RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	DZIP3	Q86Y13	1208 aa	Known RBP	11.71	□□□□□ -0.53
SYNE2-222	ENST00000556725	ABHD8	Q96I13	439 aa		11.71	□□□□□ -0.53
SYNE2-222	ENST00000556725	USP16	Q9Y5T5	823 aa		11.71	□□□□□ -0.53
SYNE2-222	ENST00000556725	ARFGEF2	Q9Y6D5	1785 aa		11.71	□□□□□ -0.54
SYNE2-222	ENST00000556725	PRAMEF22	A3QJZ6	481 aa		11.7	□□□□□ -0.54
SYNE2-222	ENST00000556725	TTLL13P	A6NNM8	815 aa		11.7	□□□□□ -0.54
SYNE2-222	ENST00000556725	EPHX2	P34913	555 aa		11.7	□□□□□ -0.54
SYNE2-222	ENST00000556725	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.7	□□□□□ -0.54
SYNE2-222	ENST00000556725	FMR1	Q06787	632 aa	Known RBP eCLIP	11.7	□□□□□ -0.54
SYNE2-222	ENST00000556725	TEF	Q10587	303 aa		11.7	□□□□□ -0.54
SYNE2-222	ENST00000556725	FAM161A	Q3B820	660 aa		11.7	□□□□□ -0.54
SYNE2-222	ENST00000556725	CCDC93	Q567U6	631 aa		11.7	□□□□□ -0.54
SYNE2-222	ENST00000556725	SOGA3	Q5TF21	947 aa		11.7	□□□□□ -0.54
SYNE2-222	ENST00000556725	CNTROB	Q8N137	903 aa		11.7	□□□□□ -0.54
SYNE2-222	ENST00000556725	HACL1	Q9UJ83	578 aa		11.7	□□□□□ -0.54
SYNE2-222	ENST00000556725	SIPA1L3	O60292	1781 aa	Predicted RBP	11.69	□□□□□ -0.54
SYNE2-222	ENST00000556725	ADAMTSL1	Q8N6G6	1762 aa		11.69	□□□□□ -0.54
SYNE2-222	ENST00000556725	RNF123	Q5XPI4	1314 aa		11.69	□□□□□ -0.54
SYNE2-222	ENST00000556725	WDR33	Q9C0J8	1336 aa	Known RBP	11.69	□□□□□ -0.54
SYNE2-222	ENST00000556725	RASSF10	A6NK89	507 aa		11.69	□□□□□ -0.54
SYNE2-222	ENST00000556725	GNAT3	A8MTJ3	354 aa		11.69	□□□□□ -0.54
SYNE2-222	ENST00000556725	NPR1	P16066	1061 aa		11.69	□□□□□ -0.54
SYNE2-222	ENST00000556725	NBPF5P	Q86XG9	351 aa	Predicted RBP	11.69	□□□□□ -0.54
SYNE2-222	ENST00000556725	FMNL2	Q96PY5	1086 aa		11.69	□□□□□ -0.54
SYNE2-222	ENST00000556725	KLRG2	A4D1S0	409 aa	Predicted RBP	11.68	□□□□□ -0.54
SYNE2-222	ENST00000556725	FAM177B	A6PVY3	158 aa		11.68	□□□□□ -0.54
SYNE2-222	ENST00000556725	IER5L	Q5T953	404 aa		11.68	□□□□□ -0.54
SYNE2-222	ENST00000556725	NPM2	Q86SE8	214 aa	Known RBP	11.68	□□□□□ -0.54
SYNE2-222	ENST00000556725	SYNE4	Q8N205	404 aa		11.68	□□□□□ -0.54
SYNE2-222	ENST00000556725	BCOR	Q6W2J9	1755 aa		11.68	□□□□□ -0.54
SYNE2-222	ENST00000556725	FZD9	O00144	591 aa		11.67	□□□□□ -0.54
SYNE2-222	ENST00000556725	SEC24B	O95487	1268 aa		11.67	□□□□□ -0.54
SYNE2-222	ENST00000556725	CC2D1B	Q5T0F9	858 aa	Known RBP	11.67	□□□□□ -0.54
SYNE2-222	ENST00000556725	BTBD11	A6QL63	1104 aa		11.66	□□□□□ -0.54
SYNE2-222	ENST00000556725	U2SURP	O15042	1029 aa	Known RBP	11.66	□□□□□ -0.54
SYNE2-222	ENST00000556725	PER1	O15534	1290 aa	Predicted RBP	11.66	□□□□□ -0.54
SYNE2-222	ENST00000556725	IARS	P41252	1262 aa	Known RBP	11.66	□□□□□ -0.54
SYNE2-222	ENST00000556725	MAP2K1	Q02750	393 aa	Predicted RBP	11.66	□□□□□ -0.54
SYNE2-222	ENST00000556725	TRIM26	Q12899	539 aa	Predicted RBP	11.66	□□□□□ -0.54
SYNE2-222	ENST00000556725	CLEC4G	Q6UXB4	293 aa		11.66	□□□□□ -0.54
SYNE2-222	ENST00000556725	PNMA8A	Q86V59	439 aa	Predicted RBP	11.66	□□□□□ -0.54
SYNE2-222	ENST00000556725	DDX21	Q9NR30	783 aa	Known RBP eCLIP	11.66	□□□□□ -0.54
SYNE2-222	ENST00000556725	ABT1	Q9ULW3	272 aa	Known RBP	11.66	□□□□□ -0.54
SYNE2-222	ENST00000556725	CCDC85C	A6NKD9	419 aa		11.65	□□□□□ -0.54
SYNE2-222	ENST00000556725	NBPF26	B4DH59	902 aa		11.65	□□□□□ -0.54
SYNE2-222	ENST00000556725	CNGB1	Q14028	1251 aa	Predicted RBP	11.65	□□□□□ -0.54
SYNE2-222	ENST00000556725	HLF	Q16534	295 aa		11.65	□□□□□ -0.54
SYNE2-222	ENST00000556725	NBPF10	Q6P3W6	841 aa	Known RBP	11.65	□□□□□ -0.54
SYNE2-222	ENST00000556725	SLC51A	Q86UW1	340 aa		11.65	□□□□□ -0.54
SYNE2-222	ENST00000556725	RTKN2	Q8IZC4	609 aa		11.65	□□□□□ -0.54
SYNE2-222	ENST00000556725	NBPF15	Q8N660	670 aa		11.65	□□□□□ -0.54
SYNE2-222	ENST00000556725	GAS2L2	Q8NHY3	880 aa		11.65	□□□□□ -0.54
SYNE2-222	ENST00000556725	PHACTR3	Q96KR7	559 aa		11.65	□□□□□ -0.54
SYNE2-222	ENST00000556725	NIP7	Q9Y221	180 aa	Known RBP eCLIP	11.65	□□□□□ -0.54
SYNE2-222	ENST00000556725	GJA3	Q9Y6H8	435 aa		11.65	□□□□□ -0.54
SYNE2-222	ENST00000556725	CEMIP	Q8WUJ3	1361 aa		11.65	□□□□□ -0.55
SYNE2-222	ENST00000556725	EPS15	P42566	896 aa		11.64	□□□□□ -0.55
SYNE2-222	ENST00000556725	GRM1	Q13255	1194 aa		11.64	□□□□□ -0.55
SYNE2-222	ENST00000556725	CYP4F22	Q6NT55	531 aa		11.64	□□□□□ -0.55
SYNE2-222	ENST00000556725	TPTE2	Q6XPS3	522 aa		11.64	□□□□□ -0.55
SYNE2-222	ENST00000556725	GPC2	Q8N158	579 aa		11.64	□□□□□ -0.55
SYNE2-222	ENST00000556725	PCGF6	Q9BYE7	350 aa		11.64	□□□□□ -0.55
SYNE2-222	ENST00000556725	TSKS	Q9UJT2	592 aa		11.64	□□□□□ -0.55
SYNE2-222	ENST00000556725	COL4A5	P29400	1685 aa		11.64	□□□□□ -0.55
SYNE2-222	ENST00000556725	COL3A1	P02461	1466 aa	Predicted RBP	11.63	□□□□□ -0.55
SYNE2-222	ENST00000556725	LTBP1	Q14766	1721 aa		11.63	□□□□□ -0.55
SYNE2-222	ENST00000556725	TRAF5	O00463	557 aa		11.63	□□□□□ -0.55
SYNE2-222	ENST00000556725	ALDH1B1	P30837	517 aa		11.63	□□□□□ -0.55
SYNE2-222	ENST00000556725	CST9	Q5W186	159 aa		11.63	□□□□□ -0.55
SYNE2-222	ENST00000556725	CAPNS2	Q96L46	248 aa		11.63	□□□□□ -0.55
SYNE2-222	ENST00000556725	GPR101	Q96P66	508 aa	Predicted RBP	11.63	□□□□□ -0.55
SYNE2-222	ENST00000556725	KIF7	Q2M1P5	1343 aa		11.62	□□□□□ -0.55
SYNE2-222	ENST00000556725	TNRC18	O15417	2968 aa	Predicted RBP	11.62	□□□□□ -0.55
SYNE2-222	ENST00000556725	SNED1	Q8TER0	1413 aa		11.62	□□□□□ -0.55
SYNE2-222	ENST00000556725	ST18	O60284	1047 aa		11.62	□□□□□ -0.55
SYNE2-222	ENST00000556725	AOC2	O75106	756 aa		11.62	□□□□□ -0.55
SYNE2-222	ENST00000556725	RGS19	P49795	217 aa		11.62	□□□□□ -0.55
SYNE2-222	ENST00000556725	SCNN1D	P51172	638 aa		11.62	□□□□□ -0.55
SYNE2-222	ENST00000556725	MLLT1	Q03111	559 aa	Predicted RBP	11.62	□□□□□ -0.55
SYNE2-222	ENST00000556725	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.62	□□□□□ -0.55
SYNE2-222	ENST00000556725	RASEF	Q8IZ41	740 aa		11.62	□□□□□ -0.55
SYNE2-222	ENST00000556725	ZNF652	Q9Y2D9	606 aa		11.62	□□□□□ -0.55
SYNE2-222	ENST00000556725	SNRPA1	P09661	255 aa	Known RBP	11.61	□□□□□ -0.55
SYNE2-222	ENST00000556725	EIF6	P56537	245 aa	Known RBP	11.61	□□□□□ -0.55
SYNE2-222	ENST00000556725	MCM10	Q7L590	875 aa		11.61	□□□□□ -0.55
SYNE2-222	ENST00000556725	NUTM1	Q86Y26	1132 aa		11.61	□□□□□ -0.55
SYNE2-222	ENST00000556725	JDP2	Q8WYK2	163 aa		11.61	□□□□□ -0.55
SYNE2-222	ENST00000556725	PSMD1	Q99460	953 aa		11.61	□□□□□ -0.55
SYNE2-222	ENST00000556725	TRPM7	Q96QT4	1865 aa		11.6	□□□□□ -0.55
SYNE2-222	ENST00000556725	ABCC12	Q96J65	1359 aa		11.6	□□□□□ -0.55
SYNE2-222	ENST00000556725	TCERG1	O14776	1098 aa	Known RBP	11.6	□□□□□ -0.55
SYNE2-222	ENST00000556725	GTF2E1	P29083	439 aa	Predicted RBP	11.6	□□□□□ -0.55
SYNE2-222	ENST00000556725	PRKAR2B	P31323	418 aa		11.6	□□□□□ -0.55
SYNE2-222	ENST00000556725	DCTN1	Q14203	1278 aa		11.6	□□□□□ -0.55
SYNE2-222	ENST00000556725	NGEF	Q8N5V2	710 aa		11.6	□□□□□ -0.55
SYNE2-222	ENST00000556725	RSPH6A	Q9H0K4	717 aa		11.6	□□□□□ -0.55
SYNE2-222	ENST00000556725	TRIM35	Q9UPQ4	493 aa		11.6	□□□□□ -0.55
SYNE2-222	ENST00000556725	CLSPN	Q9HAW4	1339 aa		11.6	□□□□□ -0.55
SYNE2-222	ENST00000556725	LMOD1	P29536	600 aa	Predicted RBP	11.59	□□□□□ -0.55
SYNE2-222	ENST00000556725	ECE1	P42892	770 aa		11.59	□□□□□ -0.55

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