RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 UBR2Q8IWV8 1755 aa12.6□□□□□ -0.39
SYNE2-224ENST00000557024 PIP4K2AP48426 406 aaPredicted RBP12.59□□□□□ -0.39
SYNE2-224ENST00000557024 SYNE4Q8N205 404 aa12.59□□□□□ -0.39
SYNE2-224ENST00000557024 GJA3Q9Y6H8 435 aa12.59□□□□□ -0.39
SYNE2-224ENST00000557024 TRAF5O00463 557 aa12.58□□□□□ -0.4
SYNE2-224ENST00000557024 AOC2O75106 756 aa12.58□□□□□ -0.4
SYNE2-224ENST00000557024 IL17REQ8NFR9 667 aa12.58□□□□□ -0.4
SYNE2-224ENST00000557024 FMNL2Q96PY5 1086 aa12.58□□□□□ -0.4
SYNE2-224ENST00000557024 KNSTRNQ9Y448 316 aa12.58□□□□□ -0.4
SYNE2-224ENST00000557024 KLRG2A4D1S0 409 aaPredicted RBP12.57□□□□□ -0.4
SYNE2-224ENST00000557024 FAM177BA6PVY3 158 aa12.57□□□□□ -0.4
SYNE2-224ENST00000557024 HAX1O00165 279 aa12.57□□□□□ -0.4
SYNE2-224ENST00000557024 LMOD1P29536 600 aaPredicted RBP12.57□□□□□ -0.4
SYNE2-224ENST00000557024 CST9Q5W186 159 aa12.57□□□□□ -0.4
SYNE2-224ENST00000557024 JDP2Q8WYK2 163 aa12.57□□□□□ -0.4
SYNE2-224ENST00000557024 MCOLN1Q9GZU1 580 aa12.57□□□□□ -0.4
SYNE2-224ENST00000557024 THSD7BQ9C0I4 1608 aa12.57□□□□□ -0.4
SYNE2-224ENST00000557024 KCNQ3O43525 872 aa12.56□□□□□ -0.4
SYNE2-224ENST00000557024 EPS15P42566 896 aa12.56□□□□□ -0.4
SYNE2-224ENST00000557024 EIF6P56537 245 aaKnown RBP12.56□□□□□ -0.4
SYNE2-224ENST00000557024 PLCB2Q00722 1185 aa12.56□□□□□ -0.4
SYNE2-224ENST00000557024 CIZ1Q9ULV3 898 aaPredicted RBP12.56□□□□□ -0.4
SYNE2-224ENST00000557024 TIMELESSQ9UNS1 1208 aa12.56□□□□□ -0.4
SYNE2-224ENST00000557024 NIP7Q9Y221 180 aaKnown RBP eCLIP12.56□□□□□ -0.4
SYNE2-224ENST00000557024 ZNF652Q9Y2D9 606 aa12.56□□□□□ -0.4
SYNE2-224ENST00000557024 TLL2Q9Y6L7 1015 aa12.56□□□□□ -0.4
SYNE2-224ENST00000557024 CACNA1SQ13698 1873 aa12.56□□□□□ -0.4
SYNE2-224ENST00000557024 ARFGEF2Q9Y6D5 1785 aa12.56□□□□□ -0.4
SYNE2-224ENST00000557024 GNAT3A8MTJ3 354 aa12.55□□□□□ -0.4
SYNE2-224ENST00000557024 DIAPH1O60610 1272 aaKnown RBP12.55□□□□□ -0.4
SYNE2-224ENST00000557024 HSPA5P11021 654 aaKnown RBP12.55□□□□□ -0.4
SYNE2-224ENST00000557024 SCNN1DP51172 638 aa12.55□□□□□ -0.4
SYNE2-224ENST00000557024 CLEC4GQ6UXB4 293 aa12.55□□□□□ -0.4
SYNE2-224ENST00000557024 TPTE2Q6XPS3 522 aa12.55□□□□□ -0.4
SYNE2-224ENST00000557024 PRAMEF22A3QJZ6 481 aa12.54□□□□□ -0.4
SYNE2-224ENST00000557024 ALDH1B1P30837 517 aa12.54□□□□□ -0.4
SYNE2-224ENST00000557024 MAP2K2P36507 400 aa12.54□□□□□ -0.4
SYNE2-224ENST00000557024 PSMD1Q99460 953 aa12.54□□□□□ -0.4
SYNE2-224ENST00000557024 ZBTB47Q9UFB7 747 aaPredicted RBP12.54□□□□□ -0.4
SYNE2-224ENST00000557024 USP16Q9Y5T5 823 aa12.54□□□□□ -0.4
SYNE2-224ENST00000557024 COL4A5P29400 1685 aa12.54□□□□□ -0.4
SYNE2-224ENST00000557024 SNED1Q8TER0 1413 aa12.54□□□□□ -0.4
SYNE2-224ENST00000557024 BTBD11A6QL63 1104 aa12.53□□□□□ -0.4
SYNE2-224ENST00000557024 EIF4G2P78344 907 aaKnown RBP eCLIP12.53□□□□□ -0.4
SYNE2-224ENST00000557024 DGKZQ13574 1117 aa12.53□□□□□ -0.4
SYNE2-224ENST00000557024 GAS2L2Q8NHY3 880 aa12.53□□□□□ -0.4
SYNE2-224ENST00000557024 LTBP1Q14766 1721 aa12.53□□□□□ -0.4
SYNE2-224ENST00000557024 BCORQ6W2J9 1755 aa12.52□□□□□ -0.41
SYNE2-224ENST00000557024 RGL2O15211 777 aa12.52□□□□□ -0.41
SYNE2-224ENST00000557024 CA12O43570 354 aa12.52□□□□□ -0.41
SYNE2-224ENST00000557024 GTF2E1P29083 439 aaPredicted RBP12.52□□□□□ -0.41
SYNE2-224ENST00000557024 USP50Q70EL3 339 aaPredicted RBP12.52□□□□□ -0.41
SYNE2-224ENST00000557024 SLC51AQ86UW1 340 aa12.52□□□□□ -0.41
SYNE2-224ENST00000557024 LARGE2Q8N3Y3 721 aa12.52□□□□□ -0.41
SYNE2-224ENST00000557024 TNRC18O15417 2968 aaPredicted RBP12.52□□□□□ -0.41
SYNE2-224ENST00000557024 U2SURPO15042 1029 aaKnown RBP12.51□□□□□ -0.41
SYNE2-224ENST00000557024 CELF2O95319 508 aaKnown RBP12.51□□□□□ -0.41
SYNE2-224ENST00000557024 SAPCD2Q86UD0 394 aa12.51□□□□□ -0.41
SYNE2-224ENST00000557024 NBPF26B4DH59 902 aa12.5□□□□□ -0.41
SYNE2-224ENST00000557024 BRPF1P55201 1214 aaPredicted RBP12.5□□□□□ -0.41
SYNE2-224ENST00000557024 HLFQ16534 295 aa12.5□□□□□ -0.41
SYNE2-224ENST00000557024 CRY2Q49AN0 593 aa12.5□□□□□ -0.41
SYNE2-224ENST00000557024 CC2D2BQ6DHV5 1058 aa12.5□□□□□ -0.41
SYNE2-224ENST00000557024 CIAPIN1Q6FI81 312 aa12.5□□□□□ -0.41
SYNE2-224ENST00000557024 NBPF10Q6P3W6 841 aaKnown RBP12.5□□□□□ -0.41
SYNE2-224ENST00000557024 NUTM1Q86Y26 1132 aa12.5□□□□□ -0.41
SYNE2-224ENST00000557024 NBPF15Q8N660 670 aa12.5□□□□□ -0.41
SYNE2-224ENST00000557024 SP7Q8TDD2 431 aaPredicted RBP12.5□□□□□ -0.41
SYNE2-224ENST00000557024 GLIS2Q9BZE0 524 aaPredicted RBP12.5□□□□□ -0.41
SYNE2-224ENST00000557024 CEMIPQ8WUJ3 1361 aa12.5□□□□□ -0.41
SYNE2-224ENST00000557024 ABCC12Q96J65 1359 aa12.5□□□□□ -0.41
SYNE2-224ENST00000557024 TCERG1O14776 1098 aaKnown RBP12.49□□□□□ -0.41
SYNE2-224ENST00000557024 SNRPA1P09661 255 aaKnown RBP12.49□□□□□ -0.41
SYNE2-224ENST00000557024 PRKAR2AP13861 404 aaKnown RBP12.49□□□□□ -0.41
SYNE2-224ENST00000557024 NIM1KQ8IY84 436 aa12.49□□□□□ -0.41
SYNE2-224ENST00000557024 RPGRQ92834 1020 aaKnown RBP12.49□□□□□ -0.41
SYNE2-224ENST00000557024 ZNF408Q9H9D4 720 aa12.49□□□□□ -0.41
SYNE2-224ENST00000557024 ADARB2Q9NS39 739 aaKnown RBP12.49□□□□□ -0.41
SYNE2-224ENST00000557024 GPRC5DQ9NZD1 345 aa12.49□□□□□ -0.41
SYNE2-224ENST00000557024 SOX10P56693 466 aa12.48□□□□□ -0.41
SYNE2-224ENST00000557024 CC2D1BQ5T0F9 858 aaKnown RBP12.48□□□□□ -0.41
SYNE2-224ENST00000557024 PPIP5K2O43314 1243 aa12.47□□□□□ -0.41
SYNE2-224ENST00000557024 AOC3Q16853 763 aa12.47□□□□□ -0.41
SYNE2-224ENST00000557024 HHIPL1Q96JK4 782 aa12.47□□□□□ -0.41
SYNE2-224ENST00000557024 PHACTR3Q96KR7 559 aa12.47□□□□□ -0.41
SYNE2-224ENST00000557024 ZIC5Q96T25 663 aa12.47□□□□□ -0.41
SYNE2-224ENST00000557024 COL3A1P02461 1466 aaPredicted RBP12.46□□□□□ -0.41
SYNE2-224ENST00000557024 SIPA1L3O60292 1781 aaPredicted RBP12.46□□□□□ -0.41
SYNE2-224ENST00000557024 PPEF1O14829 653 aaPredicted RBP12.46□□□□□ -0.41
SYNE2-224ENST00000557024 PRR29P0C7W0 189 aa12.46□□□□□ -0.41
SYNE2-224ENST00000557024 HOXA10P31260 410 aaPredicted RBP12.46□□□□□ -0.41
SYNE2-224ENST00000557024 GMPSP49915 693 aaPredicted RBP12.46□□□□□ -0.41
SYNE2-224ENST00000557024 NYXQ9GZU5 481 aa12.46□□□□□ -0.41
SYNE2-224ENST00000557024 NPC1L1Q9UHC9 1359 aa12.45□□□□□ -0.42
SYNE2-224ENST00000557024 CXCL9Q07325 125 aa12.45□□□□□ -0.42
SYNE2-224ENST00000557024 NOGQ13253 232 aa12.45□□□□□ -0.42
SYNE2-224ENST00000557024 CNGB1Q14028 1251 aaPredicted RBP12.45□□□□□ -0.42
SYNE2-224ENST00000557024 GRIPAP1Q4V328 841 aa12.45□□□□□ -0.42
SYNE2-224ENST00000557024 MCM10Q7L590 875 aa12.45□□□□□ -0.42
SYNE2-224ENST00000557024 NGEFQ8N5V2 710 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms