RNA–Protein interactions for RNA: ENST00000559460.5

SMAD3-211, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-211ENST00000559460 PPIP5K2O43314 1243 aa13.18□□□□□ -0.3
SMAD3-211ENST00000559460 TEFQ10587 303 aa13.18□□□□□ -0.3
SMAD3-211ENST00000559460 C2orf69Q8N8R5 385 aa13.18□□□□□ -0.3
SMAD3-211ENST00000559460 ZC3H15Q8WU90 426 aaKnown RBP13.18□□□□□ -0.3
SMAD3-211ENST00000559460 RPGRQ92834 1020 aaKnown RBP13.18□□□□□ -0.3
SMAD3-211ENST00000559460 ZIC5Q96T25 663 aa13.18□□□□□ -0.3
SMAD3-211ENST00000559460 POLR3GLQ9BT43 218 aa13.18□□□□□ -0.3
SMAD3-211ENST00000559460 BCL2L13Q9BXK5 485 aa13.18□□□□□ -0.3
SMAD3-211ENST00000559460 RNF186Q9NXI6 227 aa13.18□□□□□ -0.3
SMAD3-211ENST00000559460 KLRG2A4D1S0 409 aaPredicted RBP13.17□□□□□ -0.3
SMAD3-211ENST00000559460 ZNF157P51786 506 aaPredicted RBP13.17□□□□□ -0.3
SMAD3-211ENST00000559460 KIF23Q02241 960 aaPredicted RBP13.17□□□□□ -0.3
SMAD3-211ENST00000559460 ZNF496Q96IT1 587 aaPredicted RBP13.17□□□□□ -0.3
SMAD3-211ENST00000559460 FMNL2Q96PY5 1086 aa13.17□□□□□ -0.3
SMAD3-211ENST00000559460 NIP7Q9Y221 180 aaKnown RBP eCLIP13.17□□□□□ -0.3
SMAD3-211ENST00000559460 CDHR2Q9BYE9 1310 aa13.16□□□□□ -0.3
SMAD3-211ENST00000559460 A1BGP04217 495 aa13.16□□□□□ -0.3
SMAD3-211ENST00000559460 UBR2Q8IWV8 1755 aa13.16□□□□□ -0.3
SMAD3-211ENST00000559460 ZNF790Q6PG37 636 aa13.15□□□□□ -0.3
SMAD3-211ENST00000559460 GBA2Q9HCG7 927 aaPredicted RBP13.15□□□□□ -0.3
SMAD3-211ENST00000559460 GMPSP49915 693 aaPredicted RBP13.14□□□□□ -0.31
SMAD3-211ENST00000559460 MORC1Q86VD1 984 aa13.14□□□□□ -0.31
SMAD3-211ENST00000559460 REM2Q8IYK8 340 aaPredicted RBP13.14□□□□□ -0.31
SMAD3-211ENST00000559460 NPC1L1Q9UHC9 1359 aa13.14□□□□□ -0.31
SMAD3-211ENST00000559460 COL4A5P29400 1685 aa13.14□□□□□ -0.31
SMAD3-211ENST00000559460 H7C1D1 291 aa13.13□□□□□ -0.31
SMAD3-211ENST00000559460 TCERG1O14776 1098 aaKnown RBP13.13□□□□□ -0.31
SMAD3-211ENST00000559460 PPEF1O14829 653 aaPredicted RBP13.13□□□□□ -0.31
SMAD3-211ENST00000559460 TNIP1Q15025 636 aa13.13□□□□□ -0.31
SMAD3-211ENST00000559460 AOC3Q16853 763 aa13.13□□□□□ -0.31
SMAD3-211ENST00000559460 USP48Q86UV5 1035 aa13.13□□□□□ -0.31
SMAD3-211ENST00000559460 SUPT20HQ8NEM7 779 aa13.13□□□□□ -0.31
SMAD3-211ENST00000559460 NYXQ9GZU5 481 aa13.13□□□□□ -0.31
SMAD3-211ENST00000559460 PGAP2Q9UHJ9 254 aa13.13□□□□□ -0.31
SMAD3-211ENST00000559460 ZNRF3Q9ULT6 936 aa13.13□□□□□ -0.31
SMAD3-211ENST00000559460 FAM155AB1AL88 458 aaPredicted RBP13.12□□□□□ -0.31
SMAD3-211ENST00000559460 HMOX1P09601 288 aa13.12□□□□□ -0.31
SMAD3-211ENST00000559460 RBM17Q96I25 401 aaKnown RBP13.12□□□□□ -0.31
SMAD3-211ENST00000559460 VPS33BQ9H267 617 aa13.12□□□□□ -0.31
SMAD3-211ENST00000559460 SNED1Q8TER0 1413 aa13.12□□□□□ -0.31
SMAD3-211ENST00000559460 DLL1O00548 723 aa13.11□□□□□ -0.31
SMAD3-211ENST00000559460 IL13P35225 146 aa13.11□□□□□ -0.31
SMAD3-211ENST00000559460 FXR1P51114 621 aaKnown RBP eCLIP13.11□□□□□ -0.31
SMAD3-211ENST00000559460 CXCL9Q07325 125 aa13.11□□□□□ -0.31
SMAD3-211ENST00000559460 MTHFSDQ2M296 383 aaKnown RBP13.11□□□□□ -0.31
SMAD3-211ENST00000559460 KRT26Q7Z3Y9 468 aa13.11□□□□□ -0.31
SMAD3-211ENST00000559460 AKAP11Q9UKA4 1901 aa13.1□□□□□ -0.31
SMAD3-211ENST00000559460 SLC10A3P09131 477 aa13.1□□□□□ -0.31
SMAD3-211ENST00000559460 PIP4K2AP48426 406 aaPredicted RBP13.1□□□□□ -0.31
SMAD3-211ENST00000559460 FBXO46Q6PJ61 603 aaPredicted RBP13.1□□□□□ -0.31
SMAD3-211ENST00000559460 TRPM4Q8TD43 1214 aa13.1□□□□□ -0.31
SMAD3-211ENST00000559460 DCPSQ96C86 337 aaKnown RBP13.1□□□□□ -0.31
SMAD3-211ENST00000559460 CNOT7Q9UIV1 285 aaKnown RBP13.1□□□□□ -0.31
SMAD3-211ENST00000559460 RGL2O15211 777 aa13.09□□□□□ -0.31
SMAD3-211ENST00000559460 CRY2Q49AN0 593 aa13.09□□□□□ -0.31
SMAD3-211ENST00000559460 CSRNP1Q96S65 589 aa13.09□□□□□ -0.31
SMAD3-211ENST00000559460 RAD17O75943 681 aa13.08□□□□□ -0.32
SMAD3-211ENST00000559460 HIRAP54198 1017 aaPredicted RBP13.08□□□□□ -0.32
SMAD3-211ENST00000559460 MICALL2Q8IY33 904 aa13.08□□□□□ -0.32
SMAD3-211ENST00000559460 ZNF296Q8WUU4 475 aaPredicted RBP13.08□□□□□ -0.32
SMAD3-211ENST00000559460 BTBD11A6QL63 1104 aa13.07□□□□□ -0.32
SMAD3-211ENST00000559460 GNAT3A8MTJ3 354 aa13.07□□□□□ -0.32
SMAD3-211ENST00000559460 NUTM1Q86Y26 1132 aa13.07□□□□□ -0.32
SMAD3-211ENST00000559460 CRAMP1Q96RY5 1269 aa13.07□□□□□ -0.32
SMAD3-211ENST00000559460 KIF7Q2M1P5 1343 aa13.07□□□□□ -0.32
SMAD3-211ENST00000559460 ABCC12Q96J65 1359 aa13.07□□□□□ -0.32
SMAD3-211ENST00000559460 HOXA10P31260 410 aaPredicted RBP13.06□□□□□ -0.32
SMAD3-211ENST00000559460 DPP8Q6V1X1 898 aaPredicted RBP13.06□□□□□ -0.32
SMAD3-211ENST00000559460 SULF1Q8IWU6 871 aa13.06□□□□□ -0.32
SMAD3-211ENST00000559460 SLC17A8Q8NDX2 589 aa13.06□□□□□ -0.32
SMAD3-211ENST00000559460 USP16Q9Y5T5 823 aa13.06□□□□□ -0.32
SMAD3-211ENST00000559460 ADM5C9JUS6 153 aa13.05□□□□□ -0.32
SMAD3-211ENST00000559460 TBC1D8O95759 1140 aa13.05□□□□□ -0.32
SMAD3-211ENST00000559460 INTS3Q68E01 1043 aaKnown RBP13.05□□□□□ -0.32
SMAD3-211ENST00000559460 GAS2L2Q8NHY3 880 aa13.05□□□□□ -0.32
SMAD3-211ENST00000559460 RIC1Q4ADV7 1423 aa13.05□□□□□ -0.32
SMAD3-211ENST00000559460 SNRPA1P09661 255 aaKnown RBP13.04□□□□□ -0.32
SMAD3-211ENST00000559460 TBC1D10BQ4KMP7 808 aaPredicted RBP13.04□□□□□ -0.32
SMAD3-211ENST00000559460 DLK2Q6UY11 383 aa13.04□□□□□ -0.32
SMAD3-211ENST00000559460 RASAL3Q86YV0 1011 aa13.04□□□□□ -0.32
SMAD3-211ENST00000559460 GPR25O00155 361 aa13.03□□□□□ -0.32
SMAD3-211ENST00000559460 KIAA2012Q0VF49 1180 aa13.03□□□□□ -0.32
SMAD3-211ENST00000559460 RBM26Q5T8P6 1007 aaKnown RBP13.03□□□□□ -0.32
SMAD3-211ENST00000559460 SAMD7Q7Z3H4 446 aa13.03□□□□□ -0.32
SMAD3-211ENST00000559460 MPNDQ8N594 471 aa13.03□□□□□ -0.32
SMAD3-211ENST00000559460 ATP6V0A2Q9Y487 856 aa13.03□□□□□ -0.32
SMAD3-211ENST00000559460 PRAMEF22A3QJZ6 481 aa13.02□□□□□ -0.33
SMAD3-211ENST00000559460 FKTNO75072 461 aa13.02□□□□□ -0.33
SMAD3-211ENST00000559460 HLFQ16534 295 aa13.02□□□□□ -0.33
SMAD3-211ENST00000559460 IL17REQ8NFR9 667 aa13.02□□□□□ -0.33
SMAD3-211ENST00000559460 DPF2Q92785 391 aa13.02□□□□□ -0.33
SMAD3-211ENST00000559460 NLRP3Q96P20 1036 aa13.02□□□□□ -0.33
SMAD3-211ENST00000559460 PANK3Q9H999 370 aa13.02□□□□□ -0.33
SMAD3-211ENST00000559460 COLQQ9Y215 455 aaPredicted RBP13.02□□□□□ -0.33
SMAD3-211ENST00000559460 SHTN1A0MZ66 631 aa13.01□□□□□ -0.33
SMAD3-211ENST00000559460 DIAPH1O60610 1272 aaKnown RBP13.01□□□□□ -0.33
SMAD3-211ENST00000559460 NOM1Q5C9Z4 860 aaKnown RBP13.01□□□□□ -0.33
SMAD3-211ENST00000559460 KIF6Q6ZMV9 814 aa13.01□□□□□ -0.33
SMAD3-211ENST00000559460 RTFDC1Q9BY42 306 aaPredicted RBP13.01□□□□□ -0.33
SMAD3-211ENST00000559460 ZBTB12Q9Y330 459 aaPredicted RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms