RNA–Protein interactions for RNA: ENST00000553882.1

ACTN1-211, Transcript of actinin alpha 1, humanhuman

TSL 2

Gene ACTN1, Length 2,636 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-211ENST00000553882 NECTIN1Q15223 517 aa17.47■□□□□ 0.39
ACTN1-211ENST00000553882 EDC3Q96F86 508 aaKnown RBP17.47■□□□□ 0.39
ACTN1-211ENST00000553882 ZNF496Q96IT1 587 aaPredicted RBP17.47■□□□□ 0.39
ACTN1-211ENST00000553882 NEURL1BA8MQ27 555 aa17.47■□□□□ 0.39
ACTN1-211ENST00000553882 F13A1P00488 732 aa17.47■□□□□ 0.39
ACTN1-211ENST00000553882 VPS53Q5VIR6 699 aa17.47■□□□□ 0.39
ACTN1-211ENST00000553882 CREB3L3Q68CJ9 461 aa17.47■□□□□ 0.39
ACTN1-211ENST00000553882 CABLES1Q8TDN4 633 aa17.47■□□□□ 0.39
ACTN1-211ENST00000553882 ZSWIM6Q9HCJ5 1215 aa17.47■□□□□ 0.39
ACTN1-211ENST00000553882 UTYO14607 1347 aa17.47■□□□□ 0.39
ACTN1-211ENST00000553882 ME3Q16798 604 aa17.46■□□□□ 0.39
ACTN1-211ENST00000553882 LARP1Q6PKG0 1096 aaKnown RBP17.46■□□□□ 0.39
ACTN1-211ENST00000553882 KDM6AO15550 1401 aaPredicted RBP17.46■□□□□ 0.39
ACTN1-211ENST00000553882 CSB-PGBD3P0DP91 1061 aa17.46■□□□□ 0.39
ACTN1-211ENST00000553882 GCKRQ14397 625 aa17.46■□□□□ 0.39
ACTN1-211ENST00000553882 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.46■□□□□ 0.39
ACTN1-211ENST00000553882 USP16Q9Y5T5 823 aa17.46■□□□□ 0.39
ACTN1-211ENST00000553882 VPS37CA5D8V6 355 aaPredicted RBP17.45■□□□□ 0.38
ACTN1-211ENST00000553882 ST3GAL1Q11201 340 aa17.45■□□□□ 0.38
ACTN1-211ENST00000553882 NOL7Q9UMY1 257 aaKnown RBP17.45■□□□□ 0.38
ACTN1-211ENST00000553882 TAF6LQ9Y6J9 622 aa17.45■□□□□ 0.38
ACTN1-211ENST00000553882 NDUFB9Q9Y6M9 179 aa17.45■□□□□ 0.38
ACTN1-211ENST00000553882 PHKG2P15735 406 aa17.45■□□□□ 0.38
ACTN1-211ENST00000553882 SIPA1L3O60292 1781 aaPredicted RBP17.44■□□□□ 0.38
ACTN1-211ENST00000553882 ZNF142P52746 1687 aaPredicted RBP17.44■□□□□ 0.38
ACTN1-211ENST00000553882 PHF14O94880 888 aa17.44■□□□□ 0.38
ACTN1-211ENST00000553882 DNM1Q05193 864 aaKnown RBP17.44■□□□□ 0.38
ACTN1-211ENST00000553882 CHRNA2Q15822 529 aa17.44■□□□□ 0.38
ACTN1-211ENST00000553882 TPCN1Q9ULQ1 816 aa17.44■□□□□ 0.38
ACTN1-211ENST00000553882 TATP17735 454 aaPredicted RBP17.44■□□□□ 0.38
ACTN1-211ENST00000553882 HS1BP3Q53T59 392 aa17.44■□□□□ 0.38
ACTN1-211ENST00000553882 MAP4K1Q92918 833 aa17.44■□□□□ 0.38
ACTN1-211ENST00000553882 C1orf167Q5SNV9 1468 aa17.43■□□□□ 0.38
ACTN1-211ENST00000553882 ATP5J2-PTCD1G3V325 749 aa17.43■□□□□ 0.38
ACTN1-211ENST00000553882 SLC27A2O14975 620 aa17.43■□□□□ 0.38
ACTN1-211ENST00000553882 PTCD1O75127 700 aaKnown RBP17.43■□□□□ 0.38
ACTN1-211ENST00000553882 ZNF589Q86UQ0 364 aaPredicted RBP17.43■□□□□ 0.38
ACTN1-211ENST00000553882 MPNDQ8N594 471 aa17.43■□□□□ 0.38
ACTN1-211ENST00000553882 TMEM87AQ8NBN3 555 aa17.43■□□□□ 0.38
ACTN1-211ENST00000553882 TM6SF1Q9BZW5 370 aa17.43■□□□□ 0.38
ACTN1-211ENST00000553882 ANKRD13DQ6ZTN6 518 aa17.43■□□□□ 0.38
ACTN1-211ENST00000553882 MTMR6Q9Y217 621 aa17.43■□□□□ 0.38
ACTN1-211ENST00000553882 UBE3BQ7Z3V4 1068 aa17.42■□□□□ 0.38
ACTN1-211ENST00000553882 TTC5Q8N0Z6 440 aa17.42■□□□□ 0.38
ACTN1-211ENST00000553882 METTL22Q9BUU2 404 aaPredicted RBP17.42■□□□□ 0.38
ACTN1-211ENST00000553882 TRPM3Q9HCF6 1732 aaPredicted RBP17.42■□□□□ 0.38
ACTN1-211ENST00000553882 SH2B1Q9NRF2 756 aaPredicted RBP17.42■□□□□ 0.38
ACTN1-211ENST00000553882 CCDC9Q9Y3X0 531 aaKnown RBP17.42■□□□□ 0.38
ACTN1-211ENST00000553882 C5P01031 1676 aa17.42■□□□□ 0.38
ACTN1-211ENST00000553882 MEGF6O75095 1541 aa17.42■□□□□ 0.38
ACTN1-211ENST00000553882 CHGBP05060 677 aa17.42■□□□□ 0.38
ACTN1-211ENST00000553882 UBE2HP62256 183 aa17.42■□□□□ 0.38
ACTN1-211ENST00000553882 CCDC183Q5T5S1 534 aa17.42■□□□□ 0.38
ACTN1-211ENST00000553882 KCNB2Q92953 911 aa17.42■□□□□ 0.38
ACTN1-211ENST00000553882 C19orf44Q9H6X5 657 aa17.42■□□□□ 0.38
ACTN1-211ENST00000553882 ATP6V1DQ9Y5K8 247 aa17.42■□□□□ 0.38
ACTN1-211ENST00000553882 HIP1O00291 1037 aa17.41■□□□□ 0.38
ACTN1-211ENST00000553882 FERMT3Q86UX7 667 aa17.41■□□□□ 0.38
ACTN1-211ENST00000553882 ZSCAN31Q96LW9 406 aaPredicted RBP17.41■□□□□ 0.38
ACTN1-211ENST00000553882 ZKSCAN5Q9Y2L8 839 aa17.41■□□□□ 0.38
ACTN1-211ENST00000553882 CAMTA1Q9Y6Y1 1673 aa17.41■□□□□ 0.38
ACTN1-211ENST00000553882 PTMAP06454 111 aaKnown RBP17.4■□□□□ 0.38
ACTN1-211ENST00000553882 HCLS1P14317 486 aaPredicted RBP17.4■□□□□ 0.38
ACTN1-211ENST00000553882 IFNL2Q8IZJ0 200 aa17.4■□□□□ 0.38
ACTN1-211ENST00000553882 CYP27B1O15528 508 aa17.4■□□□□ 0.38
ACTN1-211ENST00000553882 OFD1O75665 1012 aa17.4■□□□□ 0.38
ACTN1-211ENST00000553882 TFCP2Q12800 502 aa17.4■□□□□ 0.38
ACTN1-211ENST00000553882 DBNLQ9UJU6 430 aaKnown RBP17.4■□□□□ 0.38
ACTN1-211ENST00000553882 SNRPA1P09661 255 aaKnown RBP17.39■□□□□ 0.37
ACTN1-211ENST00000553882 STK3Q13188 491 aa17.39■□□□□ 0.37
ACTN1-211ENST00000553882 FAM173BQ6P4H8 233 aa17.39■□□□□ 0.37
ACTN1-211ENST00000553882 BLOC1S2Q6QNY1 142 aa17.39■□□□□ 0.37
ACTN1-211ENST00000553882 USP25Q9UHP3 1055 aa17.39■□□□□ 0.37
ACTN1-211ENST00000553882 LARP1BQ659C4 914 aaKnown RBP17.39■□□□□ 0.37
ACTN1-211ENST00000553882 CCDC39Q9UFE4 941 aa17.39■□□□□ 0.37
ACTN1-211ENST00000553882 PTPN12Q05209 780 aaKnown RBP17.38■□□□□ 0.37
ACTN1-211ENST00000553882 RNF20Q5VTR2 975 aa17.38■□□□□ 0.37
ACTN1-211ENST00000553882 GIMAP6Q6P9H5 292 aa17.38■□□□□ 0.37
ACTN1-211ENST00000553882 LRP10Q7Z4F1 713 aa17.38■□□□□ 0.37
ACTN1-211ENST00000553882 DNAJC2Q99543 621 aaKnown RBP17.38■□□□□ 0.37
ACTN1-211ENST00000553882 CHMP3Q9Y3E7 222 aa17.38■□□□□ 0.37
ACTN1-211ENST00000553882 PSMA5P28066 241 aa17.38■□□□□ 0.37
ACTN1-211ENST00000553882 CDC37L1Q7L3B6 337 aa17.38■□□□□ 0.37
ACTN1-211ENST00000553882 A0A087WZG4 1122 aa17.37■□□□□ 0.37
ACTN1-211ENST00000553882 ATF3P18847 181 aa17.37■□□□□ 0.37
ACTN1-211ENST00000553882 TNNI3KQ59H18 835 aa17.37■□□□□ 0.37
ACTN1-211ENST00000553882 FPGT-TNNI3KV9GXZ4 949 aa17.37■□□□□ 0.37
ACTN1-211ENST00000553882 ADAMTS7Q9UKP4 1686 aa17.37■□□□□ 0.37
ACTN1-211ENST00000553882 MED23Q9ULK4 1368 aa17.37■□□□□ 0.37
ACTN1-211ENST00000553882 ZNF500O60304 480 aaPredicted RBP17.37■□□□□ 0.37
ACTN1-211ENST00000553882 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.37■□□□□ 0.37
ACTN1-211ENST00000553882 CCDC129Q6ZRS4 1044 aa17.37■□□□□ 0.37
ACTN1-211ENST00000553882 SEC62Q99442 399 aaKnown RBP17.37■□□□□ 0.37
ACTN1-211ENST00000553882 R3HCC1Q9Y3T6 440 aaKnown RBP17.37■□□□□ 0.37
ACTN1-211ENST00000553882 SCN11AQ9UI33 1791 aa17.37■□□□□ 0.37
ACTN1-211ENST00000553882 KLHL34Q8N239 644 aa17.36■□□□□ 0.37
ACTN1-211ENST00000553882 DCAF5Q96JK2 942 aa17.36■□□□□ 0.37
ACTN1-211ENST00000553882 FMNL2Q96PY5 1086 aa17.36■□□□□ 0.37
ACTN1-211ENST00000553882 COPRSQ9NQ92 184 aa17.36■□□□□ 0.37
ACTN1-211ENST00000553882 TAF5LO75529 589 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms