RNA–Protein interactions for RNA: ENST00000565442.1

CHD9-215, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 2

Gene CHD9, Length 703 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-215ENST00000565442 USP21Q9UK80 565 aa8.79□□□□□ -1
CHD9-215ENST00000565442 SLC6A14Q9UN76 642 aa8.79□□□□□ -1
CHD9-215ENST00000565442 A6NJR5 290 aa8.78□□□□□ -1
CHD9-215ENST00000565442 SFI1A8K8P3 1242 aa8.78□□□□□ -1
CHD9-215ENST00000565442 NCOA4Q13772 614 aa8.78□□□□□ -1
CHD9-215ENST00000565442 NUDT8Q8WV74 236 aa8.78□□□□□ -1
CHD9-215ENST00000565442 HIRAP54198 1017 aaPredicted RBP8.77□□□□□ -1.01
CHD9-215ENST00000565442 PSMA6P60900 246 aaKnown RBP8.77□□□□□ -1.01
CHD9-215ENST00000565442 FMR1NBQ8N0W7 255 aaPredicted RBP8.77□□□□□ -1.01
CHD9-215ENST00000565442 COG6Q9Y2V7 657 aa8.77□□□□□ -1.01
CHD9-215ENST00000565442 ARID3CA6NKF2 412 aa8.76□□□□□ -1.01
CHD9-215ENST00000565442 AFF1P51825 1210 aaKnown RBP8.76□□□□□ -1.01
CHD9-215ENST00000565442 NFATC2IPQ8NCF5 419 aa8.76□□□□□ -1.01
CHD9-215ENST00000565442 ZNF280CQ8ND82 737 aa8.76□□□□□ -1.01
CHD9-215ENST00000565442 SUSD3Q96L08 255 aa8.76□□□□□ -1.01
CHD9-215ENST00000565442 PHACTR1Q9C0D0 580 aa8.76□□□□□ -1.01
CHD9-215ENST00000565442 IGFLR1Q9H665 355 aa8.76□□□□□ -1.01
CHD9-215ENST00000565442 CHMP3Q9Y3E7 222 aa8.76□□□□□ -1.01
CHD9-215ENST00000565442 PSAPL1Q6NUJ1 521 aa8.75□□□□□ -1.01
CHD9-215ENST00000565442 POTEAQ6S8J7 498 aa8.75□□□□□ -1.01
CHD9-215ENST00000565442 PROSER2Q86WR7 435 aaPredicted RBP8.75□□□□□ -1.01
CHD9-215ENST00000565442 TSPAN10Q9H1Z9 355 aaPredicted RBP8.75□□□□□ -1.01
CHD9-215ENST00000565442 RNF112Q9ULX5 631 aa8.75□□□□□ -1.01
CHD9-215ENST00000565442 HCN4Q9Y3Q4 1203 aa8.75□□□□□ -1.01
CHD9-215ENST00000565442 DMRTC2Q8IXT2 367 aaPredicted RBP8.74□□□□□ -1.01
CHD9-215ENST00000565442 NAGPAQ9UK23 515 aa8.74□□□□□ -1.01
CHD9-215ENST00000565442 USP17L5A8MUK1 530 aa8.73□□□□□ -1.01
CHD9-215ENST00000565442 MCTP1Q6DN14 999 aa8.73□□□□□ -1.01
CHD9-215ENST00000565442 ILDR2Q71H61 639 aa8.73□□□□□ -1.01
CHD9-215ENST00000565442 EFCC1Q9HA90 598 aa8.73□□□□□ -1.01
CHD9-215ENST00000565442 DNAJB12Q9NXW2 375 aaKnown RBP8.73□□□□□ -1.01
CHD9-215ENST00000565442 TRIM50Q86XT4 487 aa8.72□□□□□ -1.01
CHD9-215ENST00000565442 DEPDC4Q8N2C3 294 aa8.72□□□□□ -1.01
CHD9-215ENST00000565442 FNBP4Q8N3X1 1017 aaPredicted RBP8.72□□□□□ -1.01
CHD9-215ENST00000565442 TPCN2Q8NHX9 752 aa8.72□□□□□ -1.01
CHD9-215ENST00000565442 C1orf115Q9H7X2 142 aa8.72□□□□□ -1.01
CHD9-215ENST00000565442 RGS9O75916 674 aaPredicted RBP8.71□□□□□ -1.02
CHD9-215ENST00000565442 BTLAQ7Z6A9 289 aa8.71□□□□□ -1.02
CHD9-215ENST00000565442 WFDC12Q8WWY7 111 aa8.71□□□□□ -1.02
CHD9-215ENST00000565442 ALG2Q9H553 416 aa8.71□□□□□ -1.02
CHD9-215ENST00000565442 ZNF777Q9ULD5 760 aaPredicted RBP8.71□□□□□ -1.02
CHD9-215ENST00000565442 KRTAP4-8A0A0G2JLE6 195 aa8.7□□□□□ -1.02
CHD9-215ENST00000565442 KIAA1024Q9UPX6 916 aa8.7□□□□□ -1.02
CHD9-215ENST00000565442 IREB2P48200 963 aaKnown RBP8.69□□□□□ -1.02
CHD9-215ENST00000565442 MSL1Q68DK7 614 aa8.69□□□□□ -1.02
CHD9-215ENST00000565442 DTWD1Q8N5C7 304 aa8.69□□□□□ -1.02
CHD9-215ENST00000565442 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.69□□□□□ -1.02
CHD9-215ENST00000565442 ZBTB7BO15156 539 aaPredicted RBP8.68□□□□□ -1.02
CHD9-215ENST00000565442 NOS3P29474 1203 aa8.68□□□□□ -1.02
CHD9-215ENST00000565442 ATP1A2P50993 1020 aa8.68□□□□□ -1.02
CHD9-215ENST00000565442 CCDC102BQ68D86 513 aa8.68□□□□□ -1.02
CHD9-215ENST00000565442 FBXO11Q86XK2 927 aa8.68□□□□□ -1.02
CHD9-215ENST00000565442 PNMA5Q96PV4 448 aa8.68□□□□□ -1.02
CHD9-215ENST00000565442 ARID3AQ99856 593 aa8.68□□□□□ -1.02
CHD9-215ENST00000565442 GSX2Q9BZM3 304 aa8.68□□□□□ -1.02
CHD9-215ENST00000565442 M0R2N6 131 aa8.67□□□□□ -1.02
CHD9-215ENST00000565442 HIF1AQ16665 826 aa8.67□□□□□ -1.02
CHD9-215ENST00000565442 ALDH16A1Q8IZ83 802 aa8.67□□□□□ -1.02
CHD9-215ENST00000565442 PPP1R12BO60237 982 aaPredicted RBP8.66□□□□□ -1.02
CHD9-215ENST00000565442 NFKB1P19838 968 aa8.66□□□□□ -1.02
CHD9-215ENST00000565442 CLDN10P78369 228 aa8.66□□□□□ -1.02
CHD9-215ENST00000565442 FAM35AQ86V20 835 aa8.66□□□□□ -1.02
CHD9-215ENST00000565442 MEGF10Q96KG7 1140 aa8.66□□□□□ -1.02
CHD9-215ENST00000565442 PCMTD2Q9NV79 361 aa8.66□□□□□ -1.02
CHD9-215ENST00000565442 CCINQ13939 588 aa8.65□□□□□ -1.02
CHD9-215ENST00000565442 GRIK5Q16478 980 aa8.65□□□□□ -1.02
CHD9-215ENST00000565442 PRR23CQ6ZRP0 262 aa8.65□□□□□ -1.02
CHD9-215ENST00000565442 WWC1Q8IX03 1113 aa8.65□□□□□ -1.02
CHD9-215ENST00000565442 PAX4O43316 350 aa8.64□□□□□ -1.03
CHD9-215ENST00000565442 C21orf2O43822 256 aa8.64□□□□□ -1.03
CHD9-215ENST00000565442 CPB1P15086 417 aa8.64□□□□□ -1.03
CHD9-215ENST00000565442 PCSK7Q16549 785 aa8.64□□□□□ -1.03
CHD9-215ENST00000565442 IGF2-ASQ6U949 168 aa8.64□□□□□ -1.03
CHD9-215ENST00000565442 PLEKHM2Q8IWE5 1019 aa8.64□□□□□ -1.03
CHD9-215ENST00000565442 TSEN2Q8NCE0 465 aaKnown RBP8.64□□□□□ -1.03
CHD9-215ENST00000565442 FRRS1LQ9P0K9 344 aa8.64□□□□□ -1.03
CHD9-215ENST00000565442 COL17A1Q9UMD9 1497 aaPredicted RBP8.64□□□□□ -1.03
CHD9-215ENST00000565442 IER5Q5VY09 327 aa8.63□□□□□ -1.03
CHD9-215ENST00000565442 STAG2Q8N3U4 1231 aa8.63□□□□□ -1.03
CHD9-215ENST00000565442 LPIN3Q9BQK8 851 aa8.63□□□□□ -1.03
CHD9-215ENST00000565442 USP17L3A6NCW0 530 aa8.62□□□□□ -1.03
CHD9-215ENST00000565442 USP17L4A6NCW7 530 aa8.62□□□□□ -1.03
CHD9-215ENST00000565442 POM121CA8CG34 1229 aa8.62□□□□□ -1.03
CHD9-215ENST00000565442 USP17L2Q6R6M4 530 aa8.62□□□□□ -1.03
CHD9-215ENST00000565442 USP17L1Q7RTZ2 530 aa8.62□□□□□ -1.03
CHD9-215ENST00000565442 WFDC8Q8IUA0 241 aa8.62□□□□□ -1.03
CHD9-215ENST00000565442 LARGE2Q8N3Y3 721 aa8.62□□□□□ -1.03
CHD9-215ENST00000565442 CCDC82Q8N4S0 544 aa8.62□□□□□ -1.03
CHD9-215ENST00000565442 C2orf49Q9BVC5 232 aaPredicted RBP8.62□□□□□ -1.03
CHD9-215ENST00000565442 OGFOD1Q8N543 542 aa8.61□□□□□ -1.03
CHD9-215ENST00000565442 NGLY1Q96IV0 654 aa8.61□□□□□ -1.03
CHD9-215ENST00000565442 PALM3A6NDB9 673 aaPredicted RBP8.6□□□□□ -1.03
CHD9-215ENST00000565442 TGFBR3LH3BV60 316 aa8.6□□□□□ -1.03
CHD9-215ENST00000565442 FSTP19883 344 aa8.6□□□□□ -1.03
CHD9-215ENST00000565442 PLAURQ03405 335 aa8.6□□□□□ -1.03
CHD9-215ENST00000565442 PERM1Q5SV97 790 aa8.6□□□□□ -1.03
CHD9-215ENST00000565442 ELMSAN1Q6PJG2 1045 aa8.6□□□□□ -1.03
CHD9-215ENST00000565442 SLC51AQ86UW1 340 aa8.6□□□□□ -1.03
CHD9-215ENST00000565442 SIX5Q8N196 739 aa8.6□□□□□ -1.03
CHD9-215ENST00000565442 ATAD2Q6PL18 1390 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms