-233ENST00000568452 PLSCR1O15162 318 aa23.3■■□□□ 1.32
CLN3-233ENST00000568452 SDSP20132 328 aa23.3■■□□□ 1.32
CLN3-233ENST00000568452 IL15P40933 162 aaPredicted RBP23.3■■□□□ 1.32
CLN3-233ENST00000568452 IFIT5Q13325 482 aaKnown RBP23.3■■□□□ 1.32
CLN3-233ENST00000568452 AACSQ86V21 672 aa23.3■■□□□ 1.32
CLN3-233ENST00000568452 SYNE4Q8N205 404 aa23.3■■□□□ 1.32
CLN3-233ENST00000568452 TTLL11Q8NHH1 800 aa23.3■■□□□ 1.32
CLN3-233ENST00000568452 ARHGEF1Q92888 912 aaKnown RBP23.3■■□□□ 1.32
CLN3-233ENST00000568452 EYA2O00167 538 aa23.3■■□□□ 1.32
CLN3-233ENST00000568452 ERC2O15083 957 aa23.3■■□□□ 1.32
CLN3-233ENST00000568452 NTSR2O95665 410 aa23.3■■□□□ 1.32
CLN3-233ENST00000568452 USPL1Q5W0Q7 1092 aa23.3■■□□□ 1.32
CLN3-233ENST00000568452 RFC4P35249 363 aa23.29■■□□□ 1.32
CLN3-233ENST00000568452 TXNRD1Q16881 649 aa23.29■■□□□ 1.32
CLN3-233ENST00000568452 TAF7LQ5H9L4 462 aa23.29■■□□□ 1.32
CLN3-233ENST00000568452 CASC1Q6TDU7 716 aa23.29■■□□□ 1.32
CLN3-233ENST00000568452 MYH3P11055 1940 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms