RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 TNMDQ9H2S6 317 aa14.04□□□□□ -0.16
VIPAS39-211ENST00000557658 C9orf78Q9NZ63 289 aaPredicted RBP14.04□□□□□ -0.16
VIPAS39-211ENST00000557658 MARF1Q9Y4F3 1742 aaKnown RBP14.04□□□□□ -0.16
VIPAS39-211ENST00000557658 MED1Q15648 1581 aaPredicted RBP14.03□□□□□ -0.16
VIPAS39-211ENST00000557658 ALDH1L1O75891 902 aa14.03□□□□□ -0.16
VIPAS39-211ENST00000557658 DMTNQ08495 405 aa14.03□□□□□ -0.16
VIPAS39-211ENST00000557658 NUTM2GQ5VZR2 741 aa14.03□□□□□ -0.16
VIPAS39-211ENST00000557658 FERMT3Q86UX7 667 aa14.03□□□□□ -0.16
VIPAS39-211ENST00000557658 USHBP1Q8N6Y0 703 aa14.03□□□□□ -0.16
VIPAS39-211ENST00000557658 CHMP3Q9Y3E7 222 aa14.03□□□□□ -0.16
VIPAS39-211ENST00000557658 USP54Q70EL1 1684 aa14.03□□□□□ -0.16
VIPAS39-211ENST00000557658 PTGS1P23219 599 aa14.03□□□□□ -0.16
VIPAS39-211ENST00000557658 CAMK4Q16566 473 aa14.03□□□□□ -0.16
VIPAS39-211ENST00000557658 RNF20Q5VTR2 975 aa14.03□□□□□ -0.16
VIPAS39-211ENST00000557658 AACSQ86V21 672 aa14.03□□□□□ -0.16
VIPAS39-211ENST00000557658 DDX19AQ9NUU7 478 aaKnown RBP14.03□□□□□ -0.16
VIPAS39-211ENST00000557658 EID1Q9Y6B2 187 aa14.03□□□□□ -0.16
VIPAS39-211ENST00000557658 SLC27A2O14975 620 aa14.02□□□□□ -0.16
VIPAS39-211ENST00000557658 BLOC1S2Q6QNY1 142 aa14.02□□□□□ -0.16
VIPAS39-211ENST00000557658 LUZP1Q86V48 1076 aa14.02□□□□□ -0.16
VIPAS39-211ENST00000557658 NPHP3Q7Z494 1330 aa14.02□□□□□ -0.16
VIPAS39-211ENST00000557658 ANXA1P04083 346 aa14.02□□□□□ -0.17
VIPAS39-211ENST00000557658 CBX1P83916 185 aa14.02□□□□□ -0.17
VIPAS39-211ENST00000557658 NMIQ13287 307 aaPredicted RBP14.02□□□□□ -0.17
VIPAS39-211ENST00000557658 SPATA32Q96LK8 384 aa14.02□□□□□ -0.17
VIPAS39-211ENST00000557658 DACT1Q9NYF0 836 aa14.02□□□□□ -0.17
VIPAS39-211ENST00000557658 DBF4Q9UBU7 674 aaPredicted RBP14.02□□□□□ -0.17
VIPAS39-211ENST00000557658 ADGRL3Q9HAR2 1447 aa14.02□□□□□ -0.17
VIPAS39-211ENST00000557658 CTIFO43310 598 aaKnown RBP14.01□□□□□ -0.17
VIPAS39-211ENST00000557658 ZSCAN20P17040 1043 aaPredicted RBP14.01□□□□□ -0.17
VIPAS39-211ENST00000557658 ANO6Q4KMQ2 910 aa14.01□□□□□ -0.17
VIPAS39-211ENST00000557658 DRC7Q8IY82 874 aa14.01□□□□□ -0.17
VIPAS39-211ENST00000557658 ABTB2Q8N961 1025 aa14.01□□□□□ -0.17
VIPAS39-211ENST00000557658 ANKRD7Q92527 254 aa14.01□□□□□ -0.17
VIPAS39-211ENST00000557658 FAM227BQ96M60 508 aa14.01□□□□□ -0.17
VIPAS39-211ENST00000557658 ALDH8A1Q9H2A2 487 aaPredicted RBP14.01□□□□□ -0.17
VIPAS39-211ENST00000557658 LGR6Q9HBX8 967 aa14.01□□□□□ -0.17
VIPAS39-211ENST00000557658 CBX8Q9HC52 389 aa14.01□□□□□ -0.17
VIPAS39-211ENST00000557658 SNRKQ9NRH2 765 aa14.01□□□□□ -0.17
VIPAS39-211ENST00000557658 PA2G4Q9UQ80 394 aaKnown RBP14.01□□□□□ -0.17
VIPAS39-211ENST00000557658 TEFQ10587 303 aa14.01□□□□□ -0.17
VIPAS39-211ENST00000557658 FAM173BQ6P4H8 233 aa14.01□□□□□ -0.17
VIPAS39-211ENST00000557658 CKAP2LQ8IYA6 745 aa14.01□□□□□ -0.17
VIPAS39-211ENST00000557658 ANKARQ7Z5J8 1434 aa14□□□□□ -0.17
VIPAS39-211ENST00000557658 RPS6KB1P23443 525 aa14□□□□□ -0.17
VIPAS39-211ENST00000557658 CCDC186Q7Z3E2 898 aa14□□□□□ -0.17
VIPAS39-211ENST00000557658 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14□□□□□ -0.17
VIPAS39-211ENST00000557658 CLSTN2Q9H4D0 955 aa14□□□□□ -0.17
VIPAS39-211ENST00000557658 MAP3K2Q9Y2U5 619 aa14□□□□□ -0.17
VIPAS39-211ENST00000557658 TBX22Q9Y458 520 aa14□□□□□ -0.17
VIPAS39-211ENST00000557658 BTBD11A6QL63 1104 aa14□□□□□ -0.17
VIPAS39-211ENST00000557658 KCNQ3O43525 872 aa14□□□□□ -0.17
VIPAS39-211ENST00000557658 ATP2B3Q16720 1220 aa14□□□□□ -0.17
VIPAS39-211ENST00000557658 RBM43Q6ZSC3 357 aaKnown RBP14□□□□□ -0.17
VIPAS39-211ENST00000557658 TRIM5Q9C035 493 aa14□□□□□ -0.17
VIPAS39-211ENST00000557658 ZNF75DP51815 510 aa13.99□□□□□ -0.17
VIPAS39-211ENST00000557658 G3BP1Q13283 466 aaKnown RBP eCLIP13.99□□□□□ -0.17
VIPAS39-211ENST00000557658 KSR2Q6VAB6 950 aa13.99□□□□□ -0.17
VIPAS39-211ENST00000557658 TDRD7Q8NHU6 1098 aaKnown RBP13.99□□□□□ -0.17
VIPAS39-211ENST00000557658 LEO1Q8WVC0 666 aaPredicted RBP13.99□□□□□ -0.17
VIPAS39-211ENST00000557658 GTPBP4Q9BZE4 634 aaKnown RBP13.99□□□□□ -0.17
VIPAS39-211ENST00000557658 LTN1O94822 1766 aa13.99□□□□□ -0.17
VIPAS39-211ENST00000557658 LARP1Q6PKG0 1096 aaKnown RBP13.99□□□□□ -0.17
VIPAS39-211ENST00000557658 HMG20BQ9P0W2 317 aa13.99□□□□□ -0.17
VIPAS39-211ENST00000557658 TFIP11Q9UBB9 837 aaKnown RBP13.99□□□□□ -0.17
VIPAS39-211ENST00000557658 PLA2G4DQ86XP0 818 aa13.98□□□□□ -0.17
VIPAS39-211ENST00000557658 FSD1Q9BTV5 496 aa13.98□□□□□ -0.17
VIPAS39-211ENST00000557658 SYCP1Q15431 976 aa13.98□□□□□ -0.17
VIPAS39-211ENST00000557658 EAF2Q96CJ1 260 aaPredicted RBP13.98□□□□□ -0.17
VIPAS39-211ENST00000557658 NPHP4O75161 1426 aaPredicted RBP13.98□□□□□ -0.17
VIPAS39-211ENST00000557658 A0A0D9SFI3 127 aa13.97□□□□□ -0.17
VIPAS39-211ENST00000557658 SMTNL1A8MU46 457 aa13.97□□□□□ -0.17
VIPAS39-211ENST00000557658 SASH1O94885 1247 aa13.97□□□□□ -0.17
VIPAS39-211ENST00000557658 CAVIN2O95810 425 aa13.97□□□□□ -0.17
VIPAS39-211ENST00000557658 TOB2Q14106 344 aaPredicted RBP13.97□□□□□ -0.17
VIPAS39-211ENST00000557658 AKAP4Q5JQC9 854 aa13.97□□□□□ -0.17
VIPAS39-211ENST00000557658 ZSCAN25Q6NSZ9 544 aa13.97□□□□□ -0.17
VIPAS39-211ENST00000557658 BICD2Q8TD16 824 aa13.97□□□□□ -0.17
VIPAS39-211ENST00000557658 IP6K1Q92551 441 aa13.97□□□□□ -0.17
VIPAS39-211ENST00000557658 TCEANC2Q96MN5 208 aa13.97□□□□□ -0.17
VIPAS39-211ENST00000557658 CCDC8Q9H0W5 538 aaPredicted RBP13.97□□□□□ -0.17
VIPAS39-211ENST00000557658 LMO7Q8WWI1 1683 aa13.97□□□□□ -0.17
VIPAS39-211ENST00000557658 SLIT1O75093 1534 aa13.97□□□□□ -0.17
VIPAS39-211ENST00000557658 MED23Q9ULK4 1368 aa13.97□□□□□ -0.17
VIPAS39-211ENST00000557658 ZNF165P49910 485 aa13.97□□□□□ -0.17
VIPAS39-211ENST00000557658 C14orf37Q86TY3 774 aa13.97□□□□□ -0.17
VIPAS39-211ENST00000557658 LRMPQ12912 555 aa13.96□□□□□ -0.17
VIPAS39-211ENST00000557658 CWF19L2Q2TBE0 894 aaKnown RBP13.96□□□□□ -0.17
VIPAS39-211ENST00000557658 TSGA10IPQ3SY00 556 aa13.96□□□□□ -0.17
VIPAS39-211ENST00000557658 NBPF6Q5VWK0 638 aa13.96□□□□□ -0.17
VIPAS39-211ENST00000557658 ZNF530Q6P9A1 599 aaPredicted RBP13.96□□□□□ -0.17
VIPAS39-211ENST00000557658 NBPF4Q96M43 638 aa13.96□□□□□ -0.17
VIPAS39-211ENST00000557658 BOLA2Q9H3K6 86 aa13.96□□□□□ -0.17
VIPAS39-211ENST00000557658 SETD1BQ9UPS6 1966 aaKnown RBP13.96□□□□□ -0.17
VIPAS39-211ENST00000557658 GRM8O00222 908 aa13.96□□□□□ -0.17
VIPAS39-211ENST00000557658 GIGYF1O75420 1035 aaPredicted RBP13.96□□□□□ -0.17
VIPAS39-211ENST00000557658 STK3Q13188 491 aa13.96□□□□□ -0.17
VIPAS39-211ENST00000557658 COL9A3Q14050 684 aaPredicted RBP13.96□□□□□ -0.17
VIPAS39-211ENST00000557658 KRT32Q14532 448 aa13.96□□□□□ -0.17
VIPAS39-211ENST00000557658 LINS1Q8NG48 757 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms