RNA–Protein interactions for RNA: ENST00000557845.1

NEDD4-212, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 2

Gene NEDD4, Length 374 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-212ENST00000557845 ANKRD13DQ6ZTN6 518 aa21.65■■□□□ 1.06
NEDD4-212ENST00000557845 C8orf58Q8NAV2 365 aa21.65■■□□□ 1.06
NEDD4-212ENST00000557845 NMRK2Q9NPI5 230 aa21.65■■□□□ 1.06
NEDD4-212ENST00000557845 ANKRD36CQ5JPF3 1778 aa21.65■■□□□ 1.06
NEDD4-212ENST00000557845 RIC1Q4ADV7 1423 aa21.64■■□□□ 1.06
NEDD4-212ENST00000557845 KDM2BQ8NHM5 1336 aa21.64■■□□□ 1.05
NEDD4-212ENST00000557845 LTBP3Q9NS15 1303 aa21.64■■□□□ 1.05
NEDD4-212ENST00000557845 SLC10A5Q5PT55 438 aa21.64■■□□□ 1.05
NEDD4-212ENST00000557845 PLBD2Q8NHP8 589 aa21.64■■□□□ 1.05
NEDD4-212ENST00000557845 TAOK3Q9H2K8 898 aa21.64■■□□□ 1.05
NEDD4-212ENST00000557845 DICER1Q9UPY3 1922 aaKnown RBP21.63■■□□□ 1.05
NEDD4-212ENST00000557845 NLRP10Q86W26 655 aa21.63■■□□□ 1.05
NEDD4-212ENST00000557845 HOXA10P31260 410 aaPredicted RBP21.62■■□□□ 1.05
NEDD4-212ENST00000557845 CCDC93Q567U6 631 aa21.62■■□□□ 1.05
NEDD4-212ENST00000557845 RPGRQ92834 1020 aaKnown RBP21.62■■□□□ 1.05
NEDD4-212ENST00000557845 NLRP3Q96P20 1036 aa21.62■■□□□ 1.05
NEDD4-212ENST00000557845 GLTPD2A6NH11 291 aa21.61■■□□□ 1.05
NEDD4-212ENST00000557845 TSPYL6Q8N831 410 aa21.61■■□□□ 1.05
NEDD4-212ENST00000557845 TSR2Q969E8 191 aaKnown RBP21.61■■□□□ 1.05
NEDD4-212ENST00000557845 RRAGCQ9HB90 399 aa21.61■■□□□ 1.05
NEDD4-212ENST00000557845 RNF123Q5XPI4 1314 aa21.6■■□□□ 1.05
NEDD4-212ENST00000557845 TOMM70O94826 608 aa21.6■■□□□ 1.05
NEDD4-212ENST00000557845 OLFM4Q6UX06 510 aa21.6■■□□□ 1.05
NEDD4-212ENST00000557845 C3orf67Q6ZVT6 689 aa21.6■■□□□ 1.05
NEDD4-212ENST00000557845 RBM17Q96I25 401 aaKnown RBP21.6■■□□□ 1.05
NEDD4-212ENST00000557845 CHMP4AQ9BY43 222 aa21.6■■□□□ 1.05
NEDD4-212ENST00000557845 PHAXQ9H814 394 aaKnown RBP21.6■■□□□ 1.05
NEDD4-212ENST00000557845 TRMT112Q9UI30 125 aaKnown RBP21.6■■□□□ 1.05
NEDD4-212ENST00000557845 TIAM2Q8IVF5 1701 aa21.6■■□□□ 1.05
NEDD4-212ENST00000557845 CCDC30Q5VVM6 783 aa21.59■■□□□ 1.05
NEDD4-212ENST00000557845 RTKN2Q8IZC4 609 aa21.59■■□□□ 1.05
NEDD4-212ENST00000557845 FAM9BQ8IZU0 186 aa21.59■■□□□ 1.05
NEDD4-212ENST00000557845 CRAMP1Q96RY5 1269 aa21.59■■□□□ 1.05
NEDD4-212ENST00000557845 SALL2Q9Y467 1007 aaPredicted RBP21.59■■□□□ 1.05
NEDD4-212ENST00000557845 IL16Q14005 1332 aa21.58■■□□□ 1.05
NEDD4-212ENST00000557845 FKBP4Q02790 459 aaKnown RBP eCLIP21.58■■□□□ 1.05
NEDD4-212ENST00000557845 SYNE4Q8N205 404 aa21.58■■□□□ 1.05
NEDD4-212ENST00000557845 ISCA1Q9BUE6 129 aa21.58■■□□□ 1.05
NEDD4-212ENST00000557845 SH3TC1Q8TE82 1336 aa21.57■■□□□ 1.04
NEDD4-212ENST00000557845 ATP5J2-PTCD1G3V325 749 aa21.57■■□□□ 1.04
NEDD4-212ENST00000557845 DPY19L2Q6NUT2 758 aa21.57■■□□□ 1.04
NEDD4-212ENST00000557845 RIC3Q7Z5B4 369 aa21.57■■□□□ 1.04
NEDD4-212ENST00000557845 HCLS1P14317 486 aaPredicted RBP21.56■■□□□ 1.04
NEDD4-212ENST00000557845 CC2D2BQ6DHV5 1058 aa21.56■■□□□ 1.04
NEDD4-212ENST00000557845 WDR63Q8IWG1 891 aa21.56■■□□□ 1.04
NEDD4-212ENST00000557845 C16orf71Q8IYS4 520 aaPredicted RBP21.56■■□□□ 1.04
NEDD4-212ENST00000557845 ZNF428Q96B54 188 aa21.56■■□□□ 1.04
NEDD4-212ENST00000557845 GOLGA2Q08379 1002 aa21.55■■□□□ 1.04
NEDD4-212ENST00000557845 TRIM28Q13263 835 aaKnown RBP21.55■■□□□ 1.04
NEDD4-212ENST00000557845 LAMB2P55268 1798 aa21.54■■□□□ 1.04
NEDD4-212ENST00000557845 TWISTNBQ3B726 338 aaPredicted RBP21.54■■□□□ 1.04
NEDD4-212ENST00000557845 ZNF277Q9NRM2 450 aaPredicted RBP21.54■■□□□ 1.04
NEDD4-212ENST00000557845 TCERG1O14776 1098 aaKnown RBP21.53■■□□□ 1.04
NEDD4-212ENST00000557845 PPEF1O14829 653 aaPredicted RBP21.53■■□□□ 1.04
NEDD4-212ENST00000557845 VEGFAP15692 232 aaPredicted RBP21.53■■□□□ 1.04
NEDD4-212ENST00000557845 HSPA6P17066 643 aa21.53■■□□□ 1.04
NEDD4-212ENST00000557845 RBM46Q8TBY0 533 aaKnown RBP21.53■■□□□ 1.04
NEDD4-212ENST00000557845 FAM89AQ96GI7 184 aa21.53■■□□□ 1.04
NEDD4-212ENST00000557845 GRIPAP1Q4V328 841 aa21.52■■□□□ 1.04
NEDD4-212ENST00000557845 PSMD1Q99460 953 aa21.52■■□□□ 1.04
NEDD4-212ENST00000557845 SNED1Q8TER0 1413 aa21.52■■□□□ 1.04
NEDD4-212ENST00000557845 POTECB2RU33 542 aa21.51■■□□□ 1.03
NEDD4-212ENST00000557845 DDX58O95786 925 aaKnown RBP21.51■■□□□ 1.03
NEDD4-212ENST00000557845 STK31Q9BXU1 1019 aa21.51■■□□□ 1.03
NEDD4-212ENST00000557845 ABCC4O15439 1325 aa21.51■■□□□ 1.03
NEDD4-212ENST00000557845 BBOX1O75936 387 aa21.5■■□□□ 1.03
NEDD4-212ENST00000557845 IARSP41252 1262 aaKnown RBP21.5■■□□□ 1.03
NEDD4-212ENST00000557845 MYD88Q99836 296 aa21.5■■□□□ 1.03
NEDD4-212ENST00000557845 FANCIQ9NVI1 1328 aa21.5■■□□□ 1.03
NEDD4-212ENST00000557845 DDX60Q8IY21 1712 aaKnown RBP21.49■■□□□ 1.03
NEDD4-212ENST00000557845 WDR90Q96KV7 1748 aa21.49■■□□□ 1.03
NEDD4-212ENST00000557845 DDNO94850 711 aaPredicted RBP21.49■■□□□ 1.03
NEDD4-212ENST00000557845 RTL5Q5HYW3 569 aaPredicted RBP21.49■■□□□ 1.03
NEDD4-212ENST00000557845 DDX46Q7L014 1031 aaKnown RBP21.49■■□□□ 1.03
NEDD4-212ENST00000557845 METTL22Q9BUU2 404 aaPredicted RBP21.49■■□□□ 1.03
NEDD4-212ENST00000557845 TMX4Q9H1E5 349 aaPredicted RBP21.49■■□□□ 1.03
NEDD4-212ENST00000557845 ATP6V0A2Q9Y487 856 aa21.49■■□□□ 1.03
NEDD4-212ENST00000557845 TAF1P21675 1872 aa21.48■■□□□ 1.03
NEDD4-212ENST00000557845 SLC51AQ86UW1 340 aa21.48■■□□□ 1.03
NEDD4-212ENST00000557845 SLC4A2P04920 1241 aa21.47■■□□□ 1.03
NEDD4-212ENST00000557845 FSTL1Q12841 308 aa21.47■■□□□ 1.03
NEDD4-212ENST00000557845 SF3B3Q15393 1217 aaKnown RBP21.47■■□□□ 1.03
NEDD4-212ENST00000557845 KSR2Q6VAB6 950 aa21.47■■□□□ 1.03
NEDD4-212ENST00000557845 SP8Q8IXZ3 490 aa21.47■■□□□ 1.03
NEDD4-212ENST00000557845 ZBTB38Q8NAP3 1195 aaPredicted RBP21.47■■□□□ 1.03
NEDD4-212ENST00000557845 CCDC191Q8NCU4 936 aa21.47■■□□□ 1.03
NEDD4-212ENST00000557845 SPINK5Q9NQ38 1064 aaPredicted RBP21.47■■□□□ 1.03
NEDD4-212ENST00000557845 MAP3K2Q9Y2U5 619 aa21.47■■□□□ 1.03
NEDD4-212ENST00000557845 PI4KAP2A4QPH2 592 aa21.46■■□□□ 1.03
NEDD4-212ENST00000557845 IRS4O14654 1257 aaPredicted RBP21.46■■□□□ 1.03
NEDD4-212ENST00000557845 VAMP4O75379 141 aa21.46■■□□□ 1.03
NEDD4-212ENST00000557845 EXOSC9Q06265 439 aaKnown RBP21.46■■□□□ 1.03
NEDD4-212ENST00000557845 GRAPQ13588 217 aa21.46■■□□□ 1.03
NEDD4-212ENST00000557845 G2E3Q7L622 706 aa21.46■■□□□ 1.03
NEDD4-212ENST00000557845 PI4KAP1Q8N8J0 262 aa21.46■■□□□ 1.03
NEDD4-212ENST00000557845 GRAPLQ8TC17 118 aaPredicted RBP21.46■■□□□ 1.03
NEDD4-212ENST00000557845 FZD9O00144 591 aa21.45■■□□□ 1.02
NEDD4-212ENST00000557845 JDP2Q8WYK2 163 aa21.45■■□□□ 1.02
NEDD4-212ENST00000557845 SMC1BQ8NDV3 1235 aa21.44■■□□□ 1.02
NEDD4-212ENST00000557845 CWC25Q9NXE8 425 aaPredicted RBP21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms