RNA–Protein interactions for RNA: ENST00000557439.5

XRCC3-218, Transcript of X-ray repair cross complementing 3, humanhuman

TSL 5

Gene XRCC3, Length 2,599 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3-218ENST00000557439 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.26■□□□□ 0.99
XRCC3-218ENST00000557439 CYP46A1Q9Y6A2 500 aa21.26■□□□□ 0.99
XRCC3-218ENST00000557439 NCAPD2Q15021 1401 aa21.26■□□□□ 0.99
XRCC3-218ENST00000557439 SLIT3O75094 1523 aa21.26■□□□□ 0.99
XRCC3-218ENST00000557439 VPS37CA5D8V6 355 aaPredicted RBP21.26■□□□□ 0.99
XRCC3-218ENST00000557439 DDX58O95786 925 aaKnown RBP21.26■□□□□ 0.99
XRCC3-218ENST00000557439 FSD1Q9BTV5 496 aa21.26■□□□□ 0.99
XRCC3-218ENST00000557439 ZSWIM6Q9HCJ5 1215 aa21.26■□□□□ 0.99
XRCC3-218ENST00000557439 PHRF1Q9P1Y6 1649 aaKnown RBP21.25■□□□□ 0.99
XRCC3-218ENST00000557439 NEURL1BA8MQ27 555 aa21.25■□□□□ 0.99
XRCC3-218ENST00000557439 CHRNA2Q15822 529 aa21.25■□□□□ 0.99
XRCC3-218ENST00000557439 FAM173BQ6P4H8 233 aa21.25■□□□□ 0.99
XRCC3-218ENST00000557439 ZNF589Q86UQ0 364 aaPredicted RBP21.25■□□□□ 0.99
XRCC3-218ENST00000557439 RAPGEF4Q8WZA2 1011 aa21.25■□□□□ 0.99
XRCC3-218ENST00000557439 TPCN1Q9ULQ1 816 aa21.25■□□□□ 0.99
XRCC3-218ENST00000557439 NOL7Q9UMY1 257 aaKnown RBP21.25■□□□□ 0.99
XRCC3-218ENST00000557439 KDM6AO15550 1401 aaPredicted RBP21.25■□□□□ 0.99
XRCC3-218ENST00000557439 ATP5J2-PTCD1G3V325 749 aa21.24■□□□□ 0.99
XRCC3-218ENST00000557439 PTCD1O75127 700 aaKnown RBP21.24■□□□□ 0.99
XRCC3-218ENST00000557439 FERMT3Q86UX7 667 aa21.24■□□□□ 0.99
XRCC3-218ENST00000557439 C5P01031 1676 aa21.24■□□□□ 0.99
XRCC3-218ENST00000557439 VPS53Q5VIR6 699 aa21.24■□□□□ 0.99
XRCC3-218ENST00000557439 SYAP1Q96A49 352 aaPredicted RBP21.24■□□□□ 0.99
XRCC3-218ENST00000557439 SLC52A2Q9HAB3 445 aa21.24■□□□□ 0.99
XRCC3-218ENST00000557439 MTMR6Q9Y217 621 aa21.24■□□□□ 0.99
XRCC3-218ENST00000557439 NPHP3Q7Z494 1330 aa21.24■□□□□ 0.99
XRCC3-218ENST00000557439 NPHP4O75161 1426 aaPredicted RBP21.23■□□□□ 0.99
XRCC3-218ENST00000557439 SIPA1L3O60292 1781 aaPredicted RBP21.23■□□□□ 0.99
XRCC3-218ENST00000557439 SLC27A2O14975 620 aa21.23■□□□□ 0.99
XRCC3-218ENST00000557439 GCKRQ14397 625 aa21.23■□□□□ 0.99
XRCC3-218ENST00000557439 HCLS1P14317 486 aaPredicted RBP21.22■□□□□ 0.99
XRCC3-218ENST00000557439 CHMP3Q9Y3E7 222 aa21.22■□□□□ 0.99
XRCC3-218ENST00000557439 UTYO14607 1347 aa21.22■□□□□ 0.99
XRCC3-218ENST00000557439 MAP4K1Q92918 833 aa21.22■□□□□ 0.99
XRCC3-218ENST00000557439 OFD1O75665 1012 aa21.21■□□□□ 0.99
XRCC3-218ENST00000557439 CSB-PGBD3P0DP91 1061 aa21.21■□□□□ 0.99
XRCC3-218ENST00000557439 PHKG2P15735 406 aa21.21■□□□□ 0.99
XRCC3-218ENST00000557439 ZKSCAN1P17029 563 aaPredicted RBP21.21■□□□□ 0.99
XRCC3-218ENST00000557439 STK3Q13188 491 aa21.21■□□□□ 0.99
XRCC3-218ENST00000557439 LARP1Q6PKG0 1096 aaKnown RBP21.21■□□□□ 0.99
XRCC3-218ENST00000557439 USP25Q9UHP3 1055 aa21.21■□□□□ 0.99
XRCC3-218ENST00000557439 NEXNQ0ZGT2 675 aa21.21■□□□□ 0.99
XRCC3-218ENST00000557439 GIMAP6Q6P9H5 292 aa21.21■□□□□ 0.99
XRCC3-218ENST00000557439 UBE3BQ7Z3V4 1068 aa21.21■□□□□ 0.99
XRCC3-218ENST00000557439 ZKSCAN5Q9Y2L8 839 aa21.21■□□□□ 0.99
XRCC3-218ENST00000557439 R3HCC1Q9Y3T6 440 aaKnown RBP21.21■□□□□ 0.99
XRCC3-218ENST00000557439 TMEM87AQ8NBN3 555 aa21.2■□□□□ 0.98
XRCC3-218ENST00000557439 ZNF830Q96NB3 372 aaPredicted RBP21.2■□□□□ 0.98
XRCC3-218ENST00000557439 MEGF6O75095 1541 aa21.2■□□□□ 0.98
XRCC3-218ENST00000557439 CCDC129Q6ZRS4 1044 aa21.2■□□□□ 0.98
XRCC3-218ENST00000557439 PTMAP06454 111 aaKnown RBP21.19■□□□□ 0.98
XRCC3-218ENST00000557439 TFCP2Q12800 502 aa21.19■□□□□ 0.98
XRCC3-218ENST00000557439 CCDC183Q5T5S1 534 aa21.19■□□□□ 0.98
XRCC3-218ENST00000557439 KCNB2Q92953 911 aa21.19■□□□□ 0.98
XRCC3-218ENST00000557439 SEC62Q99442 399 aaKnown RBP21.19■□□□□ 0.98
XRCC3-218ENST00000557439 DBNLQ9UJU6 430 aaKnown RBP21.19■□□□□ 0.98
XRCC3-218ENST00000557439 TRPM3Q9HCF6 1732 aaPredicted RBP21.19■□□□□ 0.98
XRCC3-218ENST00000557439 SLFNL1Q499Z3 407 aa21.19■□□□□ 0.98
XRCC3-218ENST00000557439 ANKRD13DQ6ZTN6 518 aa21.19■□□□□ 0.98
XRCC3-218ENST00000557439 CDC37L1Q7L3B6 337 aa21.19■□□□□ 0.98
XRCC3-218ENST00000557439 METTL22Q9BUU2 404 aaPredicted RBP21.19■□□□□ 0.98
XRCC3-218ENST00000557439 OVOS2A0A0G2JMS6 1433 aa21.19■□□□□ 0.98
XRCC3-218ENST00000557439 TATP17735 454 aaPredicted RBP21.18■□□□□ 0.98
XRCC3-218ENST00000557439 UBE2HP62256 183 aa21.18■□□□□ 0.98
XRCC3-218ENST00000557439 HS1BP3Q53T59 392 aa21.18■□□□□ 0.98
XRCC3-218ENST00000557439 TM6SF1Q9BZW5 370 aa21.18■□□□□ 0.98
XRCC3-218ENST00000557439 C1orf167Q5SNV9 1468 aa21.18■□□□□ 0.98
XRCC3-218ENST00000557439 CYP27B1O15528 508 aa21.18■□□□□ 0.98
XRCC3-218ENST00000557439 COL15A1P39059 1388 aa21.18■□□□□ 0.98
XRCC3-218ENST00000557439 DNAJC2Q99543 621 aaKnown RBP21.17■□□□□ 0.98
XRCC3-218ENST00000557439 PLCB2Q00722 1185 aa21.17■□□□□ 0.98
XRCC3-218ENST00000557439 LRP10Q7Z4F1 713 aa21.17■□□□□ 0.98
XRCC3-218ENST00000557439 HDAC5Q9UQL6 1122 aa21.17■□□□□ 0.98
XRCC3-218ENST00000557439 PHF14O94880 888 aa21.16■□□□□ 0.98
XRCC3-218ENST00000557439 LARP1BQ659C4 914 aaKnown RBP21.16■□□□□ 0.98
XRCC3-218ENST00000557439 PTPN12Q05209 780 aaKnown RBP21.16■□□□□ 0.98
XRCC3-218ENST00000557439 SH2B1Q9NRF2 756 aaPredicted RBP21.16■□□□□ 0.98
XRCC3-218ENST00000557439 CCDC39Q9UFE4 941 aa21.16■□□□□ 0.98
XRCC3-218ENST00000557439 BLOC1S2Q6QNY1 142 aa21.15■□□□□ 0.98
XRCC3-218ENST00000557439 ZSCAN31Q96LW9 406 aaPredicted RBP21.15■□□□□ 0.98
XRCC3-218ENST00000557439 DBNDD2Q9BQY9 259 aa21.15■□□□□ 0.98
XRCC3-218ENST00000557439 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP21.15■□□□□ 0.98
XRCC3-218ENST00000557439 CAMTA1Q9Y6Y1 1673 aa21.15■□□□□ 0.98
XRCC3-218ENST00000557439 ZNF142P52746 1687 aaPredicted RBP21.15■□□□□ 0.98
XRCC3-218ENST00000557439 ZNF500O60304 480 aaPredicted RBP21.15■□□□□ 0.98
XRCC3-218ENST00000557439 RFX5P48382 616 aaPredicted RBP21.15■□□□□ 0.98
XRCC3-218ENST00000557439 TOB2Q14106 344 aaPredicted RBP21.15■□□□□ 0.98
XRCC3-218ENST00000557439 TTC5Q8N0Z6 440 aa21.15■□□□□ 0.98
XRCC3-218ENST00000557439 MED23Q9ULK4 1368 aa21.14■□□□□ 0.98
XRCC3-218ENST00000557439 A0A087WZG4 1122 aa21.14■□□□□ 0.97
XRCC3-218ENST00000557439 TNNI3KQ59H18 835 aa21.14■□□□□ 0.97
XRCC3-218ENST00000557439 DDX46Q7L014 1031 aaKnown RBP21.14■□□□□ 0.97
XRCC3-218ENST00000557439 TTC6Q86TZ1 520 aa21.14■□□□□ 0.97
XRCC3-218ENST00000557439 LRRC2Q9BYS8 371 aa21.14■□□□□ 0.97
XRCC3-218ENST00000557439 FPGT-TNNI3KV9GXZ4 949 aa21.14■□□□□ 0.97
XRCC3-218ENST00000557439 TAF5LO75529 589 aa21.13■□□□□ 0.97
XRCC3-218ENST00000557439 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.13■□□□□ 0.97
XRCC3-218ENST00000557439 IFNL2Q8IZJ0 200 aa21.13■□□□□ 0.97
XRCC3-218ENST00000557439 TFIP11Q9UBB9 837 aaKnown RBP21.13■□□□□ 0.97
XRCC3-218ENST00000557439 SCN11AQ9UI33 1791 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms