RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 LMBR1LQ6UX01 489 aa22.28■■□□□ 1.16
COMMD4-208ENST00000563220 KRT27Q7Z3Y8 459 aa22.28■■□□□ 1.16
COMMD4-208ENST00000563220 MYH14Q7Z406 1995 aaKnown RBP22.27■■□□□ 1.16
COMMD4-208ENST00000563220 PCCAP05165 728 aaPredicted RBP22.27■■□□□ 1.16
COMMD4-208ENST00000563220 OS9Q13438 667 aaPredicted RBP22.27■■□□□ 1.16
COMMD4-208ENST00000563220 RREB1Q92766 1687 aa22.27■■□□□ 1.16
COMMD4-208ENST00000563220 BTAF1O14981 1849 aa22.27■■□□□ 1.16
COMMD4-208ENST00000563220 CAMTA2O94983 1202 aa22.26■■□□□ 1.15
COMMD4-208ENST00000563220 RBM6P78332 1123 aaKnown RBP22.26■■□□□ 1.15
COMMD4-208ENST00000563220 FAM89AQ96GI7 184 aa22.26■■□□□ 1.15
COMMD4-208ENST00000563220 BCL11BQ9C0K0 894 aaPredicted RBP22.26■■□□□ 1.15
COMMD4-208ENST00000563220 ZNF831Q5JPB2 1677 aa22.26■■□□□ 1.15
COMMD4-208ENST00000563220 PTPN12Q05209 780 aaKnown RBP22.26■■□□□ 1.15
COMMD4-208ENST00000563220 ZNF34Q8IZ26 560 aa22.26■■□□□ 1.15
COMMD4-208ENST00000563220 ZBTB38Q8NAP3 1195 aaPredicted RBP22.26■■□□□ 1.15
COMMD4-208ENST00000563220 CCNL1Q9UK58 526 aaPredicted RBP22.26■■□□□ 1.15
COMMD4-208ENST00000563220 MX1P20591 662 aa22.25■■□□□ 1.15
COMMD4-208ENST00000563220 G3BP1Q13283 466 aaKnown RBP eCLIP22.25■■□□□ 1.152e-6■□□□□ 9.5
COMMD4-208ENST00000563220 TSHZ3Q63HK5 1081 aa22.25■■□□□ 1.15
COMMD4-208ENST00000563220 COPRSQ9NQ92 184 aa22.25■■□□□ 1.15
COMMD4-208ENST00000563220 CNTNAP4Q9C0A0 1308 aa22.25■■□□□ 1.15
COMMD4-208ENST00000563220 SASH1O94885 1247 aa22.24■■□□□ 1.15
COMMD4-208ENST00000563220 FAM196AQ6ZSG2 479 aa22.24■■□□□ 1.15
COMMD4-208ENST00000563220 NUTM1Q86Y26 1132 aa22.24■■□□□ 1.15
COMMD4-208ENST00000563220 ERC1Q8IUD2 1116 aa22.24■■□□□ 1.15
COMMD4-208ENST00000563220 SYNE4Q8N205 404 aa22.24■■□□□ 1.15
COMMD4-208ENST00000563220 SIL1Q9H173 461 aa22.24■■□□□ 1.15
COMMD4-208ENST00000563220 STAP2Q9UGK3 403 aa22.24■■□□□ 1.15
COMMD4-208ENST00000563220 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.24■■□□□ 1.15
COMMD4-208ENST00000563220 UBN2Q6ZU65 1347 aa22.23■■□□□ 1.15
COMMD4-208ENST00000563220 COL5A3P25940 1745 aaPredicted RBP22.23■■□□□ 1.15
COMMD4-208ENST00000563220 RC3H1Q5TC82 1133 aaKnown RBP22.23■■□□□ 1.15
COMMD4-208ENST00000563220 SMIM5Q71RC9 77 aa22.22■■□□□ 1.15
COMMD4-208ENST00000563220 CHMP3Q9Y3E7 222 aa22.22■■□□□ 1.15
COMMD4-208ENST00000563220 SBF2Q86WG5 1849 aa22.22■■□□□ 1.15
COMMD4-208ENST00000563220 SDSP20132 328 aa22.22■■□□□ 1.15
COMMD4-208ENST00000563220 PLA2G12BQ9BX93 195 aa22.22■■□□□ 1.15
COMMD4-208ENST00000563220 ANP32AP39687 249 aaKnown RBP22.2■■□□□ 1.14
COMMD4-208ENST00000563220 CLASRPQ8N2M8 674 aaKnown RBP22.2■■□□□ 1.14
COMMD4-208ENST00000563220 TRMT112Q9UI30 125 aaKnown RBP22.2■■□□□ 1.14
COMMD4-208ENST00000563220 RPS6KA4O75676 772 aa22.2■■□□□ 1.14
COMMD4-208ENST00000563220 TBC1D9Q6ZT07 1266 aa22.2■■□□□ 1.14
COMMD4-208ENST00000563220 CDHR2Q9BYE9 1310 aa22.2■■□□□ 1.14
COMMD4-208ENST00000563220 NUP98P52948 1817 aa22.19■■□□□ 1.14
COMMD4-208ENST00000563220 SUSD4Q5VX71 490 aa22.19■■□□□ 1.14
COMMD4-208ENST00000563220 TRIM37O94972 964 aa22.18■■□□□ 1.14
COMMD4-208ENST00000563220 CSF1RP07333 972 aa22.18■■□□□ 1.14
COMMD4-208ENST00000563220 BRWD3Q6RI45 1802 aa22.18■■□□□ 1.14
COMMD4-208ENST00000563220 EAF2Q96CJ1 260 aaPredicted RBP22.17■■□□□ 1.14
COMMD4-208ENST00000563220 LRRC4BQ9NT99 713 aa22.17■■□□□ 1.14
COMMD4-208ENST00000563220 AOX1Q06278 1338 aa22.17■■□□□ 1.14
COMMD4-208ENST00000563220 IRS4O14654 1257 aaPredicted RBP22.17■■□□□ 1.14
COMMD4-208ENST00000563220 GNPATO15228 680 aa22.17■■□□□ 1.14
COMMD4-208ENST00000563220 CDC45O75419 566 aa22.17■■□□□ 1.14
COMMD4-208ENST00000563220 AMIGO3Q86WK7 504 aa22.17■■□□□ 1.14
COMMD4-208ENST00000563220 MFAP1P55081 439 aaKnown RBP22.16■■□□□ 1.14
COMMD4-208ENST00000563220 AACSQ86V21 672 aa22.16■■□□□ 1.14
COMMD4-208ENST00000563220 PI4K2BQ8TCG2 481 aa22.16■■□□□ 1.14
COMMD4-208ENST00000563220 NIP7Q9Y221 180 aaKnown RBP eCLIP22.16■■□□□ 1.14
COMMD4-208ENST00000563220 RXRBP28702 533 aa22.15■■□□□ 1.14
COMMD4-208ENST00000563220 CLEC4GQ6UXB4 293 aa22.15■■□□□ 1.14
COMMD4-208ENST00000563220 ZNF594Q96JF6 807 aaPredicted RBP22.15■■□□□ 1.14
COMMD4-208ENST00000563220 CCDC85AQ96PX6 553 aaPredicted RBP22.15■■□□□ 1.14
COMMD4-208ENST00000563220 RGS17Q9UGC6 210 aaPredicted RBP22.15■■□□□ 1.14
COMMD4-208ENST00000563220 USP42Q9H9J4 1324 aaKnown RBP22.15■■□□□ 1.14
COMMD4-208ENST00000563220 PARP10Q53GL7 1025 aa22.15■■□□□ 1.14
COMMD4-208ENST00000563220 ANKRD36CQ5JPF3 1778 aa22.15■■□□□ 1.14
COMMD4-208ENST00000563220 LY75O60449 1722 aa22.14■■□□□ 1.14
COMMD4-208ENST00000563220 FAM177BA6PVY3 158 aa22.14■■□□□ 1.13
COMMD4-208ENST00000563220 IFIT2P09913 472 aaKnown RBP22.14■■□□□ 1.13
COMMD4-208ENST00000563220 TFCP2Q12800 502 aa22.14■■□□□ 1.13
COMMD4-208ENST00000563220 ATG9AQ7Z3C6 839 aa22.14■■□□□ 1.13
COMMD4-208ENST00000563220 TTLL11Q8NHH1 800 aa22.14■■□□□ 1.13
COMMD4-208ENST00000563220 FBXO41Q8TF61 875 aa22.14■■□□□ 1.13
COMMD4-208ENST00000563220 UTP14AQ9BVJ6 771 aaKnown RBP22.14■■□□□ 1.13
COMMD4-208ENST00000563220 CCDC8Q9H0W5 538 aaPredicted RBP22.14■■□□□ 1.13
COMMD4-208ENST00000563220 BCL2L12Q9HB09 334 aa22.14■■□□□ 1.13
COMMD4-208ENST00000563220 ZNF652Q9Y2D9 606 aa22.14■■□□□ 1.13
COMMD4-208ENST00000563220 RTCBQ9Y3I0 505 aaKnown RBP22.14■■□□□ 1.13
COMMD4-208ENST00000563220 UPF2Q9HAU5 1272 aaKnown RBP22.13■■□□□ 1.13
COMMD4-208ENST00000563220 CCDC57Q2TAC2 916 aa22.13■■□□□ 1.13
COMMD4-208ENST00000563220 TBC1D32Q96NH3 1257 aa22.13■■□□□ 1.13
COMMD4-208ENST00000563220 NARFQ9UHQ1 456 aa22.13■■□□□ 1.13
COMMD4-208ENST00000563220 EP400Q96L91 3159 aa22.12■■□□□ 1.13
COMMD4-208ENST00000563220 PDE8AO60658 829 aa22.12■■□□□ 1.13
COMMD4-208ENST00000563220 CTSWP56202 376 aa22.12■■□□□ 1.13
COMMD4-208ENST00000563220 LRRC24Q50LG9 513 aa22.12■■□□□ 1.13
COMMD4-208ENST00000563220 USPL1Q5W0Q7 1092 aa22.12■■□□□ 1.13
COMMD4-208ENST00000563220 PUS3Q9BZE2 481 aaKnown RBP22.12■■□□□ 1.13
COMMD4-208ENST00000563220 TLR7Q9NYK1 1049 aaKnown RBP22.12■■□□□ 1.13
COMMD4-208ENST00000563220 SRP68Q9UHB9 627 aaKnown RBP22.12■■□□□ 1.13
COMMD4-208ENST00000563220 TTC41PQ6P2S7 1318 aa22.12■■□□□ 1.13
COMMD4-208ENST00000563220 SH3TC1Q8TE82 1336 aa22.12■■□□□ 1.13
COMMD4-208ENST00000563220 EYA2O00167 538 aa22.11■■□□□ 1.13
COMMD4-208ENST00000563220 NTSR2O95665 410 aa22.11■■□□□ 1.13
COMMD4-208ENST00000563220 ARHGEF1Q92888 912 aaKnown RBP22.11■■□□□ 1.13
COMMD4-208ENST00000563220 IPO9Q96P70 1041 aaKnown RBP22.11■■□□□ 1.13
COMMD4-208ENST00000563220 HCLS1P14317 486 aaPredicted RBP22.11■■□□□ 1.13
COMMD4-208ENST00000563220 GREM2Q9H772 168 aa22.11■■□□□ 1.13
COMMD4-208ENST00000563220 ECHDC1Q9NTX5 307 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms