RNA–Protein interactions for RNA: ENST00000556929.5

TMEM260-213, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-213ENST00000556929 PANK1Q8TE04 598 aa12.29□□□□□ -0.44
TMEM260-213ENST00000556929 SLC16A10Q8TF71 515 aa12.29□□□□□ -0.44
TMEM260-213ENST00000556929 CHMP4BQ9H444 224 aaKnown RBP12.29□□□□□ -0.44
TMEM260-213ENST00000556929 COL24A1Q17RW2 1714 aa12.28□□□□□ -0.44
TMEM260-213ENST00000556929 ATP5J2-PTCD1G3V325 749 aa12.28□□□□□ -0.44
TMEM260-213ENST00000556929 NEFLP07196 543 aa12.28□□□□□ -0.44
TMEM260-213ENST00000556929 GYS1P13807 737 aa12.28□□□□□ -0.44
TMEM260-213ENST00000556929 TRIM28Q13263 835 aaKnown RBP12.28□□□□□ -0.44
TMEM260-213ENST00000556929 PARP10Q53GL7 1025 aa12.28□□□□□ -0.44
TMEM260-213ENST00000556929 ITPRIPQ8IWB1 547 aa12.28□□□□□ -0.44
TMEM260-213ENST00000556929 ZNF34Q8IZ26 560 aa12.28□□□□□ -0.44
TMEM260-213ENST00000556929 CCDC191Q8NCU4 936 aa12.28□□□□□ -0.44
TMEM260-213ENST00000556929 ISCA1Q9BUE6 129 aa12.28□□□□□ -0.44
TMEM260-213ENST00000556929 BCL2L12Q9HB09 334 aa12.28□□□□□ -0.44
TMEM260-213ENST00000556929 DDX19BQ9UMR2 479 aa12.28□□□□□ -0.44
TMEM260-213ENST00000556929 NIP7Q9Y221 180 aaKnown RBP eCLIP12.28□□□□□ -0.44
TMEM260-213ENST00000556929 NEURL1BA8MQ27 555 aa12.27□□□□□ -0.45
TMEM260-213ENST00000556929 IGKV5-2P06315 115 aa12.27□□□□□ -0.45
TMEM260-213ENST00000556929 GPTP24298 496 aa12.27□□□□□ -0.45
TMEM260-213ENST00000556929 MVPQ14764 893 aaKnown RBP12.27□□□□□ -0.45
TMEM260-213ENST00000556929 R3HDM1Q15032 1099 aaKnown RBP12.27□□□□□ -0.45
TMEM260-213ENST00000556929 CWF19L2Q2TBE0 894 aaKnown RBP12.27□□□□□ -0.45
TMEM260-213ENST00000556929 C20orf194Q5TEA3 1177 aa12.27□□□□□ -0.45
TMEM260-213ENST00000556929 TBC1D9BQ66K14 1250 aa12.27□□□□□ -0.45
TMEM260-213ENST00000556929 PPP1R42Q7Z4L9 355 aa12.27□□□□□ -0.45
TMEM260-213ENST00000556929 SETDB2Q96T68 719 aa12.27□□□□□ -0.45
TMEM260-213ENST00000556929 CWC25Q9NXE8 425 aaPredicted RBP12.27□□□□□ -0.45
TMEM260-213ENST00000556929 COG6Q9Y2V7 657 aa12.27□□□□□ -0.45
TMEM260-213ENST00000556929 IBTKQ9P2D0 1353 aaPredicted RBP12.27□□□□□ -0.45
TMEM260-213ENST00000556929 RLBP1P12271 317 aa12.26□□□□□ -0.45
TMEM260-213ENST00000556929 FKBP8Q14318 412 aa12.26□□□□□ -0.45
TMEM260-213ENST00000556929 BICDL1Q6ZP65 573 aa12.26□□□□□ -0.45
TMEM260-213ENST00000556929 C9orf78Q9NZ63 289 aaPredicted RBP12.26□□□□□ -0.45
TMEM260-213ENST00000556929 PITPNM1O00562 1244 aa12.25□□□□□ -0.45
TMEM260-213ENST00000556929 GCKRQ14397 625 aa12.25□□□□□ -0.45
TMEM260-213ENST00000556929 NLRP10Q86W26 655 aa12.25□□□□□ -0.45
TMEM260-213ENST00000556929 NYXQ9GZU5 481 aa12.25□□□□□ -0.45
TMEM260-213ENST00000556929 HDAC5Q9UQL6 1122 aa12.25□□□□□ -0.45
TMEM260-213ENST00000556929 CARMIL3Q8ND23 1372 aa12.25□□□□□ -0.45
TMEM260-213ENST00000556929 LAMB2P55268 1798 aa12.25□□□□□ -0.45
TMEM260-213ENST00000556929 MYH3P11055 1940 aa12.25□□□□□ -0.45
TMEM260-213ENST00000556929 NPHP1O15259 732 aa12.24□□□□□ -0.45
TMEM260-213ENST00000556929 GNAI3P08754 354 aa12.24□□□□□ -0.45
TMEM260-213ENST00000556929 TM4SF1P30408 202 aa12.24□□□□□ -0.45
TMEM260-213ENST00000556929 NFIXQ14938 502 aa12.24□□□□□ -0.45
TMEM260-213ENST00000556929 UBN2Q6ZU65 1347 aa12.24□□□□□ -0.45
TMEM260-213ENST00000556929 CRBNQ96SW2 442 aa12.24□□□□□ -0.45
TMEM260-213ENST00000556929 UTP14AQ9BVJ6 771 aaKnown RBP12.24□□□□□ -0.45
TMEM260-213ENST00000556929 TRMT112Q9UI30 125 aaKnown RBP12.24□□□□□ -0.45
TMEM260-213ENST00000556929 PARP3Q9Y6F1 533 aa12.24□□□□□ -0.45
TMEM260-213ENST00000556929 NRXN2Q9P2S2 1712 aa12.23□□□□□ -0.45
TMEM260-213ENST00000556929 PSDA5PKW4 1024 aaPredicted RBP12.23□□□□□ -0.45
TMEM260-213ENST00000556929 FAM177BA6PVY3 158 aa12.23□□□□□ -0.45
TMEM260-213ENST00000556929 GRM8O00222 908 aa12.23□□□□□ -0.45
TMEM260-213ENST00000556929 PCCAP05165 728 aaPredicted RBP12.23□□□□□ -0.45
TMEM260-213ENST00000556929 HSP90B1P14625 803 aaKnown RBP12.23□□□□□ -0.45
TMEM260-213ENST00000556929 GTF2E1P29083 439 aaPredicted RBP12.23□□□□□ -0.45
TMEM260-213ENST00000556929 IRX6P78412 446 aaPredicted RBP12.23□□□□□ -0.45
TMEM260-213ENST00000556929 SUSD4Q5VX71 490 aa12.23□□□□□ -0.45
TMEM260-213ENST00000556929 TPTE2Q6XPS3 522 aa12.23□□□□□ -0.45
TMEM260-213ENST00000556929 NBPF5PQ86XG9 351 aaPredicted RBP12.23□□□□□ -0.45
TMEM260-213ENST00000556929 MTFR1LQ9H019 292 aa12.23□□□□□ -0.45
TMEM260-213ENST00000556929 SSUH2Q9Y2M2 353 aa12.23□□□□□ -0.45
TMEM260-213ENST00000556929 DDX60Q8IY21 1712 aaKnown RBP12.23□□□□□ -0.45
TMEM260-213ENST00000556929 UTYO14607 1347 aa12.22□□□□□ -0.45
TMEM260-213ENST00000556929 H7C1W4 665 aa12.22□□□□□ -0.45
TMEM260-213ENST00000556929 ZBTB7BO15156 539 aaPredicted RBP12.22□□□□□ -0.45
TMEM260-213ENST00000556929 SERPINB2P05120 415 aa12.22□□□□□ -0.45
TMEM260-213ENST00000556929 UBTFL1P0CB47 393 aaPredicted RBP12.22□□□□□ -0.45
TMEM260-213ENST00000556929 AAMPQ13685 434 aa12.22□□□□□ -0.45
TMEM260-213ENST00000556929 MSL1Q68DK7 614 aa12.22□□□□□ -0.45
TMEM260-213ENST00000556929 ZBTB38Q8NAP3 1195 aaPredicted RBP12.22□□□□□ -0.45
TMEM260-213ENST00000556929 PDGFDQ9GZP0 370 aaPredicted RBP12.22□□□□□ -0.45
TMEM260-213ENST00000556929 USP44Q9H0E7 712 aa12.22□□□□□ -0.45
TMEM260-213ENST00000556929 SH3TC1Q8TE82 1336 aa12.21□□□□□ -0.45
TMEM260-213ENST00000556929 CDHR2Q9BYE9 1310 aa12.21□□□□□ -0.45
TMEM260-213ENST00000556929 POLRMTO00411 1230 aaKnown RBP12.21□□□□□ -0.45
TMEM260-213ENST00000556929 NTSR2O95665 410 aa12.21□□□□□ -0.45
TMEM260-213ENST00000556929 MMP10P09238 476 aa12.21□□□□□ -0.45
TMEM260-213ENST00000556929 POLD1P28340 1107 aa12.21□□□□□ -0.45
TMEM260-213ENST00000556929 ST5P78524 1137 aa12.21□□□□□ -0.45
TMEM260-213ENST00000556929 UBE3BQ7Z3V4 1068 aa12.21□□□□□ -0.45
TMEM260-213ENST00000556929 MEIS3Q99687 375 aa12.21□□□□□ -0.45
TMEM260-213ENST00000556929 ZBTB7AO95365 584 aa12.2□□□□□ -0.46
TMEM260-213ENST00000556929 GNAI2P04899 355 aa12.2□□□□□ -0.46
TMEM260-213ENST00000556929 NBPF7P0C2Y1 421 aaPredicted RBP12.2□□□□□ -0.46
TMEM260-213ENST00000556929 RTL5Q5HYW3 569 aaPredicted RBP12.2□□□□□ -0.46
TMEM260-213ENST00000556929 CNBD1Q8NA66 436 aa12.2□□□□□ -0.46
TMEM260-213ENST00000556929 EXOC6Q8TAG9 804 aa12.2□□□□□ -0.46
TMEM260-213ENST00000556929 FAM89AQ96GI7 184 aa12.2□□□□□ -0.46
TMEM260-213ENST00000556929 IRS4O14654 1257 aaPredicted RBP12.19□□□□□ -0.46
TMEM260-213ENST00000556929 DDR1Q08345 913 aa12.19□□□□□ -0.46
TMEM260-213ENST00000556929 PRR5LQ6MZQ0 368 aa12.19□□□□□ -0.46
TMEM260-213ENST00000556929 NUTM1Q86Y26 1132 aa12.19□□□□□ -0.46
TMEM260-213ENST00000556929 JARID2Q92833 1246 aaPredicted RBP12.19□□□□□ -0.46
TMEM260-213ENST00000556929 ZBTB40Q9NUA8 1239 aa12.19□□□□□ -0.46
TMEM260-213ENST00000556929 PDE8AO60658 829 aa12.18□□□□□ -0.46
TMEM260-213ENST00000556929 CASP7P55210 303 aa12.18□□□□□ -0.46
TMEM260-213ENST00000556929 ERFEQ4G0M1 354 aa12.18□□□□□ -0.46
TMEM260-213ENST00000556929 SLC10A5Q5PT55 438 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms