RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 PIP4K2AP48426 406 aaPredicted RBP14.68□□□□□ -0.06
SHMT2-207ENST00000553837 ZNF496Q96IT1 587 aaPredicted RBP14.68□□□□□ -0.06
SHMT2-207ENST00000553837 BICC1Q9H694 974 aaKnown RBP14.68□□□□□ -0.06
SHMT2-207ENST00000553837 CYP27B1O15528 508 aa14.68□□□□□ -0.06
SHMT2-207ENST00000553837 TATP17735 454 aaPredicted RBP14.68□□□□□ -0.06
SHMT2-207ENST00000553837 HSPA2P54652 639 aa14.68□□□□□ -0.06
SHMT2-207ENST00000553837 HSP90AB4PQ58FF6 505 aa14.68□□□□□ -0.06
SHMT2-207ENST00000553837 FOXD4L5Q5VV16 416 aaPredicted RBP14.68□□□□□ -0.06
SHMT2-207ENST00000553837 RNF214Q8ND24 703 aa14.68□□□□□ -0.06
SHMT2-207ENST00000553837 FOXD4L4Q8WXT5 416 aaPredicted RBP14.68□□□□□ -0.06
SHMT2-207ENST00000553837 PIBF1Q8WXW3 757 aa14.68□□□□□ -0.06
SHMT2-207ENST00000553837 SASH1O94885 1247 aa14.67□□□□□ -0.06
SHMT2-207ENST00000553837 CBX1P83916 185 aa14.67□□□□□ -0.06
SHMT2-207ENST00000553837 NOLC1Q14978 699 aaKnown RBP eCLIP14.67□□□□□ -0.061e-8■■■□□ 15.5
SHMT2-207ENST00000553837 LRP10Q7Z4F1 713 aa14.67□□□□□ -0.06
SHMT2-207ENST00000553837 RASEFQ8IZ41 740 aa14.67□□□□□ -0.06
SHMT2-207ENST00000553837 ZNF710Q8N1W2 664 aa14.67□□□□□ -0.06
SHMT2-207ENST00000553837 RAD50Q92878 1312 aa14.67□□□□□ -0.06
SHMT2-207ENST00000553837 CWC27Q6UX04 472 aaKnown RBP14.67□□□□□ -0.06
SHMT2-207ENST00000553837 CNTROBQ8N137 903 aa14.67□□□□□ -0.06
SHMT2-207ENST00000553837 XAGE3Q8WTP9 111 aa14.67□□□□□ -0.06
SHMT2-207ENST00000553837 SPG7Q9UQ90 795 aa14.67□□□□□ -0.06
SHMT2-207ENST00000553837 KIF3AQ9Y496 699 aa14.67□□□□□ -0.06
SHMT2-207ENST00000553837 USP16Q9Y5T5 823 aa14.67□□□□□ -0.06
SHMT2-207ENST00000553837 TTC41PQ6P2S7 1318 aa14.67□□□□□ -0.06
SHMT2-207ENST00000553837 UVSSAQ2YD98 709 aa14.66□□□□□ -0.06
SHMT2-207ENST00000553837 EPHA10Q5JZY3 1008 aa14.66□□□□□ -0.06
SHMT2-207ENST00000553837 KLHDC4Q8TBB5 520 aa14.66□□□□□ -0.06
SHMT2-207ENST00000553837 SNX14Q9Y5W7 946 aa14.66□□□□□ -0.06
SHMT2-207ENST00000553837 GLRX3O76003 335 aaKnown RBP14.66□□□□□ -0.06
SHMT2-207ENST00000553837 PHF14O94880 888 aa14.66□□□□□ -0.06
SHMT2-207ENST00000553837 CSB-PGBD3P0DP91 1061 aa14.66□□□□□ -0.06
SHMT2-207ENST00000553837 PAXIP1Q6ZW49 1069 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-207ENST00000553837 COPS6Q7L5N1 327 aa14.66□□□□□ -0.06
SHMT2-207ENST00000553837 CLASRPQ8N2M8 674 aaKnown RBP14.66□□□□□ -0.06
SHMT2-207ENST00000553837 NSFL1CQ9UNZ2 370 aaKnown RBP14.66□□□□□ -0.06
SHMT2-207ENST00000553837 NEURL1BA8MQ27 555 aa14.65□□□□□ -0.06
SHMT2-207ENST00000553837 DDX58O95786 925 aaKnown RBP14.65□□□□□ -0.06
SHMT2-207ENST00000553837 MCM2P49736 904 aa14.65□□□□□ -0.06
SHMT2-207ENST00000553837 TNS3Q68CZ2 1445 aa14.65□□□□□ -0.06
SHMT2-207ENST00000553837 RIC3Q7Z5B4 369 aa14.65□□□□□ -0.06
SHMT2-207ENST00000553837 IFNL2Q8IZJ0 200 aa14.65□□□□□ -0.06
SHMT2-207ENST00000553837 FAM184AQ8NB25 1140 aa14.65□□□□□ -0.06
SHMT2-207ENST00000553837 JARID2Q92833 1246 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-207ENST00000553837 EAF2Q96CJ1 260 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-207ENST00000553837 ECHDC1Q9NTX5 307 aa14.65□□□□□ -0.06
SHMT2-207ENST00000553837 AACSQ86V21 672 aa14.64□□□□□ -0.07
SHMT2-207ENST00000553837 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.64□□□□□ -0.07
SHMT2-207ENST00000553837 TLR7Q9NYK1 1049 aaKnown RBP14.64□□□□□ -0.07
SHMT2-207ENST00000553837 DCCP43146 1447 aa14.64□□□□□ -0.07
SHMT2-207ENST00000553837 EPB41L2O43491 1005 aaKnown RBP14.64□□□□□ -0.07
SHMT2-207ENST00000553837 PTH1RQ03431 593 aa14.64□□□□□ -0.07
SHMT2-207ENST00000553837 MYD88Q99836 296 aa14.64□□□□□ -0.07
SHMT2-207ENST00000553837 MRC1P22897 1456 aa14.63□□□□□ -0.07
SHMT2-207ENST00000553837 SPATA31A3Q5VYP0 1347 aa14.63□□□□□ -0.07
SHMT2-207ENST00000553837 BRD1O95696 1058 aa14.63□□□□□ -0.07
SHMT2-207ENST00000553837 GCKRQ14397 625 aa14.63□□□□□ -0.07
SHMT2-207ENST00000553837 LARP1Q6PKG0 1096 aaKnown RBP14.63□□□□□ -0.07
SHMT2-207ENST00000553837 TTC14Q96N46 770 aa14.63□□□□□ -0.07
SHMT2-207ENST00000553837 LARP6Q9BRS8 491 aaKnown RBP14.63□□□□□ -0.07
SHMT2-207ENST00000553837 CCDC8Q9H0W5 538 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-207ENST00000553837 SIL1Q9H173 461 aa14.63□□□□□ -0.07
SHMT2-207ENST00000553837 IFIT2P09913 472 aaKnown RBP14.63□□□□□ -0.07
SHMT2-207ENST00000553837 CPA1P15085 419 aa14.63□□□□□ -0.07
SHMT2-207ENST00000553837 METTL22Q9BUU2 404 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-207ENST00000553837 SPTLC3Q9NUV7 552 aa14.63□□□□□ -0.07
SHMT2-207ENST00000553837 GLI3P10071 1580 aa14.63□□□□□ -0.07
SHMT2-207ENST00000553837 STRCQ7RTU9 1775 aa14.62□□□□□ -0.07
SHMT2-207ENST00000553837 ATP2B3Q16720 1220 aa14.62□□□□□ -0.07
SHMT2-207ENST00000553837 ERC1Q8IUD2 1116 aa14.62□□□□□ -0.07
SHMT2-207ENST00000553837 INTS4Q96HW7 963 aaKnown RBP14.62□□□□□ -0.07
SHMT2-207ENST00000553837 DCAF5Q96JK2 942 aa14.62□□□□□ -0.07
SHMT2-207ENST00000553837 ABCC6O95255 1503 aa14.62□□□□□ -0.07
SHMT2-207ENST00000553837 PKD1L3Q7Z443 1732 aa14.62□□□□□ -0.07
SHMT2-207ENST00000553837 TSC1Q92574 1164 aa14.61□□□□□ -0.07
SHMT2-207ENST00000553837 CADPS2Q86UW7 1296 aa14.61□□□□□ -0.07
SHMT2-207ENST00000553837 PDCL2Q8N4E4 241 aa14.61□□□□□ -0.07
SHMT2-207ENST00000553837 DIAPH3Q9NSV4 1193 aa14.61□□□□□ -0.07
SHMT2-207ENST00000553837 SNRPA1P09661 255 aaKnown RBP14.6□□□□□ -0.07
SHMT2-207ENST00000553837 AK2P54819 239 aa14.6□□□□□ -0.07
SHMT2-207ENST00000553837 G3BP1Q13283 466 aaKnown RBP eCLIP14.6□□□□□ -0.072e-7■■■□□ 18
SHMT2-207ENST00000553837 ADCK5Q3MIX3 580 aa14.6□□□□□ -0.07
SHMT2-207ENST00000553837 ANKRD13DQ6ZTN6 518 aa14.6□□□□□ -0.07
SHMT2-207ENST00000553837 RUFY3Q7L099 469 aa14.6□□□□□ -0.07
SHMT2-207ENST00000553837 COL9A3Q14050 684 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-207ENST00000553837 KLHL34Q8N239 644 aa14.6□□□□□ -0.07
SHMT2-207ENST00000553837 FAM227BQ96M60 508 aa14.6□□□□□ -0.07
SHMT2-207ENST00000553837 BCL2L12Q9HB09 334 aa14.6□□□□□ -0.07
SHMT2-207ENST00000553837 HDAC5Q9UQL6 1122 aa14.6□□□□□ -0.07
SHMT2-207ENST00000553837 XIRP1Q702N8 1843 aaKnown RBP14.6□□□□□ -0.07
SHMT2-207ENST00000553837 DTNBO60941 627 aa14.59□□□□□ -0.07
SHMT2-207ENST00000553837 NEXNQ0ZGT2 675 aa14.59□□□□□ -0.07
SHMT2-207ENST00000553837 CHAF1AQ13111 956 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-207ENST00000553837 TTC5Q8N0Z6 440 aa14.59□□□□□ -0.07
SHMT2-207ENST00000553837 ZNF830Q96NB3 372 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-207ENST00000553837 CPDO75976 1380 aa14.59□□□□□ -0.07
SHMT2-207ENST00000553837 ATP5J2-PTCD1G3V325 749 aa14.58□□□□□ -0.07
SHMT2-207ENST00000553837 PTCD1O75127 700 aaKnown RBP14.58□□□□□ -0.07
SHMT2-207ENST00000553837 RFX5P48382 616 aaPredicted RBP14.58□□□□□ -0.07
SHMT2-207ENST00000553837 TEX2Q8IWB9 1127 aa14.58□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 110.6 ms