RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 AACSQ86V21 672 aa15.64■□□□□ 0.09
VIPAS39-206ENST00000553888 SYNE4Q8N205 404 aa15.64■□□□□ 0.09
VIPAS39-206ENST00000553888 CCDC8Q9H0W5 538 aaPredicted RBP15.64■□□□□ 0.09
VIPAS39-206ENST00000553888 HDAC5Q9UQL6 1122 aa15.64■□□□□ 0.09
VIPAS39-206ENST00000553888 H7C1W4 665 aa15.63■□□□□ 0.09
VIPAS39-206ENST00000553888 GPTP24298 496 aa15.63■□□□□ 0.09
VIPAS39-206ENST00000553888 FOXO4P98177 505 aa15.63■□□□□ 0.09
VIPAS39-206ENST00000553888 IL25Q9H293 177 aa15.63■□□□□ 0.09
VIPAS39-206ENST00000553888 SLKQ9H2G2 1235 aaPredicted RBP15.63■□□□□ 0.09
VIPAS39-206ENST00000553888 TAOK2Q9UL54 1235 aa15.63■□□□□ 0.09
VIPAS39-206ENST00000553888 MYH14Q7Z406 1995 aaKnown RBP15.63■□□□□ 0.09
VIPAS39-206ENST00000553888 KCNQ4P56696 695 aa15.63■□□□□ 0.09
VIPAS39-206ENST00000553888 EAF2Q96CJ1 260 aaPredicted RBP15.63■□□□□ 0.09
VIPAS39-206ENST00000553888 EP400Q96L91 3159 aa15.63■□□□□ 0.09
VIPAS39-206ENST00000553888 PTPN12Q05209 780 aaKnown RBP15.62■□□□□ 0.09
VIPAS39-206ENST00000553888 CLASRPQ8N2M8 674 aaKnown RBP15.62■□□□□ 0.09
VIPAS39-206ENST00000553888 CERKQ8TCT0 537 aa15.62■□□□□ 0.09
VIPAS39-206ENST00000553888 TEX13AQ9BXU3 409 aaPredicted RBP15.62■□□□□ 0.09
VIPAS39-206ENST00000553888 TBC1D2BQ9UPU7 963 aa15.62■□□□□ 0.09
VIPAS39-206ENST00000553888 NUP98P52948 1817 aa15.62■□□□□ 0.09
VIPAS39-206ENST00000553888 CD2BP2O95400 341 aaKnown RBP15.62■□□□□ 0.09
VIPAS39-206ENST00000553888 RABL6Q3YEC7 729 aaPredicted RBP15.62■□□□□ 0.09
VIPAS39-206ENST00000553888 CCDC85AQ96PX6 553 aaPredicted RBP15.62■□□□□ 0.09
VIPAS39-206ENST00000553888 KCNA4P22459 653 aa15.61■□□□□ 0.09
VIPAS39-206ENST00000553888 HSPA1LP34931 641 aa15.61■□□□□ 0.09
VIPAS39-206ENST00000553888 TCIRG1Q13488 830 aa15.61■□□□□ 0.09
VIPAS39-206ENST00000553888 BECN1Q14457 450 aa15.61■□□□□ 0.09
VIPAS39-206ENST00000553888 KIF6Q6ZMV9 814 aa15.61■□□□□ 0.09
VIPAS39-206ENST00000553888 USP26Q9BXU7 913 aa15.61■□□□□ 0.09
VIPAS39-206ENST00000553888 FAM89AQ96GI7 184 aa15.61■□□□□ 0.09
VIPAS39-206ENST00000553888 CHMLP26374 656 aa15.61■□□□□ 0.09
VIPAS39-206ENST00000553888 ATP6V1AP38606 617 aa15.61■□□□□ 0.09
VIPAS39-206ENST00000553888 ITPK1Q13572 414 aa15.61■□□□□ 0.09
VIPAS39-206ENST00000553888 ZNF594Q96JF6 807 aaPredicted RBP15.61■□□□□ 0.09
VIPAS39-206ENST00000553888 ISCA1Q9BUE6 129 aa15.61■□□□□ 0.09
VIPAS39-206ENST00000553888 USP21Q9UK80 565 aa15.61■□□□□ 0.09
VIPAS39-206ENST00000553888 IFIT2P09913 472 aaKnown RBP15.6■□□□□ 0.09
VIPAS39-206ENST00000553888 VPS72Q15906 364 aa15.6■□□□□ 0.09
VIPAS39-206ENST00000553888 CASC1Q6TDU7 716 aa15.6■□□□□ 0.09
VIPAS39-206ENST00000553888 CCDC191Q8NCU4 936 aa15.6■□□□□ 0.09
VIPAS39-206ENST00000553888 MAP3K15Q6ZN16 1313 aa15.6■□□□□ 0.09
VIPAS39-206ENST00000553888 TFCP2Q12800 502 aa15.59■□□□□ 0.09
VIPAS39-206ENST00000553888 ERC1Q8IUD2 1116 aa15.59■□□□□ 0.09
VIPAS39-206ENST00000553888 LOC102724428A0A0B4J2F2 783 aa15.59■□□□□ 0.09
VIPAS39-206ENST00000553888 ERC2O15083 957 aa15.59■□□□□ 0.09
VIPAS39-206ENST00000553888 SIK1P57059 783 aa15.59■□□□□ 0.09
VIPAS39-206ENST00000553888 ESYT1Q9BSJ8 1104 aa15.59■□□□□ 0.09
VIPAS39-206ENST00000553888 AOX1Q06278 1338 aa15.59■□□□□ 0.09
VIPAS39-206ENST00000553888 ANKRD36CQ5JPF3 1778 aa15.58■□□□□ 0.09
VIPAS39-206ENST00000553888 FNBP4Q8N3X1 1017 aaPredicted RBP15.58■□□□□ 0.09
VIPAS39-206ENST00000553888 COPRSQ9NQ92 184 aa15.58■□□□□ 0.09
VIPAS39-206ENST00000553888 INTS5Q6P9B9 1019 aaKnown RBP15.58■□□□□ 0.08
VIPAS39-206ENST00000553888 SMIM5Q71RC9 77 aa15.58■□□□□ 0.08
VIPAS39-206ENST00000553888 PALLDQ8WX93 1383 aa15.58■□□□□ 0.08
VIPAS39-206ENST00000553888 CRKLP46109 303 aaKnown RBP15.57■□□□□ 0.08
VIPAS39-206ENST00000553888 GIGYF2Q6Y7W6 1299 aaKnown RBP15.57■□□□□ 0.08
VIPAS39-206ENST00000553888 ECHDC1Q9NTX5 307 aa15.57■□□□□ 0.08
VIPAS39-206ENST00000553888 DZIP3Q86Y13 1208 aaKnown RBP15.57■□□□□ 0.08
VIPAS39-206ENST00000553888 NDUFB9Q9Y6M9 179 aa15.57■□□□□ 0.08
VIPAS39-206ENST00000553888 COL15A1P39059 1388 aa15.57■□□□□ 0.08
VIPAS39-206ENST00000553888 USP42Q9H9J4 1324 aaKnown RBP15.57■□□□□ 0.08
VIPAS39-206ENST00000553888 LRRC24Q50LG9 513 aa15.56■□□□□ 0.08
VIPAS39-206ENST00000553888 MEX3CQ5U5Q3 659 aaKnown RBP15.56■□□□□ 0.08
VIPAS39-206ENST00000553888 PUS3Q9BZE2 481 aaKnown RBP15.56■□□□□ 0.08
VIPAS39-206ENST00000553888 TTC41PQ6P2S7 1318 aa15.55■□□□□ 0.08
VIPAS39-206ENST00000553888 FAM177BA6PVY3 158 aa15.55■□□□□ 0.08
VIPAS39-206ENST00000553888 EDC3Q96F86 508 aaKnown RBP15.55■□□□□ 0.08
VIPAS39-206ENST00000553888 BOLA2Q9H3K6 86 aa15.55■□□□□ 0.08
VIPAS39-206ENST00000553888 ANO2Q9NQ90 1003 aa15.55■□□□□ 0.08
VIPAS39-206ENST00000553888 A0A0U1RQG5 324 aaPredicted RBP15.55■□□□□ 0.08
VIPAS39-206ENST00000553888 GLRX3O76003 335 aaKnown RBP15.55■□□□□ 0.08
VIPAS39-206ENST00000553888 NLRP10Q86W26 655 aa15.55■□□□□ 0.08
VIPAS39-206ENST00000553888 DBNLQ9UJU6 430 aaKnown RBP15.55■□□□□ 0.08
VIPAS39-206ENST00000553888 SPATA31A6Q5VVP1 1343 aa15.54■□□□□ 0.08
VIPAS39-206ENST00000553888 UBN2Q6ZU65 1347 aa15.54■□□□□ 0.08
VIPAS39-206ENST00000553888 ATG9AQ7Z3C6 839 aa15.54■□□□□ 0.08
VIPAS39-206ENST00000553888 HSCBQ8IWL3 235 aa15.54■□□□□ 0.08
VIPAS39-206ENST00000553888 CCDC87Q9NVE4 849 aa15.54■□□□□ 0.08
VIPAS39-206ENST00000553888 REC8O95072 547 aa15.54■□□□□ 0.08
VIPAS39-206ENST00000553888 IL6STP40189 918 aaPredicted RBP15.54■□□□□ 0.08
VIPAS39-206ENST00000553888 TNNI3KQ59H18 835 aa15.54■□□□□ 0.08
VIPAS39-206ENST00000553888 CWC27Q6UX04 472 aaKnown RBP15.54■□□□□ 0.08
VIPAS39-206ENST00000553888 CNTROBQ8N137 903 aa15.54■□□□□ 0.08
VIPAS39-206ENST00000553888 FOXD4L1Q9NU39 408 aa15.54■□□□□ 0.08
VIPAS39-206ENST00000553888 FPGT-TNNI3KV9GXZ4 949 aa15.54■□□□□ 0.08
VIPAS39-206ENST00000553888 EIF5P55010 431 aaKnown RBP15.54■□□□□ 0.08
VIPAS39-206ENST00000553888 PALD1Q9ULE6 856 aa15.54■□□□□ 0.08
VIPAS39-206ENST00000553888 DBNDD2Q9BQY9 259 aa15.53■□□□□ 0.08
VIPAS39-206ENST00000553888 ANTXR1Q9H6X2 564 aa15.53■□□□□ 0.08
VIPAS39-206ENST00000553888 MYH3P11055 1940 aa15.53■□□□□ 0.08
VIPAS39-206ENST00000553888 AFF2P51816 1311 aa15.53■□□□□ 0.08
VIPAS39-206ENST00000553888 PCCAP05165 728 aaPredicted RBP15.53■□□□□ 0.08
VIPAS39-206ENST00000553888 ZBTB38Q8NAP3 1195 aaPredicted RBP15.53■□□□□ 0.08
VIPAS39-206ENST00000553888 COL5A3P25940 1745 aaPredicted RBP15.53■□□□□ 0.08
VIPAS39-206ENST00000553888 BTAF1O14981 1849 aa15.53■□□□□ 0.08
VIPAS39-206ENST00000553888 TRIM28Q13263 835 aaKnown RBP15.52■□□□□ 0.08
VIPAS39-206ENST00000553888 GPATCH3Q96I76 525 aa15.52■□□□□ 0.08
VIPAS39-206ENST00000553888 LINC00116Q8NCU8 138 aa15.52■□□□□ 0.07
VIPAS39-206ENST00000553888 THSD7AQ9UPZ6 1657 aa15.52■□□□□ 0.07
VIPAS39-206ENST00000553888 TIMM10P62072 90 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms