RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 SOX10P56693 466 aa15.98■□□□□ 0.15
CLK3-222ENST00000568232 TEFQ10587 303 aa15.98■□□□□ 0.15
CLK3-222ENST00000568232 CIAPIN1Q6FI81 312 aa15.98■□□□□ 0.15
CLK3-222ENST00000568232 TPTE2Q6XPS3 522 aa15.98■□□□□ 0.15
CLK3-222ENST00000568232 USP50Q70EL3 339 aaPredicted RBP15.98■□□□□ 0.15
CLK3-222ENST00000568232 SLC51AQ86UW1 340 aa15.98■□□□□ 0.15
CLK3-222ENST00000568232 SNED1Q8TER0 1413 aa15.98■□□□□ 0.15
CLK3-222ENST00000568232 FMNL2Q96PY5 1086 aa15.98■□□□□ 0.15
CLK3-222ENST00000568232 PSMD1Q99460 953 aa15.98■□□□□ 0.15
CLK3-222ENST00000568232 USP16Q9Y5T5 823 aa15.98■□□□□ 0.15
CLK3-222ENST00000568232 CASP8AP2Q9UKL3 1982 aa15.97■□□□□ 0.15
CLK3-222ENST00000568232 PRAMEF22A3QJZ6 481 aa15.97■□□□□ 0.15
CLK3-222ENST00000568232 CELF2O95319 508 aaKnown RBP15.97■□□□□ 0.15
CLK3-222ENST00000568232 ALDH1B1P30837 517 aa15.97■□□□□ 0.15
CLK3-222ENST00000568232 BRPF1P55201 1214 aaPredicted RBP15.97■□□□□ 0.15
CLK3-222ENST00000568232 CLEC4GQ6UXB4 293 aa15.97■□□□□ 0.15
CLK3-222ENST00000568232 ZIC5Q96T25 663 aa15.97■□□□□ 0.15
CLK3-222ENST00000568232 NIP7Q9Y221 180 aaKnown RBP eCLIP15.97■□□□□ 0.15
CLK3-222ENST00000568232 BCORQ6W2J9 1755 aa15.96■□□□□ 0.15
CLK3-222ENST00000568232 ZBTB12Q9Y330 459 aaPredicted RBP15.96■□□□□ 0.15
CLK3-222ENST00000568232 GLIS2Q9BZE0 524 aaPredicted RBP15.95■□□□□ 0.14
CLK3-222ENST00000568232 LARGE2Q8N3Y3 721 aa15.94■□□□□ 0.14
CLK3-222ENST00000568232 ZNF408Q9H9D4 720 aa15.94■□□□□ 0.14
CLK3-222ENST00000568232 ZNF652Q9Y2D9 606 aa15.94■□□□□ 0.14
CLK3-222ENST00000568232 TRPM7Q96QT4 1865 aa15.93■□□□□ 0.14
CLK3-222ENST00000568232 GNAT3A8MTJ3 354 aa15.93■□□□□ 0.14
CLK3-222ENST00000568232 TCERG1O14776 1098 aaKnown RBP15.92■□□□□ 0.14
CLK3-222ENST00000568232 GTF2E1P29083 439 aaPredicted RBP15.92■□□□□ 0.14
CLK3-222ENST00000568232 HLFQ16534 295 aa15.92■□□□□ 0.14
CLK3-222ENST00000568232 HHIPL1Q96JK4 782 aa15.92■□□□□ 0.14
CLK3-222ENST00000568232 ADARB2Q9NS39 739 aaKnown RBP15.92■□□□□ 0.14
CLK3-222ENST00000568232 GPRC5DQ9NZD1 345 aa15.92■□□□□ 0.14
CLK3-222ENST00000568232 BTBD11A6QL63 1104 aa15.91■□□□□ 0.14
CLK3-222ENST00000568232 DIAPH1O60610 1272 aaKnown RBP15.91■□□□□ 0.14
CLK3-222ENST00000568232 PRPF38BQ5VTL8 546 aaKnown RBP15.91■□□□□ 0.14
CLK3-222ENST00000568232 NUTM1Q86Y26 1132 aa15.91■□□□□ 0.14
CLK3-222ENST00000568232 KNSTRNQ9Y448 316 aa15.91■□□□□ 0.14
CLK3-222ENST00000568232 PDE4DIPQ5VU43 2346 aa15.9■□□□□ 0.14
CLK3-222ENST00000568232 NBPF26B4DH59 902 aa15.9■□□□□ 0.14
CLK3-222ENST00000568232 CRY2Q49AN0 593 aa15.9■□□□□ 0.14
CLK3-222ENST00000568232 CC2D2BQ6DHV5 1058 aa15.9■□□□□ 0.14
CLK3-222ENST00000568232 NBPF10Q6P3W6 841 aaKnown RBP15.9■□□□□ 0.14
CLK3-222ENST00000568232 DLK2Q6UY11 383 aa15.9■□□□□ 0.14
CLK3-222ENST00000568232 NBPF15Q8N660 670 aa15.9■□□□□ 0.14
CLK3-222ENST00000568232 ABCC12Q96J65 1359 aa15.89■□□□□ 0.13
CLK3-222ENST00000568232 NIM1KQ8IY84 436 aa15.89■□□□□ 0.13
CLK3-222ENST00000568232 SIPA1L3O60292 1781 aaPredicted RBP15.89■□□□□ 0.13
CLK3-222ENST00000568232 GMPSP49915 693 aaPredicted RBP15.88■□□□□ 0.13
CLK3-222ENST00000568232 HIRAP54198 1017 aaPredicted RBP15.88■□□□□ 0.13
CLK3-222ENST00000568232 CXCL9Q07325 125 aa15.88■□□□□ 0.13
CLK3-222ENST00000568232 NOGQ13253 232 aa15.88■□□□□ 0.13
CLK3-222ENST00000568232 AOC3Q16853 763 aa15.88■□□□□ 0.13
CLK3-222ENST00000568232 AMER1Q5JTC6 1135 aaPredicted RBP15.88■□□□□ 0.13
CLK3-222ENST00000568232 PGAP2Q9UHJ9 254 aa15.88■□□□□ 0.13
CLK3-222ENST00000568232 PPIP5K2O43314 1243 aa15.87■□□□□ 0.13
CLK3-222ENST00000568232 HUNKP57058 714 aa15.87■□□□□ 0.13
CLK3-222ENST00000568232 GAS2L2Q8NHY3 880 aa15.87■□□□□ 0.13
CLK3-222ENST00000568232 RPGRQ92834 1020 aaKnown RBP15.87■□□□□ 0.13
CLK3-222ENST00000568232 CEMIPQ8WUJ3 1361 aa15.87■□□□□ 0.13
CLK3-222ENST00000568232 NPC1L1Q9UHC9 1359 aa15.87■□□□□ 0.13
CLK3-222ENST00000568232 SNRPA1P09661 255 aaKnown RBP15.86■□□□□ 0.13
CLK3-222ENST00000568232 HSPA5P11021 654 aaKnown RBP15.86■□□□□ 0.13
CLK3-222ENST00000568232 SHTN1A0MZ66 631 aa15.85■□□□□ 0.13
CLK3-222ENST00000568232 PPEF1O14829 653 aaPredicted RBP15.85■□□□□ 0.13
CLK3-222ENST00000568232 U2SURPO15042 1029 aaKnown RBP15.85■□□□□ 0.13
CLK3-222ENST00000568232 HOXA10P31260 410 aaPredicted RBP15.85■□□□□ 0.13
CLK3-222ENST00000568232 CDC37L1Q7L3B6 337 aa15.85■□□□□ 0.13
CLK3-222ENST00000568232 USP48Q86UV5 1035 aa15.85■□□□□ 0.13
CLK3-222ENST00000568232 TRPM4Q8TD43 1214 aa15.85■□□□□ 0.13
CLK3-222ENST00000568232 FAM155AB1AL88 458 aaPredicted RBP15.84■□□□□ 0.13
CLK3-222ENST00000568232 RGL2O15211 777 aa15.84■□□□□ 0.13
CLK3-222ENST00000568232 TRPA1O75762 1119 aa15.84■□□□□ 0.13
CLK3-222ENST00000568232 GRIPAP1Q4V328 841 aa15.84■□□□□ 0.13
CLK3-222ENST00000568232 C3orf67Q6ZVT6 689 aa15.84■□□□□ 0.13
CLK3-222ENST00000568232 NGEFQ8N5V2 710 aa15.84■□□□□ 0.13
CLK3-222ENST00000568232 PHACTR3Q96KR7 559 aa15.84■□□□□ 0.13
CLK3-222ENST00000568232 RNF186Q9NXI6 227 aa15.84■□□□□ 0.13
CLK3-222ENST00000568232 ZNRF3Q9ULT6 936 aa15.84■□□□□ 0.13
CLK3-222ENST00000568232 KIF23Q02241 960 aaPredicted RBP15.83■□□□□ 0.12
CLK3-222ENST00000568232 ZC3H15Q8WU90 426 aaKnown RBP15.83■□□□□ 0.12
CLK3-222ENST00000568232 RBM17Q96I25 401 aaKnown RBP15.83■□□□□ 0.12
CLK3-222ENST00000568232 CRAMP1Q96RY5 1269 aa15.83■□□□□ 0.12
CLK3-222ENST00000568232 NYXQ9GZU5 481 aa15.83■□□□□ 0.12
CLK3-222ENST00000568232 RAD17O75943 681 aa15.82■□□□□ 0.12
CLK3-222ENST00000568232 EIF4G2P78344 907 aaKnown RBP eCLIP15.82■□□□□ 0.12
CLK3-222ENST00000568232 BCL2L13Q9BXK5 485 aa15.82■□□□□ 0.12
CLK3-222ENST00000568232 SAGE1Q9NXZ1 904 aa15.82■□□□□ 0.12
CLK3-222ENST00000568232 KIF7Q2M1P5 1343 aa15.82■□□□□ 0.12
CLK3-222ENST00000568232 GPTP24298 496 aa15.81■□□□□ 0.12
CLK3-222ENST00000568232 SUSD4Q5VX71 490 aa15.81■□□□□ 0.12
CLK3-222ENST00000568232 RGMBQ6NW40 437 aa15.81■□□□□ 0.12
CLK3-222ENST00000568232 RIC1Q4ADV7 1423 aa15.8■□□□□ 0.12
CLK3-222ENST00000568232 UBN2Q6ZU65 1347 aa15.8■□□□□ 0.12
CLK3-222ENST00000568232 CC2D1BQ5T0F9 858 aaKnown RBP15.8■□□□□ 0.12
CLK3-222ENST00000568232 MCM10Q7L590 875 aa15.8■□□□□ 0.12
CLK3-222ENST00000568232 CTU1Q7Z7A3 348 aaKnown RBP15.8■□□□□ 0.12
CLK3-222ENST00000568232 CNOT7Q9UIV1 285 aaKnown RBP15.8■□□□□ 0.12
CLK3-222ENST00000568232 ZNF157P51786 506 aaPredicted RBP15.79■□□□□ 0.12
CLK3-222ENST00000568232 TTLL7Q6ZT98 887 aa15.79■□□□□ 0.12
CLK3-222ENST00000568232 HPS5Q9UPZ3 1129 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms