RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 TBC1D9BQ66K14 1250 aa13.6□□□□□ -0.23
SCFD1-220ENST00000556486 SLC52A2Q9HAB3 445 aa13.6□□□□□ -0.23
SCFD1-220ENST00000556486 SLC34A2O95436 690 aa13.59□□□□□ -0.23
SCFD1-220ENST00000556486 PDE4AP27815 886 aa13.59□□□□□ -0.23
SCFD1-220ENST00000556486 IL13P35225 146 aa13.59□□□□□ -0.23
SCFD1-220ENST00000556486 AIDAQ96BJ3 306 aa13.59□□□□□ -0.23
SCFD1-220ENST00000556486 LARP6Q9BRS8 491 aaKnown RBP13.59□□□□□ -0.23
SCFD1-220ENST00000556486 KNSTRNQ9Y448 316 aa13.59□□□□□ -0.23
SCFD1-220ENST00000556486 CTCFP49711 727 aaPredicted RBP13.58□□□□□ -0.24
SCFD1-220ENST00000556486 EAPPQ56P03 285 aaPredicted RBP13.58□□□□□ -0.24
SCFD1-220ENST00000556486 TAOK3Q9H2K8 898 aa13.58□□□□□ -0.24
SCFD1-220ENST00000556486 COLQQ9Y215 455 aaPredicted RBP13.58□□□□□ -0.24
SCFD1-220ENST00000556486 SCN7AQ01118 1682 aa13.58□□□□□ -0.24
SCFD1-220ENST00000556486 PRR5LQ6MZQ0 368 aa13.57□□□□□ -0.24
SCFD1-220ENST00000556486 PRDM10Q9NQV6 1147 aa13.57□□□□□ -0.24
SCFD1-220ENST00000556486 TBC1D2BQ9UPU7 963 aa13.57□□□□□ -0.24
SCFD1-220ENST00000556486 PASKQ96RG2 1323 aa13.57□□□□□ -0.24
SCFD1-220ENST00000556486 MRC1P22897 1456 aa13.56□□□□□ -0.24
SCFD1-220ENST00000556486 UBR2Q8IWV8 1755 aa13.56□□□□□ -0.24
SCFD1-220ENST00000556486 RNMTO43148 476 aaKnown RBP13.56□□□□□ -0.24
SCFD1-220ENST00000556486 HMOX1P09601 288 aa13.56□□□□□ -0.24
SCFD1-220ENST00000556486 MFSD10Q14728 455 aa13.56□□□□□ -0.24
SCFD1-220ENST00000556486 AKAP4Q5JQC9 854 aa13.56□□□□□ -0.24
SCFD1-220ENST00000556486 CCER1Q8TC90 406 aaPredicted RBP13.56□□□□□ -0.24
SCFD1-220ENST00000556486 ABHD8Q96I13 439 aa13.56□□□□□ -0.24
SCFD1-220ENST00000556486 ARIH1Q9Y4X5 557 aaPredicted RBP13.56□□□□□ -0.24
SCFD1-220ENST00000556486 KIF7Q2M1P5 1343 aa13.56□□□□□ -0.24
SCFD1-220ENST00000556486 NPHP1O15259 732 aa13.55□□□□□ -0.24
SCFD1-220ENST00000556486 PER1O15534 1290 aaPredicted RBP13.55□□□□□ -0.24
SCFD1-220ENST00000556486 PRPF40BQ6NWY9 871 aaKnown RBP13.55□□□□□ -0.24
SCFD1-220ENST00000556486 OLFM4Q6UX06 510 aa13.55□□□□□ -0.24
SCFD1-220ENST00000556486 ZNF541Q9H0D2 1346 aa13.55□□□□□ -0.24
SCFD1-220ENST00000556486 SCN4AP35499 1836 aa13.55□□□□□ -0.24
SCFD1-220ENST00000556486 ARFGEF2Q9Y6D5 1785 aa13.54□□□□□ -0.24
SCFD1-220ENST00000556486 TMEM88BA6NKF7 163 aa13.54□□□□□ -0.24
SCFD1-220ENST00000556486 HSPA8P11142 646 aaKnown RBP13.54□□□□□ -0.24
SCFD1-220ENST00000556486 PDE6BP35913 854 aa13.54□□□□□ -0.24
SCFD1-220ENST00000556486 MAP1SQ66K74 1059 aaPredicted RBP13.54□□□□□ -0.24
SCFD1-220ENST00000556486 LDHDQ86WU2 507 aa13.54□□□□□ -0.24
SCFD1-220ENST00000556486 BRIP1Q9BX63 1249 aa13.54□□□□□ -0.24
SCFD1-220ENST00000556486 TAF1DQ9H5J8 278 aaPredicted RBP13.54□□□□□ -0.24
SCFD1-220ENST00000556486 WBP1LQ9NX94 342 aa13.54□□□□□ -0.24
SCFD1-220ENST00000556486 NPC1L1Q9UHC9 1359 aa13.54□□□□□ -0.24
SCFD1-220ENST00000556486 SEC24BO95487 1268 aa13.53□□□□□ -0.24
SCFD1-220ENST00000556486 ITGBL1O95965 494 aaPredicted RBP13.53□□□□□ -0.24
SCFD1-220ENST00000556486 EIF5P55010 431 aaKnown RBP13.53□□□□□ -0.24
SCFD1-220ENST00000556486 IRX5P78411 483 aaPredicted RBP13.53□□□□□ -0.24
SCFD1-220ENST00000556486 GRM1Q13255 1194 aa13.53□□□□□ -0.24
SCFD1-220ENST00000556486 CCDC85CA6NKD9 419 aa13.52□□□□□ -0.25
SCFD1-220ENST00000556486 PIP4K2AP48426 406 aaPredicted RBP13.52□□□□□ -0.25
SCFD1-220ENST00000556486 FMR1Q06787 632 aaKnown RBP eCLIP13.52□□□□□ -0.25
SCFD1-220ENST00000556486 MTHFSDQ2M296 383 aaKnown RBP13.52□□□□□ -0.25
SCFD1-220ENST00000556486 CNBD1Q8NA66 436 aa13.52□□□□□ -0.25
SCFD1-220ENST00000556486 ZNF277Q9NRM2 450 aaPredicted RBP13.52□□□□□ -0.25
SCFD1-220ENST00000556486 RNF123Q5XPI4 1314 aa13.52□□□□□ -0.25
SCFD1-220ENST00000556486 ADAMTSL1Q8N6G6 1762 aa13.51□□□□□ -0.25
SCFD1-220ENST00000556486 LTBP3Q9NS15 1303 aa13.51□□□□□ -0.25
SCFD1-220ENST00000556486 IQCA1LA6NCM1 817 aa13.51□□□□□ -0.25
SCFD1-220ENST00000556486 TTC5Q8N0Z6 440 aa13.51□□□□□ -0.25
SCFD1-220ENST00000556486 CRISPLD2Q9H0B8 497 aa13.51□□□□□ -0.25
SCFD1-220ENST00000556486 TSKSQ9UJT2 592 aa13.51□□□□□ -0.25
SCFD1-220ENST00000556486 ABT1Q9ULW3 272 aaKnown RBP13.51□□□□□ -0.25
SCFD1-220ENST00000556486 BCORQ6W2J9 1755 aa13.5□□□□□ -0.25
SCFD1-220ENST00000556486 STARD3NLO95772 234 aa13.5□□□□□ -0.25
SCFD1-220ENST00000556486 A1BGP04217 495 aa13.5□□□□□ -0.25
SCFD1-220ENST00000556486 DEFB115Q30KQ5 88 aa13.5□□□□□ -0.25
SCFD1-220ENST00000556486 CNKSR1Q969H4 720 aa13.5□□□□□ -0.25
SCFD1-220ENST00000556486 OTUD5Q96G74 571 aa13.5□□□□□ -0.25
SCFD1-220ENST00000556486 DDX27Q96GQ7 796 aaKnown RBP13.5□□□□□ -0.25
SCFD1-220ENST00000556486 ZNF496Q96IT1 587 aaPredicted RBP13.5□□□□□ -0.25
SCFD1-220ENST00000556486 WDR33Q9C0J8 1336 aaKnown RBP13.49□□□□□ -0.25
SCFD1-220ENST00000556486 A0A087WZG4 1122 aa13.49□□□□□ -0.25
SCFD1-220ENST00000556486 FAM177BA6PVY3 158 aa13.49□□□□□ -0.25
SCFD1-220ENST00000556486 SRGNP10124 158 aa13.49□□□□□ -0.25
SCFD1-220ENST00000556486 EPHX2P34913 555 aa13.49□□□□□ -0.25
SCFD1-220ENST00000556486 ST5P78524 1137 aa13.49□□□□□ -0.25
SCFD1-220ENST00000556486 L3MBTL3Q96JM7 780 aaPredicted RBP13.49□□□□□ -0.25
SCFD1-220ENST00000556486 SETDB2Q96T68 719 aa13.49□□□□□ -0.25
SCFD1-220ENST00000556486 HACL1Q9UJ83 578 aa13.49□□□□□ -0.25
SCFD1-220ENST00000556486 COL3A1P02461 1466 aaPredicted RBP13.48□□□□□ -0.25
SCFD1-220ENST00000556486 DIAPH1O60610 1272 aaKnown RBP13.48□□□□□ -0.25
SCFD1-220ENST00000556486 CAMTA2O94983 1202 aa13.48□□□□□ -0.25
SCFD1-220ENST00000556486 STYK1Q6J9G0 422 aa13.48□□□□□ -0.25
SCFD1-220ENST00000556486 CNTROBQ8N137 903 aa13.48□□□□□ -0.25
SCFD1-220ENST00000556486 MASTLQ96GX5 879 aa13.48□□□□□ -0.25
SCFD1-220ENST00000556486 TNRC18O15417 2968 aaPredicted RBP13.47□□□□□ -0.25
SCFD1-220ENST00000556486 HEG1Q9ULI3 1381 aa13.47□□□□□ -0.25
SCFD1-220ENST00000556486 RASSF10A6NK89 507 aa13.47□□□□□ -0.25
SCFD1-220ENST00000556486 MLLT1Q03111 559 aaPredicted RBP13.47□□□□□ -0.25
SCFD1-220ENST00000556486 CAMK2BQ13554 666 aa13.47□□□□□ -0.25
SCFD1-220ENST00000556486 CCDC93Q567U6 631 aa13.47□□□□□ -0.25
SCFD1-220ENST00000556486 MS4A4AQ96JQ5 239 aa13.47□□□□□ -0.25
SCFD1-220ENST00000556486 OCEL1Q9H607 264 aa13.47□□□□□ -0.25
SCFD1-220ENST00000556486 SIPA1L3O60292 1781 aaPredicted RBP13.47□□□□□ -0.25
SCFD1-220ENST00000556486 KCNQ3O43525 872 aa13.46□□□□□ -0.25
SCFD1-220ENST00000556486 GOLGA2Q08379 1002 aa13.46□□□□□ -0.25
SCFD1-220ENST00000556486 MKRN3Q13064 507 aaKnown RBP13.46□□□□□ -0.25
SCFD1-220ENST00000556486 CNGB1Q14028 1251 aaPredicted RBP13.46□□□□□ -0.25
SCFD1-220ENST00000556486 SLC51AQ86UW1 340 aa13.46□□□□□ -0.25
SCFD1-220ENST00000556486 NBPF5PQ86XG9 351 aaPredicted RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms