RNA–Protein interactions for RNA: ENST00000560897.1

HERC1-210, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 5

Gene HERC1, Length 539 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-210ENST00000560897 CCDC102AQ96A19 550 aa13.02□□□□□ -0.33
HERC1-210ENST00000560897 HDAC9Q9UKV0 1011 aa13.02□□□□□ -0.33
HERC1-210ENST00000560897 KLRG2A4D1S0 409 aaPredicted RBP13.01□□□□□ -0.33
HERC1-210ENST00000560897 RGMBQ6NW40 437 aa13.01□□□□□ -0.33
HERC1-210ENST00000560897 CLEC4GQ6UXB4 293 aa13.01□□□□□ -0.33
HERC1-210ENST00000560897 ZC3H15Q8WU90 426 aaKnown RBP13.01□□□□□ -0.33
HERC1-210ENST00000560897 TMX4Q9H1E5 349 aaPredicted RBP13.01□□□□□ -0.33
HERC1-210ENST00000560897 RNF186Q9NXI6 227 aa13.01□□□□□ -0.33
HERC1-210ENST00000560897 HEG1Q9ULI3 1381 aa13.01□□□□□ -0.33
HERC1-210ENST00000560897 FAM177BA6PVY3 158 aa13□□□□□ -0.33
HERC1-210ENST00000560897 PPIP5K2O43314 1243 aa13□□□□□ -0.33
HERC1-210ENST00000560897 KIF23Q02241 960 aaPredicted RBP13□□□□□ -0.33
HERC1-210ENST00000560897 BCL2L13Q9BXK5 485 aa13□□□□□ -0.33
HERC1-210ENST00000560897 COL4A5P29400 1685 aa12.99□□□□□ -0.33
HERC1-210ENST00000560897 A1BGP04217 495 aa12.99□□□□□ -0.33
HERC1-210ENST00000560897 ZNF157P51786 506 aaPredicted RBP12.99□□□□□ -0.33
HERC1-210ENST00000560897 C2orf69Q8N8R5 385 aa12.99□□□□□ -0.33
HERC1-210ENST00000560897 RPGRQ92834 1020 aaKnown RBP12.99□□□□□ -0.33
HERC1-210ENST00000560897 ZNF496Q96IT1 587 aaPredicted RBP12.99□□□□□ -0.33
HERC1-210ENST00000560897 NIP7Q9Y221 180 aaKnown RBP eCLIP12.99□□□□□ -0.33
HERC1-210ENST00000560897 CDHR2Q9BYE9 1310 aa12.98□□□□□ -0.33
HERC1-210ENST00000560897 TEFQ10587 303 aa12.98□□□□□ -0.33
HERC1-210ENST00000560897 ZNF790Q6PG37 636 aa12.98□□□□□ -0.33
HERC1-210ENST00000560897 FMNL2Q96PY5 1086 aa12.98□□□□□ -0.33
HERC1-210ENST00000560897 POLR3GLQ9BT43 218 aa12.98□□□□□ -0.33
HERC1-210ENST00000560897 GBA2Q9HCG7 927 aaPredicted RBP12.98□□□□□ -0.33
HERC1-210ENST00000560897 NPC1L1Q9UHC9 1359 aa12.97□□□□□ -0.33
HERC1-210ENST00000560897 GMPSP49915 693 aaPredicted RBP12.97□□□□□ -0.33
HERC1-210ENST00000560897 REM2Q8IYK8 340 aaPredicted RBP12.97□□□□□ -0.33
HERC1-210ENST00000560897 PGAP2Q9UHJ9 254 aa12.97□□□□□ -0.33
HERC1-210ENST00000560897 SNED1Q8TER0 1413 aa12.96□□□□□ -0.33
HERC1-210ENST00000560897 FAM155AB1AL88 458 aaPredicted RBP12.96□□□□□ -0.33
HERC1-210ENST00000560897 FXR1P51114 621 aaKnown RBP eCLIP12.96□□□□□ -0.33
HERC1-210ENST00000560897 USP48Q86UV5 1035 aa12.96□□□□□ -0.33
HERC1-210ENST00000560897 H7C1D1 291 aa12.95□□□□□ -0.34
HERC1-210ENST00000560897 AOC3Q16853 763 aa12.95□□□□□ -0.34
HERC1-210ENST00000560897 MORC1Q86VD1 984 aa12.95□□□□□ -0.34
HERC1-210ENST00000560897 NYXQ9GZU5 481 aa12.95□□□□□ -0.34
HERC1-210ENST00000560897 ZNRF3Q9ULT6 936 aa12.95□□□□□ -0.34
HERC1-210ENST00000560897 DLL1O00548 723 aa12.94□□□□□ -0.34
HERC1-210ENST00000560897 TCERG1O14776 1098 aaKnown RBP12.94□□□□□ -0.34
HERC1-210ENST00000560897 PPEF1O14829 653 aaPredicted RBP12.94□□□□□ -0.34
HERC1-210ENST00000560897 HMOX1P09601 288 aa12.94□□□□□ -0.34
HERC1-210ENST00000560897 IL13P35225 146 aa12.94□□□□□ -0.34
HERC1-210ENST00000560897 CXCL9Q07325 125 aa12.94□□□□□ -0.34
HERC1-210ENST00000560897 TNIP1Q15025 636 aa12.94□□□□□ -0.34
HERC1-210ENST00000560897 MTHFSDQ2M296 383 aaKnown RBP12.94□□□□□ -0.34
HERC1-210ENST00000560897 SUPT20HQ8NEM7 779 aa12.94□□□□□ -0.34
HERC1-210ENST00000560897 TRPM4Q8TD43 1214 aa12.94□□□□□ -0.34
HERC1-210ENST00000560897 RBM17Q96I25 401 aaKnown RBP12.94□□□□□ -0.34
HERC1-210ENST00000560897 VPS33BQ9H267 617 aa12.94□□□□□ -0.34
HERC1-210ENST00000560897 SLC10A3P09131 477 aa12.93□□□□□ -0.34
HERC1-210ENST00000560897 PIP4K2AP48426 406 aaPredicted RBP12.93□□□□□ -0.34
HERC1-210ENST00000560897 CRY2Q49AN0 593 aa12.93□□□□□ -0.34
HERC1-210ENST00000560897 FBXO46Q6PJ61 603 aaPredicted RBP12.93□□□□□ -0.34
HERC1-210ENST00000560897 KRT26Q7Z3Y9 468 aa12.93□□□□□ -0.34
HERC1-210ENST00000560897 CSRNP1Q96S65 589 aa12.93□□□□□ -0.34
HERC1-210ENST00000560897 RGL2O15211 777 aa12.92□□□□□ -0.34
HERC1-210ENST00000560897 HIRAP54198 1017 aaPredicted RBP12.92□□□□□ -0.34
HERC1-210ENST00000560897 CNOT7Q9UIV1 285 aaKnown RBP12.92□□□□□ -0.34
HERC1-210ENST00000560897 ZNF296Q8WUU4 475 aaPredicted RBP12.91□□□□□ -0.34
HERC1-210ENST00000560897 DCPSQ96C86 337 aaKnown RBP12.91□□□□□ -0.34
HERC1-210ENST00000560897 KIF7Q2M1P5 1343 aa12.9□□□□□ -0.34
HERC1-210ENST00000560897 RAD17O75943 681 aa12.9□□□□□ -0.34
HERC1-210ENST00000560897 NUTM1Q86Y26 1132 aa12.9□□□□□ -0.34
HERC1-210ENST00000560897 MICALL2Q8IY33 904 aa12.9□□□□□ -0.34
HERC1-210ENST00000560897 ABCC12Q96J65 1359 aa12.9□□□□□ -0.34
HERC1-210ENST00000560897 BTBD11A6QL63 1104 aa12.89□□□□□ -0.35
HERC1-210ENST00000560897 GNAT3A8MTJ3 354 aa12.89□□□□□ -0.35
HERC1-210ENST00000560897 HOXA10P31260 410 aaPredicted RBP12.89□□□□□ -0.35
HERC1-210ENST00000560897 CRAMP1Q96RY5 1269 aa12.89□□□□□ -0.35
HERC1-210ENST00000560897 POLR2AP24928 1970 aaKnown RBP12.89□□□□□ -0.35
HERC1-210ENST00000560897 RIC1Q4ADV7 1423 aa12.88□□□□□ -0.35
HERC1-210ENST00000560897 DLK2Q6UY11 383 aa12.88□□□□□ -0.35
HERC1-210ENST00000560897 DPP8Q6V1X1 898 aaPredicted RBP12.88□□□□□ -0.35
HERC1-210ENST00000560897 SULF1Q8IWU6 871 aa12.88□□□□□ -0.35
HERC1-210ENST00000560897 SLC17A8Q8NDX2 589 aa12.88□□□□□ -0.35
HERC1-210ENST00000560897 GAS2L2Q8NHY3 880 aa12.88□□□□□ -0.35
HERC1-210ENST00000560897 CNKSR2Q8WXI2 1034 aa12.88□□□□□ -0.35
HERC1-210ENST00000560897 USP16Q9Y5T5 823 aa12.88□□□□□ -0.35
HERC1-210ENST00000560897 SIPA1L3O60292 1781 aaPredicted RBP12.88□□□□□ -0.35
HERC1-210ENST00000560897 ADM5C9JUS6 153 aa12.87□□□□□ -0.35
HERC1-210ENST00000560897 TBC1D8O95759 1140 aa12.87□□□□□ -0.35
HERC1-210ENST00000560897 INTS3Q68E01 1043 aaKnown RBP12.87□□□□□ -0.35
HERC1-210ENST00000560897 RASAL3Q86YV0 1011 aa12.87□□□□□ -0.35
HERC1-210ENST00000560897 GPR25O00155 361 aa12.86□□□□□ -0.35
HERC1-210ENST00000560897 SNRPA1P09661 255 aaKnown RBP12.86□□□□□ -0.35
HERC1-210ENST00000560897 TBC1D10BQ4KMP7 808 aaPredicted RBP12.86□□□□□ -0.35
HERC1-210ENST00000560897 SAMD7Q7Z3H4 446 aa12.86□□□□□ -0.35
HERC1-210ENST00000560897 ATP6V0A2Q9Y487 856 aa12.86□□□□□ -0.35
HERC1-210ENST00000560897 SHTN1A0MZ66 631 aa12.85□□□□□ -0.35
HERC1-210ENST00000560897 KIAA2012Q0VF49 1180 aa12.85□□□□□ -0.35
HERC1-210ENST00000560897 HLFQ16534 295 aa12.85□□□□□ -0.35
HERC1-210ENST00000560897 RBM26Q5T8P6 1007 aaKnown RBP12.85□□□□□ -0.35
HERC1-210ENST00000560897 MPNDQ8N594 471 aa12.85□□□□□ -0.35
HERC1-210ENST00000560897 IL17REQ8NFR9 667 aa12.85□□□□□ -0.35
HERC1-210ENST00000560897 DPF2Q92785 391 aa12.85□□□□□ -0.35
HERC1-210ENST00000560897 RTFDC1Q9BY42 306 aaPredicted RBP12.85□□□□□ -0.35
HERC1-210ENST00000560897 PANK3Q9H999 370 aa12.85□□□□□ -0.35
HERC1-210ENST00000560897 COLQQ9Y215 455 aaPredicted RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms