RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 GAS2L2Q8NHY3 880 aa13.03□□□□□ -0.32
SCFD1-215ENST00000555259 CEMIPQ8WUJ3 1361 aa13.03□□□□□ -0.32
SCFD1-215ENST00000555259 PRAMEF22A3QJZ6 481 aa13.03□□□□□ -0.32
SCFD1-215ENST00000555259 BTBD11A6QL63 1104 aa13.03□□□□□ -0.32
SCFD1-215ENST00000555259 RGL2O15211 777 aa13.03□□□□□ -0.32
SCFD1-215ENST00000555259 CRY2Q49AN0 593 aa13.03□□□□□ -0.32
SCFD1-215ENST00000555259 LARGE2Q8N3Y3 721 aa13.03□□□□□ -0.32
SCFD1-215ENST00000555259 HHIPL1Q96JK4 782 aa13.03□□□□□ -0.32
SCFD1-215ENST00000555259 CELF2O95319 508 aaKnown RBP13.02□□□□□ -0.33
SCFD1-215ENST00000555259 TIMELESSQ9UNS1 1208 aa13.02□□□□□ -0.33
SCFD1-215ENST00000555259 HSPA5P11021 654 aaKnown RBP13.01□□□□□ -0.33
SCFD1-215ENST00000555259 GTF2E1P29083 439 aaPredicted RBP13.01□□□□□ -0.33
SCFD1-215ENST00000555259 EIF4G2P78344 907 aaKnown RBP eCLIP13.01□□□□□ -0.33
SCFD1-215ENST00000555259 CIAPIN1Q6FI81 312 aa13.01□□□□□ -0.33
SCFD1-215ENST00000555259 ADARB2Q9NS39 739 aaKnown RBP13.01□□□□□ -0.33
SCFD1-215ENST00000555259 ABCC12Q96J65 1359 aa13□□□□□ -0.33
SCFD1-215ENST00000555259 NBPF26B4DH59 902 aa13□□□□□ -0.33
SCFD1-215ENST00000555259 HLFQ16534 295 aa13□□□□□ -0.33
SCFD1-215ENST00000555259 GRIPAP1Q4V328 841 aa13□□□□□ -0.33
SCFD1-215ENST00000555259 NBPF10Q6P3W6 841 aaKnown RBP13□□□□□ -0.33
SCFD1-215ENST00000555259 NBPF15Q8N660 670 aa13□□□□□ -0.33
SCFD1-215ENST00000555259 GPRC5DQ9NZD1 345 aa13□□□□□ -0.33
SCFD1-215ENST00000555259 SNRPA1P09661 255 aaKnown RBP12.99□□□□□ -0.33
SCFD1-215ENST00000555259 SLC51AQ86UW1 340 aa12.99□□□□□ -0.33
SCFD1-215ENST00000555259 NIM1KQ8IY84 436 aa12.99□□□□□ -0.33
SCFD1-215ENST00000555259 GLIS2Q9BZE0 524 aaPredicted RBP12.99□□□□□ -0.33
SCFD1-215ENST00000555259 HOXA10P31260 410 aaPredicted RBP12.98□□□□□ -0.33
SCFD1-215ENST00000555259 NUTM1Q86Y26 1132 aa12.98□□□□□ -0.33
SCFD1-215ENST00000555259 U2SURPO15042 1029 aaKnown RBP12.98□□□□□ -0.33
SCFD1-215ENST00000555259 SOX10P56693 466 aa12.98□□□□□ -0.33
SCFD1-215ENST00000555259 NOGQ13253 232 aa12.98□□□□□ -0.33
SCFD1-215ENST00000555259 RPGRQ92834 1020 aaKnown RBP12.98□□□□□ -0.33
SCFD1-215ENST00000555259 ZIC5Q96T25 663 aa12.98□□□□□ -0.33
SCFD1-215ENST00000555259 NYXQ9GZU5 481 aa12.98□□□□□ -0.33
SCFD1-215ENST00000555259 ZNF408Q9H9D4 720 aa12.98□□□□□ -0.33
SCFD1-215ENST00000555259 PGAP2Q9UHJ9 254 aa12.98□□□□□ -0.33
SCFD1-215ENST00000555259 COL3A1P02461 1466 aaPredicted RBP12.97□□□□□ -0.33
SCFD1-215ENST00000555259 KIF7Q2M1P5 1343 aa12.97□□□□□ -0.33
SCFD1-215ENST00000555259 PPIP5K2O43314 1243 aa12.97□□□□□ -0.33
SCFD1-215ENST00000555259 PRPF38BQ5VTL8 546 aaKnown RBP12.97□□□□□ -0.33
SCFD1-215ENST00000555259 RIC1Q4ADV7 1423 aa12.97□□□□□ -0.33
SCFD1-215ENST00000555259 NPC1L1Q9UHC9 1359 aa12.96□□□□□ -0.33
SCFD1-215ENST00000555259 TCERG1O14776 1098 aaKnown RBP12.96□□□□□ -0.33
SCFD1-215ENST00000555259 PPEF1O14829 653 aaPredicted RBP12.96□□□□□ -0.33
SCFD1-215ENST00000555259 AOC3Q16853 763 aa12.96□□□□□ -0.33
SCFD1-215ENST00000555259 GMPSP49915 693 aaPredicted RBP12.95□□□□□ -0.34
SCFD1-215ENST00000555259 CXCL9Q07325 125 aa12.95□□□□□ -0.34
SCFD1-215ENST00000555259 ZC3H15Q8WU90 426 aaKnown RBP12.95□□□□□ -0.34
SCFD1-215ENST00000555259 PHACTR3Q96KR7 559 aa12.95□□□□□ -0.34
SCFD1-215ENST00000555259 CRAMP1Q96RY5 1269 aa12.95□□□□□ -0.34
SCFD1-215ENST00000555259 HIRAP54198 1017 aaPredicted RBP12.94□□□□□ -0.34
SCFD1-215ENST00000555259 HUNKP57058 714 aa12.94□□□□□ -0.34
SCFD1-215ENST00000555259 CDC37L1Q7L3B6 337 aa12.94□□□□□ -0.34
SCFD1-215ENST00000555259 RBM17Q96I25 401 aaKnown RBP12.94□□□□□ -0.34
SCFD1-215ENST00000555259 VPS33BQ9H267 617 aa12.94□□□□□ -0.34
SCFD1-215ENST00000555259 ZNRF3Q9ULT6 936 aa12.94□□□□□ -0.34
SCFD1-215ENST00000555259 CDHR2Q9BYE9 1310 aa12.94□□□□□ -0.34
SCFD1-215ENST00000555259 CC2D1BQ5T0F9 858 aaKnown RBP12.94□□□□□ -0.34
SCFD1-215ENST00000555259 SAGE1Q9NXZ1 904 aa12.94□□□□□ -0.34
SCFD1-215ENST00000555259 ERVV-1B6SEH8 477 aa12.93□□□□□ -0.34
SCFD1-215ENST00000555259 TRPM4Q8TD43 1214 aa12.93□□□□□ -0.34
SCFD1-215ENST00000555259 IBTKQ9P2D0 1353 aaPredicted RBP12.93□□□□□ -0.34
SCFD1-215ENST00000555259 UBN2Q6ZU65 1347 aa12.92□□□□□ -0.34
SCFD1-215ENST00000555259 FAM155AB1AL88 458 aaPredicted RBP12.92□□□□□ -0.34
SCFD1-215ENST00000555259 PER1O15534 1290 aaPredicted RBP12.92□□□□□ -0.34
SCFD1-215ENST00000555259 PRKAR2BP31323 418 aa12.92□□□□□ -0.34
SCFD1-215ENST00000555259 C3orf67Q6ZVT6 689 aa12.92□□□□□ -0.34
SCFD1-215ENST00000555259 MCM10Q7L590 875 aa12.92□□□□□ -0.34
SCFD1-215ENST00000555259 TMX4Q9H1E5 349 aaPredicted RBP12.92□□□□□ -0.34
SCFD1-215ENST00000555259 ATP6V0A2Q9Y487 856 aa12.92□□□□□ -0.34
SCFD1-215ENST00000555259 MAP3K15Q6ZN16 1313 aa12.92□□□□□ -0.34
SCFD1-215ENST00000555259 GPTP24298 496 aa12.91□□□□□ -0.34
SCFD1-215ENST00000555259 SUSD4Q5VX71 490 aa12.91□□□□□ -0.34
SCFD1-215ENST00000555259 RGMBQ6NW40 437 aa12.91□□□□□ -0.34
SCFD1-215ENST00000555259 USP48Q86UV5 1035 aa12.91□□□□□ -0.34
SCFD1-215ENST00000555259 NGEFQ8N5V2 710 aa12.91□□□□□ -0.34
SCFD1-215ENST00000555259 BCL2L13Q9BXK5 485 aa12.91□□□□□ -0.34
SCFD1-215ENST00000555259 RTFDC1Q9BY42 306 aaPredicted RBP12.91□□□□□ -0.34
SCFD1-215ENST00000555259 NUP98P52948 1817 aa12.91□□□□□ -0.34
SCFD1-215ENST00000555259 MKI67P46013 3256 aaKnown RBP12.91□□□□□ -0.34
SCFD1-215ENST00000555259 RAD17O75943 681 aa12.9□□□□□ -0.34
SCFD1-215ENST00000555259 DLK2Q6UY11 383 aa12.9□□□□□ -0.34
SCFD1-215ENST00000555259 SUPT20HQ8NEM7 779 aa12.9□□□□□ -0.34
SCFD1-215ENST00000555259 RTF1Q92541 710 aaKnown RBP12.9□□□□□ -0.34
SCFD1-215ENST00000555259 RSPH6AQ9H0K4 717 aa12.9□□□□□ -0.34
SCFD1-215ENST00000555259 SHTN1A0MZ66 631 aa12.9□□□□□ -0.35
SCFD1-215ENST00000555259 TRPA1O75762 1119 aa12.9□□□□□ -0.35
SCFD1-215ENST00000555259 NTSR2O95665 410 aa12.9□□□□□ -0.35
SCFD1-215ENST00000555259 KIF23Q02241 960 aaPredicted RBP12.9□□□□□ -0.35
SCFD1-215ENST00000555259 TNIP1Q15025 636 aa12.9□□□□□ -0.35
SCFD1-215ENST00000555259 TTLL7Q6ZT98 887 aa12.9□□□□□ -0.35
SCFD1-215ENST00000555259 RNF186Q9NXI6 227 aa12.9□□□□□ -0.35
SCFD1-215ENST00000555259 CNOT7Q9UIV1 285 aaKnown RBP12.9□□□□□ -0.35
SCFD1-215ENST00000555259 KIAA2012Q0VF49 1180 aa12.89□□□□□ -0.35
SCFD1-215ENST00000555259 DCTN1Q14203 1278 aa12.89□□□□□ -0.35
SCFD1-215ENST00000555259 DPP8Q6V1X1 898 aaPredicted RBP12.89□□□□□ -0.35
SCFD1-215ENST00000555259 KIF6Q6ZMV9 814 aa12.89□□□□□ -0.35
SCFD1-215ENST00000555259 CCDC102AQ96A19 550 aa12.89□□□□□ -0.35
SCFD1-215ENST00000555259 LAMB4A4D0S4 1761 aa12.89□□□□□ -0.35
SCFD1-215ENST00000555259 H7C1D1 291 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms