RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 BECN1Q14457 450 aa21.99■■□□□ 1.11
SNX1-208ENST00000559844 USP44Q9H0E7 712 aa21.99■■□□□ 1.11
SNX1-208ENST00000559844 ZBTB3Q9H5J0 574 aa21.99■■□□□ 1.11
SNX1-208ENST00000559844 ANKRD13DQ6ZTN6 518 aa21.98■■□□□ 1.11
SNX1-208ENST00000559844 FLAD1Q8NFF5 587 aa21.98■■□□□ 1.11
SNX1-208ENST00000559844 MFAP1P55081 439 aaKnown RBP21.98■■□□□ 1.11
SNX1-208ENST00000559844 COL23A1Q86Y22 540 aaPredicted RBP21.98■■□□□ 1.11
SNX1-208ENST00000559844 MAP3K15Q6ZN16 1313 aa21.97■■□□□ 1.11
SNX1-208ENST00000559844 ADCY9O60503 1353 aa21.97■■□□□ 1.11
SNX1-208ENST00000559844 PI4KAP2A4QPH2 592 aa21.97■■□□□ 1.11
SNX1-208ENST00000559844 ZPR1O75312 459 aa21.97■■□□□ 1.11
SNX1-208ENST00000559844 PI4KAP1Q8N8J0 262 aa21.97■■□□□ 1.11
SNX1-208ENST00000559844 PLBD2Q8NHP8 589 aa21.97■■□□□ 1.11
SNX1-208ENST00000559844 SRP68Q9UHB9 627 aaKnown RBP21.97■■□□□ 1.11
SNX1-208ENST00000559844 NARFQ9UHQ1 456 aa21.97■■□□□ 1.11
SNX1-208ENST00000559844 BEND3Q5T5X7 828 aa21.96■■□□□ 1.11
SNX1-208ENST00000559844 KSR2Q6VAB6 950 aa21.96■■□□□ 1.11
SNX1-208ENST00000559844 RIC3Q7Z5B4 369 aa21.96■■□□□ 1.11
SNX1-208ENST00000559844 C22orf23Q9BZE7 217 aa21.96■■□□□ 1.11
SNX1-208ENST00000559844 LRRFIP2Q9Y608 721 aaKnown RBP21.96■■□□□ 1.11
SNX1-208ENST00000559844 USP42Q9H9J4 1324 aaKnown RBP21.96■■□□□ 1.11
SNX1-208ENST00000559844 CAMTA2O94983 1202 aa21.96■■□□□ 1.11
SNX1-208ENST00000559844 MAP3K2Q9Y2U5 619 aa21.96■■□□□ 1.11
SNX1-208ENST00000559844 TTC22Q5TAA0 569 aa21.95■■□□□ 1.1
SNX1-208ENST00000559844 USPL1Q5W0Q7 1092 aa21.95■■□□□ 1.1
SNX1-208ENST00000559844 ANKRD36CQ5JPF3 1778 aa21.95■■□□□ 1.1
SNX1-208ENST00000559844 R3HDM1Q15032 1099 aaKnown RBP21.94■■□□□ 1.1
SNX1-208ENST00000559844 ERVV-1B6SEH8 477 aa21.94■■□□□ 1.1
SNX1-208ENST00000559844 CDC45O75419 566 aa21.94■■□□□ 1.1
SNX1-208ENST00000559844 ALDH1L1O75891 902 aa21.94■■□□□ 1.1
SNX1-208ENST00000559844 HLFQ16534 295 aa21.94■■□□□ 1.1
SNX1-208ENST00000559844 HDAC5Q9UQL6 1122 aa21.93■■□□□ 1.1
SNX1-208ENST00000559844 AFDNP55196 1824 aaKnown RBP21.92■■□□□ 1.1
SNX1-208ENST00000559844 PDGFDQ9GZP0 370 aaPredicted RBP21.92■■□□□ 1.1
SNX1-208ENST00000559844 GIGYF2Q6Y7W6 1299 aaKnown RBP21.92■■□□□ 1.1
SNX1-208ENST00000559844 CASZ1Q86V15 1759 aa21.91■■□□□ 1.1
SNX1-208ENST00000559844 PNMA6EA0A0J9YXQ4 647 aa21.91■■□□□ 1.1
SNX1-208ENST00000559844 PSDA5PKW4 1024 aaPredicted RBP21.91■■□□□ 1.1
SNX1-208ENST00000559844 SMARCA5O60264 1052 aaPredicted RBP21.91■■□□□ 1.1
SNX1-208ENST00000559844 GSPT1P15170 499 aaKnown RBP21.91■■□□□ 1.1
SNX1-208ENST00000559844 SLC4A3P48751 1232 aa21.91■■□□□ 1.1
SNX1-208ENST00000559844 C16orf71Q8IYS4 520 aaPredicted RBP21.91■■□□□ 1.1
SNX1-208ENST00000559844 LRRCC1Q9C099 1032 aa21.91■■□□□ 1.1
SNX1-208ENST00000559844 BCL2L12Q9HB09 334 aa21.91■■□□□ 1.1
SNX1-208ENST00000559844 ZNF652Q9Y2D9 606 aa21.91■■□□□ 1.1
SNX1-208ENST00000559844 APBB1O00213 710 aa21.9■■□□□ 1.1
SNX1-208ENST00000559844 SSH3Q8TE77 659 aa21.9■■□□□ 1.1
SNX1-208ENST00000559844 IBTKQ9P2D0 1353 aaPredicted RBP21.9■■□□□ 1.1
SNX1-208ENST00000559844 GYS1P13807 737 aa21.9■■□□□ 1.1
SNX1-208ENST00000559844 TBC1D9Q6ZT07 1266 aa21.9■■□□□ 1.1
SNX1-208ENST00000559844 METTL22Q9BUU2 404 aaPredicted RBP21.9■■□□□ 1.1
SNX1-208ENST00000559844 OSBPL3Q9H4L5 887 aa21.9■■□□□ 1.1
SNX1-208ENST00000559844 RBM25P49756 843 aaKnown RBP21.89■■□□□ 1.09
SNX1-208ENST00000559844 CLEC4GQ6UXB4 293 aa21.89■■□□□ 1.09
SNX1-208ENST00000559844 MYD88Q99836 296 aa21.89■■□□□ 1.09
SNX1-208ENST00000559844 EXOC6BQ9Y2D4 811 aa21.89■■□□□ 1.09
SNX1-208ENST00000559844 NEXNQ0ZGT2 675 aa21.88■■□□□ 1.09
SNX1-208ENST00000559844 TCIRG1Q13488 830 aa21.88■■□□□ 1.09
SNX1-208ENST00000559844 POLA2Q14181 598 aa21.88■■□□□ 1.09
SNX1-208ENST00000559844 RGL2O15211 777 aa21.87■■□□□ 1.09
SNX1-208ENST00000559844 RAB11FIP3O75154 756 aa21.87■■□□□ 1.09
SNX1-208ENST00000559844 HSP90AB3PQ58FF7 597 aa21.87■■□□□ 1.09
SNX1-208ENST00000559844 ATP5J2-PTCD1G3V325 749 aa21.87■■□□□ 1.09
SNX1-208ENST00000559844 GPTP24298 496 aa21.87■■□□□ 1.09
SNX1-208ENST00000559844 BICDL1Q6ZP65 573 aa21.87■■□□□ 1.09
SNX1-208ENST00000559844 LINS1Q8NG48 757 aa21.87■■□□□ 1.09
SNX1-208ENST00000559844 OTUD7AQ8TE49 926 aaPredicted RBP21.87■■□□□ 1.09
SNX1-208ENST00000559844 NBPF7P0C2Y1 421 aaPredicted RBP21.86■■□□□ 1.09
SNX1-208ENST00000559844 TBC1D9BQ66K14 1250 aa21.86■■□□□ 1.09
SNX1-208ENST00000559844 MSL1Q68DK7 614 aa21.86■■□□□ 1.09
SNX1-208ENST00000559844 PPP1R42Q7Z4L9 355 aa21.86■■□□□ 1.09
SNX1-208ENST00000559844 NIP7Q9Y221 180 aaKnown RBP eCLIP21.86■■□□□ 1.09
SNX1-208ENST00000559844 CASC1Q6TDU7 716 aa21.85■■□□□ 1.09
SNX1-208ENST00000559844 PDE1AP54750 535 aa21.85■■□□□ 1.09
SNX1-208ENST00000559844 CWF19L2Q2TBE0 894 aaKnown RBP21.85■■□□□ 1.09
SNX1-208ENST00000559844 C9orf78Q9NZ63 289 aaPredicted RBP21.85■■□□□ 1.09
SNX1-208ENST00000559844 IGKV5-2P06315 115 aa21.84■■□□□ 1.09
SNX1-208ENST00000559844 HSP90AB4PQ58FF6 505 aa21.84■■□□□ 1.09
SNX1-208ENST00000559844 ZNF34Q8IZ26 560 aa21.84■■□□□ 1.09
SNX1-208ENST00000559844 NLGN1Q8N2Q7 840 aa21.84■■□□□ 1.09
SNX1-208ENST00000559844 BCL11AQ9H165 835 aa21.84■■□□□ 1.09
SNX1-208ENST00000559844 COL24A1Q17RW2 1714 aa21.83■■□□□ 1.09
SNX1-208ENST00000559844 MTX1Q13505 466 aa21.83■■□□□ 1.09
SNX1-208ENST00000559844 NBR1Q14596 966 aa21.83■■□□□ 1.09
SNX1-208ENST00000559844 SLC16A10Q8TF71 515 aa21.83■■□□□ 1.09
SNX1-208ENST00000559844 ISCA1Q9BUE6 129 aa21.83■■□□□ 1.09
SNX1-208ENST00000559844 UBN2Q6ZU65 1347 aa21.83■■□□□ 1.09
SNX1-208ENST00000559844 SALL3Q9BXA9 1300 aa21.83■■□□□ 1.09
SNX1-208ENST00000559844 SRGAP3O43295 1099 aa21.83■■□□□ 1.08
SNX1-208ENST00000559844 NFIXQ14938 502 aa21.83■■□□□ 1.08
SNX1-208ENST00000559844 SETDB2Q96T68 719 aa21.83■■□□□ 1.08
SNX1-208ENST00000559844 NEURL1BA8MQ27 555 aa21.82■■□□□ 1.08
SNX1-208ENST00000559844 SDSP20132 328 aa21.82■■□□□ 1.08
SNX1-208ENST00000559844 UTYO14607 1347 aa21.82■■□□□ 1.08
SNX1-208ENST00000559844 ZBTB7AO95365 584 aa21.81■■□□□ 1.08
SNX1-208ENST00000559844 RTL5Q5HYW3 569 aaPredicted RBP21.81■■□□□ 1.08
SNX1-208ENST00000559844 TBC1D2Q9BYX2 928 aa21.81■■□□□ 1.08
SNX1-208ENST00000559844 AOX1Q06278 1338 aa21.81■■□□□ 1.08
SNX1-208ENST00000559844 SURF6O75683 361 aaKnown RBP21.81■■□□□ 1.08
SNX1-208ENST00000559844 MX1P20591 662 aa21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms