RNA–Protein interactions for RNA: ENST00000554081.5

PRPF39-205, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 3,223 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-205ENST00000554081 DLK2Q6UY11 383 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 ANKRD13DQ6ZTN6 518 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 PPP1R42Q7Z4L9 355 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 NIM1KQ8IY84 436 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 MIER1Q8N108 512 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 PI4KAP1Q8N8J0 262 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 ABCF2Q9UG63 623 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 PTPRZ1P23471 2315 aaPredicted RBP3.17□□□□□ -1.9
PRPF39-205ENST00000554081 SLIT2O94813 1529 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 RGPD8O14715 1765 aaPredicted RBP3.17□□□□□ -1.9
PRPF39-205ENST00000554081 KDM5AP29375 1690 aaKnown RBP3.17□□□□□ -1.9
PRPF39-205ENST00000554081 TAF5LO75529 589 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 SSFA2P28290 1259 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 EXOSC9Q06265 439 aaKnown RBP3.17□□□□□ -1.9
PRPF39-205ENST00000554081 AOC3Q16853 763 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 SLC51AQ86UW1 340 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 KIAA0825Q8IV33 1275 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 AIDAQ96BJ3 306 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 RUNDC1Q96C34 613 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 TEX13AQ9BXU3 409 aaPredicted RBP3.17□□□□□ -1.9
PRPF39-205ENST00000554081 CHMP4AQ9BY43 222 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 KDM2BQ8NHM5 1336 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 UFL1O94874 794 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 VEGFAP15692 232 aaPredicted RBP3.17□□□□□ -1.9
PRPF39-205ENST00000554081 CDK11BP21127 795 aaKnown RBP3.17□□□□□ -1.9
PRPF39-205ENST00000554081 DDR1Q08345 913 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 TWISTNBQ3B726 338 aaPredicted RBP3.17□□□□□ -1.9
PRPF39-205ENST00000554081 OGFOD1Q8N543 542 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 CNKSR1Q969H4 720 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 KIF12Q96FN5 646 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 SGIP1Q9BQI5 828 aa3.17□□□□□ -1.9
PRPF39-205ENST00000554081 UTP14AQ9BVJ6 771 aaKnown RBP3.17□□□□□ -1.9
PRPF39-205ENST00000554081 PRKRIP1Q9H875 184 aaPredicted RBP3.17□□□□□ -1.9
PRPF39-205ENST00000554081 BIN2Q9UBW5 565 aaPredicted RBP3.17□□□□□ -1.9
PRPF39-205ENST00000554081 CHD2O14647 1828 aaKnown RBP3.17□□□□□ -1.9
PRPF39-205ENST00000554081 MEGF6O75095 1541 aa3.16□□□□□ -1.9
PRPF39-205ENST00000554081 IRS4O14654 1257 aaPredicted RBP3.16□□□□□ -1.9
PRPF39-205ENST00000554081 CYP19A1P11511 503 aaPredicted RBP3.16□□□□□ -1.9
PRPF39-205ENST00000554081 MNX1P50219 401 aaPredicted RBP3.16□□□□□ -1.9
PRPF39-205ENST00000554081 RALBP1Q15311 655 aa3.16□□□□□ -1.9
PRPF39-205ENST00000554081 WASHC4Q2M389 1173 aa3.16□□□□□ -1.9
PRPF39-205ENST00000554081 PRR5LQ6MZQ0 368 aa3.16□□□□□ -1.9
PRPF39-205ENST00000554081 MPNDQ8N594 471 aa3.16□□□□□ -1.9
PRPF39-205ENST00000554081 TSPYL6Q8N831 410 aa3.16□□□□□ -1.9
PRPF39-205ENST00000554081 CDCA7LQ96GN5 454 aa3.16□□□□□ -1.9
PRPF39-205ENST00000554081 CWC22Q9HCG8 908 aaKnown RBP3.16□□□□□ -1.9
PRPF39-205ENST00000554081 SEC31BQ9NQW1 1179 aa3.16□□□□□ -1.9
PRPF39-205ENST00000554081 MAP3K2Q9Y2U5 619 aa3.16□□□□□ -1.9
PRPF39-205ENST00000554081 COL16A1Q07092 1604 aaPredicted RBP3.16□□□□□ -1.9
PRPF39-205ENST00000554081 CPDO75976 1380 aa3.16□□□□□ -1.9
PRPF39-205ENST00000554081 CLRN2A0PK11 232 aa3.16□□□□□ -1.9
PRPF39-205ENST00000554081 H7C1D1 291 aa3.16□□□□□ -1.9
PRPF39-205ENST00000554081 BRD2P25440 801 aaKnown RBP3.16□□□□□ -1.9
PRPF39-205ENST00000554081 IGHMBP2P38935 993 aaKnown RBP3.16□□□□□ -1.9
PRPF39-205ENST00000554081 SCNN1DP51172 638 aa3.16□□□□□ -1.9
PRPF39-205ENST00000554081 CCDC57Q2TAC2 916 aa3.16□□□□□ -1.9
PRPF39-205ENST00000554081 CDC42BPGQ6DT37 1551 aa3.16□□□□□ -1.9
PRPF39-205ENST00000554081 SAMD7Q7Z3H4 446 aa3.16□□□□□ -1.9
PRPF39-205ENST00000554081 CCAR1Q8IX12 1150 aaKnown RBP3.16□□□□□ -1.9
PRPF39-205ENST00000554081 MARVELD3Q96A59 401 aa3.16□□□□□ -1.9
PRPF39-205ENST00000554081 NARFQ9UHQ1 456 aa3.16□□□□□ -1.9
PRPF39-205ENST00000554081 ZNF142P52746 1687 aaPredicted RBP3.16□□□□□ -1.9
PRPF39-205ENST00000554081 NALCNQ8IZF0 1738 aa3.16□□□□□ -1.9
PRPF39-205ENST00000554081 HSP90B1P14625 803 aaKnown RBP3.15□□□□□ -1.9
PRPF39-205ENST00000554081 HMGB2P26583 209 aaKnown RBP3.15□□□□□ -1.9
PRPF39-205ENST00000554081 GNAI1P63096 354 aa3.15□□□□□ -1.9
PRPF39-205ENST00000554081 CCDC30Q5VVM6 783 aa3.15□□□□□ -1.9
PRPF39-205ENST00000554081 SUSD4Q5VX71 490 aa3.15□□□□□ -1.9
PRPF39-205ENST00000554081 LDHAL6AQ6ZMR3 332 aa3.15□□□□□ -1.9
PRPF39-205ENST00000554081 C8orf58Q8NAV2 365 aa3.15□□□□□ -1.9
PRPF39-205ENST00000554081 KLHDC4Q8TBB5 520 aa3.15□□□□□ -1.9
PRPF39-205ENST00000554081 ZNF594Q96JF6 807 aaPredicted RBP3.15□□□□□ -1.9
PRPF39-205ENST00000554081 C1orf115Q9H7X2 142 aa3.15□□□□□ -1.9
PRPF39-205ENST00000554081 EIF2AK3Q9NZJ5 1116 aaKnown RBP3.15□□□□□ -1.9
PRPF39-205ENST00000554081 HDAC9Q9UKV0 1011 aa3.15□□□□□ -1.9
PRPF39-205ENST00000554081 FZD1Q9UP38 647 aa3.15□□□□□ -1.9
PRPF39-205ENST00000554081 MAP3K5Q99683 1374 aa3.15□□□□□ -1.9
PRPF39-205ENST00000554081 TRAF5O00463 557 aa3.15□□□□□ -1.91
PRPF39-205ENST00000554081 LMNB1P20700 586 aa3.15□□□□□ -1.91
PRPF39-205ENST00000554081 ALDH1B1P30837 517 aa3.15□□□□□ -1.91
PRPF39-205ENST00000554081 CHMP4BP1P59074 171 aa3.15□□□□□ -1.91
PRPF39-205ENST00000554081 ATP2B2Q01814 1243 aa3.15□□□□□ -1.91
PRPF39-205ENST00000554081 CCDC93Q567U6 631 aa3.15□□□□□ -1.91
PRPF39-205ENST00000554081 ANKRD18AQ8IVF6 992 aa3.15□□□□□ -1.91
PRPF39-205ENST00000554081 ITPRIPQ8IWB1 547 aa3.15□□□□□ -1.91
PRPF39-205ENST00000554081 TNS4Q8IZW8 715 aa3.15□□□□□ -1.91
PRPF39-205ENST00000554081 RBM17Q96I25 401 aaKnown RBP3.15□□□□□ -1.91
PRPF39-205ENST00000554081 MXD3Q9BW11 206 aa3.15□□□□□ -1.91
PRPF39-205ENST00000554081 RSPH6AQ9H0K4 717 aa3.15□□□□□ -1.91
PRPF39-205ENST00000554081 DBF4Q9UBU7 674 aaPredicted RBP3.15□□□□□ -1.91
PRPF39-205ENST00000554081 CD2APQ9Y5K6 639 aa3.15□□□□□ -1.91
PRPF39-205ENST00000554081 CUL9Q8IWT3 2517 aa3.15□□□□□ -1.91
PRPF39-205ENST00000554081 SH3TC1Q8TE82 1336 aa3.15□□□□□ -1.91
PRPF39-205ENST00000554081 MYBBP1AQ9BQG0 1328 aaKnown RBP3.15□□□□□ -1.91
PRPF39-205ENST00000554081 COL15A1P39059 1388 aa3.15□□□□□ -1.91
PRPF39-205ENST00000554081 CELF2O95319 508 aaKnown RBP3.15□□□□□ -1.91
PRPF39-205ENST00000554081 EPS15P42566 896 aa3.15□□□□□ -1.91
PRPF39-205ENST00000554081 GTF2IP78347 998 aa3.15□□□□□ -1.91
PRPF39-205ENST00000554081 CALD1Q05682 793 aaKnown RBP3.15□□□□□ -1.91
PRPF39-205ENST00000554081 TCP10Q12799 353 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms