RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 PSMD1Q99460 953 aa16.69■□□□□ 0.26
SHMT2-230ENST00000557427 CELF2O95319 508 aaKnown RBP16.68■□□□□ 0.26
SHMT2-230ENST00000557427 HMOX1P09601 288 aa16.68■□□□□ 0.26
SHMT2-230ENST00000557427 PIP4K2AP48426 406 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-230ENST00000557427 EIF6P56537 245 aaKnown RBP16.68■□□□□ 0.26
SHMT2-230ENST00000557427 ZNF790Q6PG37 636 aa16.68■□□□□ 0.26
SHMT2-230ENST00000557427 HHIPL1Q96JK4 782 aa16.68■□□□□ 0.26
SHMT2-230ENST00000557427 TEX13AQ9BXU3 409 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-230ENST00000557427 GLIS2Q9BZE0 524 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-230ENST00000557427 CLEC4GQ6UXB4 293 aa16.65■□□□□ 0.26
SHMT2-230ENST00000557427 IL17REQ8NFR9 667 aa16.65■□□□□ 0.26
SHMT2-230ENST00000557427 KCNQ3O43525 872 aa16.64■□□□□ 0.25
SHMT2-230ENST00000557427 ALDH1B1P30837 517 aa16.64■□□□□ 0.25
SHMT2-230ENST00000557427 TPTE2Q6XPS3 522 aa16.64■□□□□ 0.25
SHMT2-230ENST00000557427 USP16Q9Y5T5 823 aa16.64■□□□□ 0.25
SHMT2-230ENST00000557427 FAM177BA6PVY3 158 aa16.63■□□□□ 0.25
SHMT2-230ENST00000557427 ADARB2Q9NS39 739 aaKnown RBP16.63■□□□□ 0.25
SHMT2-230ENST00000557427 GPRC5DQ9NZD1 345 aa16.63■□□□□ 0.25
SHMT2-230ENST00000557427 PGAP2Q9UHJ9 254 aa16.63■□□□□ 0.25
SHMT2-230ENST00000557427 PRAMEF22A3QJZ6 481 aa16.62■□□□□ 0.25
SHMT2-230ENST00000557427 DIAPH1O60610 1272 aaKnown RBP16.62■□□□□ 0.25
SHMT2-230ENST00000557427 LARGE2Q8N3Y3 721 aa16.62■□□□□ 0.25
SHMT2-230ENST00000557427 ZNF408Q9H9D4 720 aa16.62■□□□□ 0.25
SHMT2-230ENST00000557427 NIP7Q9Y221 180 aaKnown RBP eCLIP16.62■□□□□ 0.25
SHMT2-230ENST00000557427 SIPA1L3O60292 1781 aaPredicted RBP16.61■□□□□ 0.25
SHMT2-230ENST00000557427 HIRAP54198 1017 aaPredicted RBP16.61■□□□□ 0.25
SHMT2-230ENST00000557427 NOGQ13253 232 aa16.61■□□□□ 0.25
SHMT2-230ENST00000557427 CRY2Q49AN0 593 aa16.61■□□□□ 0.25
SHMT2-230ENST00000557427 DLK2Q6UY11 383 aa16.61■□□□□ 0.25
SHMT2-230ENST00000557427 NPM2Q86SE8 214 aaKnown RBP16.61■□□□□ 0.25
SHMT2-230ENST00000557427 FMNL2Q96PY5 1086 aa16.61■□□□□ 0.25
SHMT2-230ENST00000557427 FAM155AB1AL88 458 aaPredicted RBP16.6■□□□□ 0.25
SHMT2-230ENST00000557427 CC2D2BQ6DHV5 1058 aa16.59■□□□□ 0.25
SHMT2-230ENST00000557427 ABCC12Q96J65 1359 aa16.59■□□□□ 0.25
SHMT2-230ENST00000557427 U2SURPO15042 1029 aaKnown RBP16.58■□□□□ 0.24
SHMT2-230ENST00000557427 TEFQ10587 303 aa16.58■□□□□ 0.24
SHMT2-230ENST00000557427 HLFQ16534 295 aa16.58■□□□□ 0.24
SHMT2-230ENST00000557427 ZNF652Q9Y2D9 606 aa16.58■□□□□ 0.24
SHMT2-230ENST00000557427 NPC1L1Q9UHC9 1359 aa16.58■□□□□ 0.24
SHMT2-230ENST00000557427 NBPF26B4DH59 902 aa16.57■□□□□ 0.24
SHMT2-230ENST00000557427 GMPSP49915 693 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-230ENST00000557427 HUNKP57058 714 aa16.57■□□□□ 0.24
SHMT2-230ENST00000557427 CXCL9Q07325 125 aa16.57■□□□□ 0.24
SHMT2-230ENST00000557427 NBPF10Q6P3W6 841 aaKnown RBP16.57■□□□□ 0.24
SHMT2-230ENST00000557427 NIM1KQ8IY84 436 aa16.57■□□□□ 0.24
SHMT2-230ENST00000557427 NBPF15Q8N660 670 aa16.57■□□□□ 0.24
SHMT2-230ENST00000557427 RNF186Q9NXI6 227 aa16.57■□□□□ 0.24
SHMT2-230ENST00000557427 SAGE1Q9NXZ1 904 aa16.57■□□□□ 0.24
SHMT2-230ENST00000557427 TRPA1O75762 1119 aa16.56■□□□□ 0.24
SHMT2-230ENST00000557427 HOXA10P31260 410 aaPredicted RBP16.56■□□□□ 0.24
SHMT2-230ENST00000557427 KIF23Q02241 960 aaPredicted RBP16.56■□□□□ 0.24
SHMT2-230ENST00000557427 AOC3Q16853 763 aa16.56■□□□□ 0.24
SHMT2-230ENST00000557427 CDC37L1Q7L3B6 337 aa16.56■□□□□ 0.24
SHMT2-230ENST00000557427 NUTM1Q86Y26 1132 aa16.56■□□□□ 0.24
SHMT2-230ENST00000557427 TRPM4Q8TD43 1214 aa16.56■□□□□ 0.24
SHMT2-230ENST00000557427 SHTN1A0MZ66 631 aa16.55■□□□□ 0.24
SHMT2-230ENST00000557427 TCERG1O14776 1098 aaKnown RBP16.55■□□□□ 0.24
SHMT2-230ENST00000557427 ZC3H15Q8WU90 426 aaKnown RBP16.55■□□□□ 0.24
SHMT2-230ENST00000557427 GNAT3A8MTJ3 354 aa16.54■□□□□ 0.24
SHMT2-230ENST00000557427 RGL2O15211 777 aa16.54■□□□□ 0.24
SHMT2-230ENST00000557427 PPIP5K2O43314 1243 aa16.54■□□□□ 0.24
SHMT2-230ENST00000557427 PPP2R1AP30153 589 aa16.54■□□□□ 0.24
SHMT2-230ENST00000557427 RGMBQ6NW40 437 aa16.54■□□□□ 0.24
SHMT2-230ENST00000557427 CTU1Q7Z7A3 348 aaKnown RBP16.54■□□□□ 0.24
SHMT2-230ENST00000557427 USP48Q86UV5 1035 aa16.54■□□□□ 0.24
SHMT2-230ENST00000557427 HPS5Q9UPZ3 1129 aa16.54■□□□□ 0.24
SHMT2-230ENST00000557427 CEMIPQ8WUJ3 1361 aa16.53■□□□□ 0.24
SHMT2-230ENST00000557427 BTBD11A6QL63 1104 aa16.53■□□□□ 0.24
SHMT2-230ENST00000557427 GTF2E1P29083 439 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-230ENST00000557427 CFAP53Q96M91 514 aa16.53■□□□□ 0.24
SHMT2-230ENST00000557427 ZNRF3Q9ULT6 936 aa16.53■□□□□ 0.24
SHMT2-230ENST00000557427 GRIPAP1Q4V328 841 aa16.52■□□□□ 0.24
SHMT2-230ENST00000557427 HABP4Q5JVS0 413 aaKnown RBP16.52■□□□□ 0.24
SHMT2-230ENST00000557427 C3orf67Q6ZVT6 689 aa16.52■□□□□ 0.24
SHMT2-230ENST00000557427 CSRNP1Q96S65 589 aa16.52■□□□□ 0.24
SHMT2-230ENST00000557427 RIC1Q4ADV7 1423 aa16.52■□□□□ 0.23
SHMT2-230ENST00000557427 PPEF1O14829 653 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-230ENST00000557427 RPGRQ92834 1020 aaKnown RBP16.51■□□□□ 0.23
SHMT2-230ENST00000557427 CRAMP1Q96RY5 1269 aa16.51■□□□□ 0.23
SHMT2-230ENST00000557427 PRKRIP1Q9H875 184 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-230ENST00000557427 RAD17O75943 681 aa16.49■□□□□ 0.23
SHMT2-230ENST00000557427 SNRPA1P09661 255 aaKnown RBP16.49■□□□□ 0.23
SHMT2-230ENST00000557427 CCDC102AQ96A19 550 aa16.49■□□□□ 0.23
SHMT2-230ENST00000557427 GCC1Q96CN9 775 aa16.49■□□□□ 0.23
SHMT2-230ENST00000557427 VPS33BQ9H267 617 aa16.49■□□□□ 0.23
SHMT2-230ENST00000557427 CNOT7Q9UIV1 285 aaKnown RBP16.49■□□□□ 0.23
SHMT2-230ENST00000557427 NUDCQ9Y266 331 aa16.49■□□□□ 0.23
SHMT2-230ENST00000557427 GTF3C3Q9Y5Q9 886 aa16.49■□□□□ 0.23
SHMT2-230ENST00000557427 CDHR2Q9BYE9 1310 aa16.48■□□□□ 0.23
SHMT2-230ENST00000557427 ZNF157P51786 506 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-230ENST00000557427 GAS2L2Q8NHY3 880 aa16.48■□□□□ 0.23
SHMT2-230ENST00000557427 RBM17Q96I25 401 aaKnown RBP16.48■□□□□ 0.23
SHMT2-230ENST00000557427 RTFDC1Q9BY42 306 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-230ENST00000557427 NYXQ9GZU5 481 aa16.48■□□□□ 0.23
SHMT2-230ENST00000557427 GBA2Q9HCG7 927 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-230ENST00000557427 AKAP11Q9UKA4 1901 aa16.48■□□□□ 0.23
SHMT2-230ENST00000557427 EGFRP00533 1210 aa16.47■□□□□ 0.23
SHMT2-230ENST00000557427 U2AF1L5P0DN76 240 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-230ENST00000557427 U2AF1Q01081 240 aaKnown RBP eCLIP16.47■□□□□ 0.23
SHMT2-230ENST00000557427 SUSD4Q5VX71 490 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms