RNA–Protein interactions for RNA: ENST00000558771.1

LRRC28-208, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-208ENST00000558771 CCNL1Q9UK58 526 aaPredicted RBP7.78□□□□□ -1.16
LRRC28-208ENST00000558771 SBNO2Q9Y2G9 1366 aa7.78□□□□□ -1.16
LRRC28-208ENST00000558771 CD163L1Q9NR16 1453 aa7.77□□□□□ -1.17
LRRC28-208ENST00000558771 HOXA2O43364 376 aa7.77□□□□□ -1.17
LRRC28-208ENST00000558771 SPIRE2Q8WWL2 714 aa7.77□□□□□ -1.17
LRRC28-208ENST00000558771 HLA-CQ95604 372 aa7.77□□□□□ -1.17
LRRC28-208ENST00000558771 LTV1Q96GA3 475 aaPredicted RBP7.77□□□□□ -1.17
LRRC28-208ENST00000558771 SLC6A16Q9GZN6 736 aa7.77□□□□□ -1.17
LRRC28-208ENST00000558771 CD2APQ9Y5K6 639 aa7.77□□□□□ -1.17
LRRC28-208ENST00000558771 FAM208AQ9UK61 1670 aaKnown RBP7.76□□□□□ -1.17
LRRC28-208ENST00000558771 RNF223E7ERA6 249 aa7.76□□□□□ -1.17
LRRC28-208ENST00000558771 S1PR4O95977 384 aa7.76□□□□□ -1.17
LRRC28-208ENST00000558771 Q3C1V9 767 aa7.76□□□□□ -1.17
LRRC28-208ENST00000558771 IP6K1Q92551 441 aa7.76□□□□□ -1.17
LRRC28-208ENST00000558771 L3MBTL2Q969R5 705 aa7.76□□□□□ -1.17
LRRC28-208ENST00000558771 ROCK2O75116 1388 aaKnown RBP7.75□□□□□ -1.17
LRRC28-208ENST00000558771 USP47Q96K76 1375 aa7.75□□□□□ -1.17
LRRC28-208ENST00000558771 PPEF1O14829 653 aaPredicted RBP7.75□□□□□ -1.17
LRRC28-208ENST00000558771 GUCA2AQ02747 115 aa7.75□□□□□ -1.17
LRRC28-208ENST00000558771 RNF19BQ6ZMZ0 732 aa7.75□□□□□ -1.17
LRRC28-208ENST00000558771 FAM160A2Q8N612 972 aaPredicted RBP7.75□□□□□ -1.17
LRRC28-208ENST00000558771 ZCRB1Q8TBF4 217 aaKnown RBP7.75□□□□□ -1.17
LRRC28-208ENST00000558771 WWC3Q9ULE0 1092 aa7.75□□□□□ -1.17
LRRC28-208ENST00000558771 EDC4Q6P2E9 1401 aaKnown RBP7.75□□□□□ -1.17
LRRC28-208ENST00000558771 RGPD2P0DJD1 1756 aa7.74□□□□□ -1.17
LRRC28-208ENST00000558771 MEGF6O75095 1541 aa7.74□□□□□ -1.17
LRRC28-208ENST00000558771 C5P01031 1676 aa7.74□□□□□ -1.17
LRRC28-208ENST00000558771 HDGFL2Q7Z4V5 671 aaPredicted RBP7.74□□□□□ -1.17
LRRC28-208ENST00000558771 TMC1Q8TDI8 760 aa7.74□□□□□ -1.17
LRRC28-208ENST00000558771 SLC12A5Q9H2X9 1139 aa7.74□□□□□ -1.17
LRRC28-208ENST00000558771 IGSF1Q8N6C5 1336 aa7.74□□□□□ -1.17
LRRC28-208ENST00000558771 NDUFV2P19404 249 aa7.73□□□□□ -1.17
LRRC28-208ENST00000558771 HOXC9P31274 260 aa7.73□□□□□ -1.17
LRRC28-208ENST00000558771 ANKLE1Q8NAG6 615 aa7.73□□□□□ -1.17
LRRC28-208ENST00000558771 FLAD1Q8NFF5 587 aa7.73□□□□□ -1.17
LRRC28-208ENST00000558771 TBC1D2Q9BYX2 928 aa7.73□□□□□ -1.17
LRRC28-208ENST00000558771 PRKD2Q9BZL6 878 aa7.73□□□□□ -1.17
LRRC28-208ENST00000558771 MAP3K19Q56UN5 1328 aa7.73□□□□□ -1.17
LRRC28-208ENST00000558771 TAF1LQ8IZX4 1826 aa7.73□□□□□ -1.17
LRRC28-208ENST00000558771 A0A1W2PP64 1363 aa7.72□□□□□ -1.17
LRRC28-208ENST00000558771 MOXD2PA6NHM9 499 aa7.72□□□□□ -1.17
LRRC28-208ENST00000558771 FDX1P10109 184 aa7.72□□□□□ -1.17
LRRC28-208ENST00000558771 FBLN1P23142 703 aa7.72□□□□□ -1.17
LRRC28-208ENST00000558771 DIXDC1Q155Q3 683 aa7.72□□□□□ -1.17
LRRC28-208ENST00000558771 AMIGO3Q86WK7 504 aa7.72□□□□□ -1.17
LRRC28-208ENST00000558771 DNAJC5GQ8N7S2 189 aa7.72□□□□□ -1.17
LRRC28-208ENST00000558771 TOGARAM1Q9Y4F4 1720 aa7.72□□□□□ -1.17
LRRC28-208ENST00000558771 PALLDQ8WX93 1383 aa7.71□□□□□ -1.17
LRRC28-208ENST00000558771 AMPHP49418 695 aa7.71□□□□□ -1.18
LRRC28-208ENST00000558771 TPRNQ4KMQ1 711 aa7.71□□□□□ -1.18
LRRC28-208ENST00000558771 MSS51Q4VC12 460 aa7.71□□□□□ -1.18
LRRC28-208ENST00000558771 NBPF6Q5VWK0 638 aa7.71□□□□□ -1.18
LRRC28-208ENST00000558771 SMIM5Q71RC9 77 aa7.71□□□□□ -1.18
LRRC28-208ENST00000558771 USHBP1Q8N6Y0 703 aa7.71□□□□□ -1.18
LRRC28-208ENST00000558771 SYMPKQ92797 1274 aaKnown RBP7.71□□□□□ -1.18
LRRC28-208ENST00000558771 NBPF4Q96M43 638 aa7.71□□□□□ -1.18
LRRC28-208ENST00000558771 SIN3AQ96ST3 1273 aa7.71□□□□□ -1.18
LRRC28-208ENST00000558771 USB1Q9BQ65 265 aaKnown RBP7.71□□□□□ -1.18
LRRC28-208ENST00000558771 TERF2IPQ9NYB0 399 aa7.71□□□□□ -1.18
LRRC28-208ENST00000558771 PCDHGC3Q9UN70 934 aa7.71□□□□□ -1.18
LRRC28-208ENST00000558771 V9GY48 417 aaPredicted RBP7.71□□□□□ -1.18
LRRC28-208ENST00000558771 C4BP0C0L5 1744 aa7.71□□□□□ -1.18
LRRC28-208ENST00000558771 PCNTO95613 3336 aa7.71□□□□□ -1.18
LRRC28-208ENST00000558771 UBR3Q6ZT12 1888 aa7.7□□□□□ -1.18
LRRC28-208ENST00000558771 HMGB2P26583 209 aaKnown RBP7.7□□□□□ -1.18
LRRC28-208ENST00000558771 COG3Q96JB2 828 aa7.7□□□□□ -1.18
LRRC28-208ENST00000558771 CICQ96RK0 1608 aaPredicted RBP7.7□□□□□ -1.18
LRRC28-208ENST00000558771 TOMM70O94826 608 aa7.69□□□□□ -1.18
LRRC28-208ENST00000558771 MPRIPQ6WCQ1 1025 aa7.69□□□□□ -1.18
LRRC28-208ENST00000558771 RAPGEF4Q8WZA2 1011 aa7.69□□□□□ -1.18
LRRC28-208ENST00000558771 EMID1Q96A84 441 aaPredicted RBP7.69□□□□□ -1.18
LRRC28-208ENST00000558771 PRDM9Q9NQV7 894 aa7.69□□□□□ -1.18
LRRC28-208ENST00000558771 CGNL1Q0VF96 1302 aa7.69□□□□□ -1.18
LRRC28-208ENST00000558771 TATP17735 454 aaPredicted RBP7.68□□□□□ -1.18
LRRC28-208ENST00000558771 GJA5P36382 358 aa7.68□□□□□ -1.18
LRRC28-208ENST00000558771 SLC19A1P41440 591 aa7.68□□□□□ -1.18
LRRC28-208ENST00000558771 NEUROD1Q13562 356 aa7.68□□□□□ -1.18
LRRC28-208ENST00000558771 RRS1Q15050 365 aaKnown RBP7.68□□□□□ -1.18
LRRC28-208ENST00000558771 LIAT1Q6ZQX7 453 aa7.68□□□□□ -1.18
LRRC28-208ENST00000558771 CARD11Q9BXL7 1154 aa7.68□□□□□ -1.18
LRRC28-208ENST00000558771 KDM4CQ9H3R0 1056 aa7.68□□□□□ -1.18
LRRC28-208ENST00000558771 WDR90Q96KV7 1748 aa7.68□□□□□ -1.18
LRRC28-208ENST00000558771 PCDH11XQ9BZA7 1347 aa7.68□□□□□ -1.18
LRRC28-208ENST00000558771 PCDH11YQ9BZA8 1340 aa7.68□□□□□ -1.18
LRRC28-208ENST00000558771 ITGB4P16144 1822 aa7.68□□□□□ -1.18
LRRC28-208ENST00000558771 RTL1A6NKG5 1358 aa7.68□□□□□ -1.18
LRRC28-208ENST00000558771 NSD3Q9BZ95 1437 aa7.68□□□□□ -1.18
LRRC28-208ENST00000558771 KIAA1551Q9HCM1 1747 aa7.67□□□□□ -1.18
LRRC28-208ENST00000558771 C6orf229H3BNL8 230 aa7.67□□□□□ -1.18
LRRC28-208ENST00000558771 SPTLC1O15269 473 aa7.67□□□□□ -1.18
LRRC28-208ENST00000558771 CYP27B1O15528 508 aa7.67□□□□□ -1.18
LRRC28-208ENST00000558771 SSFA2P28290 1259 aa7.67□□□□□ -1.18
LRRC28-208ENST00000558771 MMP16P51512 607 aa7.67□□□□□ -1.18
LRRC28-208ENST00000558771 HTRA3P83110 453 aa7.67□□□□□ -1.18
LRRC28-208ENST00000558771 PLA2G2CQ5R387 149 aa7.67□□□□□ -1.18
LRRC28-208ENST00000558771 COL13A1Q5TAT6 717 aaPredicted RBP7.67□□□□□ -1.18
LRRC28-208ENST00000558771 RSBN1LQ6PCB5 846 aaPredicted RBP7.67□□□□□ -1.18
LRRC28-208ENST00000558771 RIC3Q7Z5B4 369 aa7.67□□□□□ -1.18
LRRC28-208ENST00000558771 RETREG3Q86VR2 466 aa7.67□□□□□ -1.18
LRRC28-208ENST00000558771 LINC00116Q8NCU8 138 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms