RNA–Protein interactions for RNA: ENST00000556342.1

SYNE2-221, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 5

Gene SYNE2, Length 572 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-221ENST00000556342 U2SURPO15042 1029 aaKnown RBP14.43□□□□□ -0.1
SYNE2-221ENST00000556342 ERFEQ4G0M1 354 aa14.43□□□□□ -0.1
SYNE2-221ENST00000556342 C3orf67Q6ZVT6 689 aa14.43□□□□□ -0.1
SYNE2-221ENST00000556342 TNS4Q8IZW8 715 aa14.43□□□□□ -0.1
SYNE2-221ENST00000556342 LTBP3Q9NS15 1303 aa14.42□□□□□ -0.1
SYNE2-221ENST00000556342 HSPA1AP0DMV8 641 aaKnown RBP14.42□□□□□ -0.1
SYNE2-221ENST00000556342 HSPA1BP0DMV9 641 aaKnown RBP14.42□□□□□ -0.1
SYNE2-221ENST00000556342 SLAIN1Q8ND83 568 aa14.42□□□□□ -0.1
SYNE2-221ENST00000556342 CCER1Q8TC90 406 aaPredicted RBP14.42□□□□□ -0.1
SYNE2-221ENST00000556342 FMNL2Q96PY5 1086 aa14.42□□□□□ -0.1
SYNE2-221ENST00000556342 ANKRD31Q8N7Z5 1873 aa14.42□□□□□ -0.1
SYNE2-221ENST00000556342 CAMTA2O94983 1202 aa14.41□□□□□ -0.1
SYNE2-221ENST00000556342 A1BGP04217 495 aa14.41□□□□□ -0.1
SYNE2-221ENST00000556342 CNBD1Q8NA66 436 aa14.41□□□□□ -0.1
SYNE2-221ENST00000556342 TMEM121BQ9BXQ6 578 aaPredicted RBP14.41□□□□□ -0.1
SYNE2-221ENST00000556342 TAOK3Q9H2K8 898 aa14.41□□□□□ -0.1
SYNE2-221ENST00000556342 COL11A2P13942 1736 aaPredicted RBP14.41□□□□□ -0.1
SYNE2-221ENST00000556342 CEMIPQ8WUJ3 1361 aa14.4□□□□□ -0.1
SYNE2-221ENST00000556342 NPC1L1Q9UHC9 1359 aa14.4□□□□□ -0.1
SYNE2-221ENST00000556342 NPHP1O15259 732 aa14.4□□□□□ -0.1
SYNE2-221ENST00000556342 STYK1Q6J9G0 422 aa14.4□□□□□ -0.1
SYNE2-221ENST00000556342 NPM2Q86SE8 214 aaKnown RBP14.4□□□□□ -0.1
SYNE2-221ENST00000556342 CNKSR1Q969H4 720 aa14.4□□□□□ -0.1
SYNE2-221ENST00000556342 SETDB2Q96T68 719 aa14.4□□□□□ -0.1
SYNE2-221ENST00000556342 KCNQ3O43525 872 aa14.39□□□□□ -0.11
SYNE2-221ENST00000556342 SRGNP10124 158 aa14.39□□□□□ -0.11
SYNE2-221ENST00000556342 ST5P78524 1137 aa14.39□□□□□ -0.11
SYNE2-221ENST00000556342 PRPF40BQ6NWY9 871 aaKnown RBP14.39□□□□□ -0.11
SYNE2-221ENST00000556342 DZIP3Q86Y13 1208 aaKnown RBP14.39□□□□□ -0.11
SYNE2-221ENST00000556342 CCDC88AQ3V6T2 1871 aa14.38□□□□□ -0.11
SYNE2-221ENST00000556342 SIPA1L3O60292 1781 aaPredicted RBP14.38□□□□□ -0.11
SYNE2-221ENST00000556342 DDNO94850 711 aaPredicted RBP14.38□□□□□ -0.11
SYNE2-221ENST00000556342 SOGA3Q5TF21 947 aa14.38□□□□□ -0.11
SYNE2-221ENST00000556342 MASTLQ96GX5 879 aa14.38□□□□□ -0.11
SYNE2-221ENST00000556342 FER1L6Q2WGJ9 1857 aa14.38□□□□□ -0.11
SYNE2-221ENST00000556342 BTBD11A6QL63 1104 aa14.37□□□□□ -0.11
SYNE2-221ENST00000556342 CNGB1Q14028 1251 aaPredicted RBP14.37□□□□□ -0.11
SYNE2-221ENST00000556342 PHACTR3Q96KR7 559 aa14.37□□□□□ -0.11
SYNE2-221ENST00000556342 PRKAR2BP31323 418 aa14.36□□□□□ -0.11
SYNE2-221ENST00000556342 USP16Q9Y5T5 823 aa14.36□□□□□ -0.11
SYNE2-221ENST00000556342 PIP4K2AP48426 406 aaPredicted RBP14.35□□□□□ -0.11
SYNE2-221ENST00000556342 CLEC4GQ6UXB4 293 aa14.35□□□□□ -0.11
SYNE2-221ENST00000556342 NBPF5PQ86XG9 351 aaPredicted RBP14.35□□□□□ -0.11
SYNE2-221ENST00000556342 C7orf43Q8WVR3 580 aa14.35□□□□□ -0.11
SYNE2-221ENST00000556342 RSPH6AQ9H0K4 717 aa14.35□□□□□ -0.11
SYNE2-221ENST00000556342 MKRN1Q9UHC7 482 aaKnown RBP14.35□□□□□ -0.11
SYNE2-221ENST00000556342 SLX4Q8IY92 1834 aa14.35□□□□□ -0.11
SYNE2-221ENST00000556342 DICER1Q9UPY3 1922 aaKnown RBP14.35□□□□□ -0.11
SYNE2-221ENST00000556342 PRAMEF22A3QJZ6 481 aa14.34□□□□□ -0.11
SYNE2-221ENST00000556342 IQCA1LA6NCM1 817 aa14.34□□□□□ -0.11
SYNE2-221ENST00000556342 CCDC93Q567U6 631 aa14.34□□□□□ -0.11
SYNE2-221ENST00000556342 MICALL2Q8IY33 904 aa14.34□□□□□ -0.11
SYNE2-221ENST00000556342 ZNF652Q9Y2D9 606 aa14.34□□□□□ -0.11
SYNE2-221ENST00000556342 BCORQ6W2J9 1755 aa14.34□□□□□ -0.11
SYNE2-221ENST00000556342 SNRPA1P09661 255 aaKnown RBP14.33□□□□□ -0.12
SYNE2-221ENST00000556342 NPR1P16066 1061 aa14.33□□□□□ -0.12
SYNE2-221ENST00000556342 LDHDQ86WU2 507 aa14.33□□□□□ -0.12
SYNE2-221ENST00000556342 CFAP53Q96M91 514 aa14.33□□□□□ -0.12
SYNE2-221ENST00000556342 RTN4Q9NQC3 1192 aaKnown RBP14.33□□□□□ -0.12
SYNE2-221ENST00000556342 KLRG2A4D1S0 409 aaPredicted RBP14.32□□□□□ -0.12
SYNE2-221ENST00000556342 TAF1DQ9H5J8 278 aaPredicted RBP14.32□□□□□ -0.12
SYNE2-221ENST00000556342 PASKQ96RG2 1323 aa14.32□□□□□ -0.12
SYNE2-221ENST00000556342 CNTNAP1P78357 1384 aa14.32□□□□□ -0.12
SYNE2-221ENST00000556342 FKBP4Q02790 459 aaKnown RBP eCLIP14.31□□□□□ -0.12
SYNE2-221ENST00000556342 TPTE2Q6XPS3 522 aa14.31□□□□□ -0.12
SYNE2-221ENST00000556342 MCM10Q7L590 875 aa14.31□□□□□ -0.12
SYNE2-221ENST00000556342 RTF1Q92541 710 aaKnown RBP14.31□□□□□ -0.12
SYNE2-221ENST00000556342 NIP7Q9Y221 180 aaKnown RBP eCLIP14.31□□□□□ -0.12
SYNE2-221ENST00000556342 NUDCQ9Y266 331 aa14.31□□□□□ -0.12
SYNE2-221ENST00000556342 ARFGEF2Q9Y6D5 1785 aa14.31□□□□□ -0.12
SYNE2-221ENST00000556342 NBPF26B4DH59 902 aa14.3□□□□□ -0.12
SYNE2-221ENST00000556342 NBPF10Q6P3W6 841 aaKnown RBP14.3□□□□□ -0.12
SYNE2-221ENST00000556342 NBPF15Q8N660 670 aa14.3□□□□□ -0.12
SYNE2-221ENST00000556342 ZNF277Q9NRM2 450 aaPredicted RBP14.3□□□□□ -0.12
SYNE2-221ENST00000556342 ZNF541Q9H0D2 1346 aa14.3□□□□□ -0.12
SYNE2-221ENST00000556342 U2AF1L5P0DN76 240 aaPredicted RBP14.29□□□□□ -0.12
SYNE2-221ENST00000556342 U2AF1Q01081 240 aaKnown RBP eCLIP14.29□□□□□ -0.12
SYNE2-221ENST00000556342 OLFM4Q6UX06 510 aa14.29□□□□□ -0.12
SYNE2-221ENST00000556342 RTKN2Q8IZC4 609 aa14.29□□□□□ -0.12
SYNE2-221ENST00000556342 CACNA1SQ13698 1873 aa14.29□□□□□ -0.12
SYNE2-221ENST00000556342 FAM177BA6PVY3 158 aa14.28□□□□□ -0.12
SYNE2-221ENST00000556342 FOXN1O15353 648 aa14.28□□□□□ -0.12
SYNE2-221ENST00000556342 ITGBL1O95965 494 aaPredicted RBP14.28□□□□□ -0.12
SYNE2-221ENST00000556342 DCTN1Q14203 1278 aa14.28□□□□□ -0.12
SYNE2-221ENST00000556342 EAPPQ56P03 285 aaPredicted RBP14.28□□□□□ -0.12
SYNE2-221ENST00000556342 HACL1Q9UJ83 578 aa14.28□□□□□ -0.12
SYNE2-221ENST00000556342 TMEM88BA6NKF7 163 aa14.27□□□□□ -0.13
SYNE2-221ENST00000556342 HTATSF1O43719 755 aaKnown RBP14.27□□□□□ -0.13
SYNE2-221ENST00000556342 EPHX2P34913 555 aa14.27□□□□□ -0.13
SYNE2-221ENST00000556342 HLFQ16534 295 aa14.27□□□□□ -0.13
SYNE2-221ENST00000556342 SCN4AP35499 1836 aa14.27□□□□□ -0.13
SYNE2-221ENST00000556342 FZD9O00144 591 aa14.26□□□□□ -0.13
SYNE2-221ENST00000556342 GTF2E1P29083 439 aaPredicted RBP14.26□□□□□ -0.13
SYNE2-221ENST00000556342 ALDH1B1P30837 517 aa14.26□□□□□ -0.13
SYNE2-221ENST00000556342 IARSP41252 1262 aaKnown RBP14.26□□□□□ -0.13
SYNE2-221ENST00000556342 VEGFBP49765 207 aa14.26□□□□□ -0.13
SYNE2-221ENST00000556342 SNED1Q8TER0 1413 aa14.25□□□□□ -0.13
SYNE2-221ENST00000556342 RNF123Q5XPI4 1314 aa14.25□□□□□ -0.13
SYNE2-221ENST00000556342 PPP2R1AP30153 589 aa14.25□□□□□ -0.13
SYNE2-221ENST00000556342 TAF7Q15545 349 aaPredicted RBP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms