RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 KCNQ3O43525 872 aa18.69■□□□□ 0.58
PRPF39-204ENST00000553605 NOGQ13253 232 aa18.69■□□□□ 0.58
PRPF39-204ENST00000553605 GRIPAP1Q4V328 841 aa18.69■□□□□ 0.58
PRPF39-204ENST00000553605 GLIS2Q9BZE0 524 aaPredicted RBP18.69■□□□□ 0.58
PRPF39-204ENST00000553605 GPRC5DQ9NZD1 345 aa18.69■□□□□ 0.58
PRPF39-204ENST00000553605 NIM1KQ8IY84 436 aa18.68■□□□□ 0.58
PRPF39-204ENST00000553605 ZIC5Q96T25 663 aa18.68■□□□□ 0.58
PRPF39-204ENST00000553605 ZNF408Q9H9D4 720 aa18.68■□□□□ 0.58
PRPF39-204ENST00000553605 KNSTRNQ9Y448 316 aa18.68■□□□□ 0.58
PRPF39-204ENST00000553605 BTBD11A6QL63 1104 aa18.67■□□□□ 0.58
PRPF39-204ENST00000553605 RGL2O15211 777 aa18.67■□□□□ 0.58
PRPF39-204ENST00000553605 DIAPH1O60610 1272 aaKnown RBP18.67■□□□□ 0.58
PRPF39-204ENST00000553605 CRY2Q49AN0 593 aa18.67■□□□□ 0.58
PRPF39-204ENST00000553605 PGAP2Q9UHJ9 254 aa18.67■□□□□ 0.58
PRPF39-204ENST00000553605 GAS2L2Q8NHY3 880 aa18.66■□□□□ 0.58
PRPF39-204ENST00000553605 PRAMEF22A3QJZ6 481 aa18.65■□□□□ 0.58
PRPF39-204ENST00000553605 RPGRQ92834 1020 aaKnown RBP18.65■□□□□ 0.58
PRPF39-204ENST00000553605 SIPA1L3O60292 1781 aaPredicted RBP18.65■□□□□ 0.58
PRPF39-204ENST00000553605 HLFQ16534 295 aa18.64■□□□□ 0.57
PRPF39-204ENST00000553605 CDC37L1Q7L3B6 337 aa18.64■□□□□ 0.57
PRPF39-204ENST00000553605 PPIP5K2O43314 1243 aa18.63■□□□□ 0.57
PRPF39-204ENST00000553605 SNRPA1P09661 255 aaKnown RBP18.63■□□□□ 0.57
PRPF39-204ENST00000553605 HOXA10P31260 410 aaPredicted RBP18.63■□□□□ 0.57
PRPF39-204ENST00000553605 NUTM1Q86Y26 1132 aa18.63■□□□□ 0.57
PRPF39-204ENST00000553605 ZC3H15Q8WU90 426 aaKnown RBP18.63■□□□□ 0.57
PRPF39-204ENST00000553605 NYXQ9GZU5 481 aa18.63■□□□□ 0.57
PRPF39-204ENST00000553605 SAGE1Q9NXZ1 904 aa18.63■□□□□ 0.57
PRPF39-204ENST00000553605 NBPF26B4DH59 902 aa18.62■□□□□ 0.57
PRPF39-204ENST00000553605 TCERG1O14776 1098 aaKnown RBP18.62■□□□□ 0.57
PRPF39-204ENST00000553605 GMPSP49915 693 aaPredicted RBP18.62■□□□□ 0.57
PRPF39-204ENST00000553605 HUNKP57058 714 aa18.62■□□□□ 0.57
PRPF39-204ENST00000553605 CXCL9Q07325 125 aa18.62■□□□□ 0.57
PRPF39-204ENST00000553605 NBPF10Q6P3W6 841 aaKnown RBP18.62■□□□□ 0.57
PRPF39-204ENST00000553605 NBPF15Q8N660 670 aa18.62■□□□□ 0.57
PRPF39-204ENST00000553605 NPC1L1Q9UHC9 1359 aa18.62■□□□□ 0.57
PRPF39-204ENST00000553605 CEMIPQ8WUJ3 1361 aa18.61■□□□□ 0.57
PRPF39-204ENST00000553605 ABCC12Q96J65 1359 aa18.61■□□□□ 0.57
PRPF39-204ENST00000553605 PPEF1O14829 653 aaPredicted RBP18.61■□□□□ 0.57
PRPF39-204ENST00000553605 HIRAP54198 1017 aaPredicted RBP18.61■□□□□ 0.57
PRPF39-204ENST00000553605 AOC3Q16853 763 aa18.61■□□□□ 0.57
PRPF39-204ENST00000553605 SLC51AQ86UW1 340 aa18.61■□□□□ 0.57
PRPF39-204ENST00000553605 VPS33BQ9H267 617 aa18.61■□□□□ 0.57
PRPF39-204ENST00000553605 ZNRF3Q9ULT6 936 aa18.61■□□□□ 0.57
PRPF39-204ENST00000553605 KIF7Q2M1P5 1343 aa18.6■□□□□ 0.57
PRPF39-204ENST00000553605 AMER1Q5JTC6 1135 aaPredicted RBP18.6■□□□□ 0.57
PRPF39-204ENST00000553605 RBM17Q96I25 401 aaKnown RBP18.6■□□□□ 0.57
PRPF39-204ENST00000553605 CRAMP1Q96RY5 1269 aa18.6■□□□□ 0.57
PRPF39-204ENST00000553605 TRPA1O75762 1119 aa18.59■□□□□ 0.57
PRPF39-204ENST00000553605 RGMBQ6NW40 437 aa18.59■□□□□ 0.57
PRPF39-204ENST00000553605 BCL2L13Q9BXK5 485 aa18.59■□□□□ 0.57
PRPF39-204ENST00000553605 TMX4Q9H1E5 349 aaPredicted RBP18.59■□□□□ 0.57
PRPF39-204ENST00000553605 RNF186Q9NXI6 227 aa18.59■□□□□ 0.57
PRPF39-204ENST00000553605 FAM155AB1AL88 458 aaPredicted RBP18.58■□□□□ 0.56
PRPF39-204ENST00000553605 U2SURPO15042 1029 aaKnown RBP18.58■□□□□ 0.56
PRPF39-204ENST00000553605 KIF23Q02241 960 aaPredicted RBP18.58■□□□□ 0.56
PRPF39-204ENST00000553605 USP48Q86UV5 1035 aa18.58■□□□□ 0.56
PRPF39-204ENST00000553605 CDHR2Q9BYE9 1310 aa18.57■□□□□ 0.56
PRPF39-204ENST00000553605 CTU1Q7Z7A3 348 aaKnown RBP18.57■□□□□ 0.56
PRPF39-204ENST00000553605 TRPM4Q8TD43 1214 aa18.57■□□□□ 0.56
PRPF39-204ENST00000553605 CCDC102AQ96A19 550 aa18.57■□□□□ 0.56
PRPF39-204ENST00000553605 HSPA5P11021 654 aaKnown RBP18.56■□□□□ 0.56
PRPF39-204ENST00000553605 EIF4G2P78344 907 aaKnown RBP eCLIP18.56■□□□□ 0.56
PRPF39-204ENST00000553605 SUPT20HQ8NEM7 779 aa18.56■□□□□ 0.56
PRPF39-204ENST00000553605 TIMELESSQ9UNS1 1208 aa18.56■□□□□ 0.56
PRPF39-204ENST00000553605 RIC1Q4ADV7 1423 aa18.56■□□□□ 0.56
PRPF39-204ENST00000553605 TNIP1Q15025 636 aa18.55■□□□□ 0.56
PRPF39-204ENST00000553605 DLK2Q6UY11 383 aa18.55■□□□□ 0.56
PRPF39-204ENST00000553605 GCC1Q96CN9 775 aa18.55■□□□□ 0.56
PRPF39-204ENST00000553605 CNOT7Q9UIV1 285 aaKnown RBP18.55■□□□□ 0.56
PRPF39-204ENST00000553605 ATP6V0A2Q9Y487 856 aa18.55■□□□□ 0.56
PRPF39-204ENST00000553605 ERVV-1B6SEH8 477 aa18.54■□□□□ 0.56
PRPF39-204ENST00000553605 H7C1D1 291 aa18.54■□□□□ 0.56
PRPF39-204ENST00000553605 RAD17O75943 681 aa18.54■□□□□ 0.56
PRPF39-204ENST00000553605 ZNF157P51786 506 aaPredicted RBP18.54■□□□□ 0.56
PRPF39-204ENST00000553605 NGEFQ8N5V2 710 aa18.54■□□□□ 0.56
PRPF39-204ENST00000553605 C2orf69Q8N8R5 385 aa18.54■□□□□ 0.56
PRPF39-204ENST00000553605 RTFDC1Q9BY42 306 aaPredicted RBP18.54■□□□□ 0.56
PRPF39-204ENST00000553605 GBA2Q9HCG7 927 aaPredicted RBP18.54■□□□□ 0.56
PRPF39-204ENST00000553605 HPS5Q9UPZ3 1129 aa18.54■□□□□ 0.56
PRPF39-204ENST00000553605 PHACTR3Q96KR7 559 aa18.53■□□□□ 0.56
PRPF39-204ENST00000553605 SHTN1A0MZ66 631 aa18.52■□□□□ 0.56
PRPF39-204ENST00000553605 GPTP24298 496 aa18.52■□□□□ 0.56
PRPF39-204ENST00000553605 SUSD4Q5VX71 490 aa18.52■□□□□ 0.56
PRPF39-204ENST00000553605 CSRNP1Q96S65 589 aa18.52■□□□□ 0.56
PRPF39-204ENST00000553605 DPP8Q6V1X1 898 aaPredicted RBP18.51■□□□□ 0.55
PRPF39-204ENST00000553605 C3orf67Q6ZVT6 689 aa18.51■□□□□ 0.55
PRPF39-204ENST00000553605 KRT26Q7Z3Y9 468 aa18.51■□□□□ 0.55
PRPF39-204ENST00000553605 MAP3K15Q6ZN16 1313 aa18.5■□□□□ 0.55
PRPF39-204ENST00000553605 UBN2Q6ZU65 1347 aa18.5■□□□□ 0.55
PRPF39-204ENST00000553605 KIAA2012Q0VF49 1180 aa18.5■□□□□ 0.55
PRPF39-204ENST00000553605 PKN2Q16513 984 aaKnown RBP18.5■□□□□ 0.55
PRPF39-204ENST00000553605 MICALL2Q8IY33 904 aa18.5■□□□□ 0.55
PRPF39-204ENST00000553605 RTF1Q92541 710 aaKnown RBP18.5■□□□□ 0.55
PRPF39-204ENST00000553605 NLRP3Q96P20 1036 aa18.5■□□□□ 0.55
PRPF39-204ENST00000553605 IBTKQ9P2D0 1353 aaPredicted RBP18.5■□□□□ 0.55
PRPF39-204ENST00000553605 AKAP11Q9UKA4 1901 aa18.49■□□□□ 0.55
PRPF39-204ENST00000553605 KIF6Q6ZMV9 814 aa18.49■□□□□ 0.55
PRPF39-204ENST00000553605 MCM10Q7L590 875 aa18.49■□□□□ 0.55
PRPF39-204ENST00000553605 MPNDQ8N594 471 aa18.49■□□□□ 0.55
PRPF39-204ENST00000553605 NTSR2O95665 410 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms