RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 RPGRQ92834 1020 aaKnown RBP19.7■□□□□ 0.74
SHMT2-204ENST00000553324 ISCA1Q9BUE6 129 aa19.7■□□□□ 0.74
SHMT2-204ENST00000553324 BRCA1P38398 1863 aaKnown RBP19.7■□□□□ 0.74
SHMT2-204ENST00000553324 NUP98P52948 1817 aa19.69■□□□□ 0.74
SHMT2-204ENST00000553324 RIC1Q4ADV7 1423 aa19.69■□□□□ 0.74
SHMT2-204ENST00000553324 VAMP4O75379 141 aa19.69■□□□□ 0.74
SHMT2-204ENST00000553324 SLC4A2P04920 1241 aa19.69■□□□□ 0.74
SHMT2-204ENST00000553324 LMNB1P20700 586 aa19.69■□□□□ 0.74
SHMT2-204ENST00000553324 HOXA10P31260 410 aaPredicted RBP19.69■□□□□ 0.74
SHMT2-204ENST00000553324 RBM17Q96I25 401 aaKnown RBP19.69■□□□□ 0.74
SHMT2-204ENST00000553324 SH3TC1Q8TE82 1336 aa19.69■□□□□ 0.74
SHMT2-204ENST00000553324 ADCY9O60503 1353 aa19.69■□□□□ 0.74
SHMT2-204ENST00000553324 HSP90B1P14625 803 aaKnown RBP19.68■□□□□ 0.74
SHMT2-204ENST00000553324 EXOSC9Q06265 439 aaKnown RBP19.68■□□□□ 0.74
SHMT2-204ENST00000553324 GPBP1L1Q9HC44 474 aaPredicted RBP19.68■□□□□ 0.74
SHMT2-204ENST00000553324 ZNF521Q96K83 1311 aa19.68■□□□□ 0.74
SHMT2-204ENST00000553324 ARFGEF1Q9Y6D6 1849 aa19.67■□□□□ 0.74
SHMT2-204ENST00000553324 KSR2Q6VAB6 950 aa19.67■□□□□ 0.74
SHMT2-204ENST00000553324 C7orf43Q8WVR3 580 aa19.67■□□□□ 0.74
SHMT2-204ENST00000553324 CRAMP1Q96RY5 1269 aa19.67■□□□□ 0.74
SHMT2-204ENST00000553324 SPINK5Q9NQ38 1064 aaPredicted RBP19.67■□□□□ 0.74
SHMT2-204ENST00000553324 RNF181Q9P0P0 153 aa19.67■□□□□ 0.74
SHMT2-204ENST00000553324 ZNF219Q9P2Y4 722 aaPredicted RBP19.67■□□□□ 0.74
SHMT2-204ENST00000553324 ABCC12Q96J65 1359 aa19.67■□□□□ 0.74
SHMT2-204ENST00000553324 E9PSI1 815 aa19.66■□□□□ 0.74
SHMT2-204ENST00000553324 ATP5J2-PTCD1G3V325 749 aa19.66■□□□□ 0.74
SHMT2-204ENST00000553324 GRIPAP1Q4V328 841 aa19.66■□□□□ 0.74
SHMT2-204ENST00000553324 CCDC93Q567U6 631 aa19.66■□□□□ 0.74
SHMT2-204ENST00000553324 CC2D2BQ6DHV5 1058 aa19.66■□□□□ 0.74
SHMT2-204ENST00000553324 RTKN2Q8IZC4 609 aa19.66■□□□□ 0.74
SHMT2-204ENST00000553324 CCDC191Q8NCU4 936 aa19.66■□□□□ 0.74
SHMT2-204ENST00000553324 METTL22Q9BUU2 404 aaPredicted RBP19.66■□□□□ 0.74
SHMT2-204ENST00000553324 ANKRD31Q8N7Z5 1873 aa19.66■□□□□ 0.74
SHMT2-204ENST00000553324 TMX4Q9H1E5 349 aaPredicted RBP19.65■□□□□ 0.74
SHMT2-204ENST00000553324 TAOK3Q9H2K8 898 aa19.65■□□□□ 0.74
SHMT2-204ENST00000553324 LTBP3Q9NS15 1303 aa19.65■□□□□ 0.74
SHMT2-204ENST00000553324 ZC3H4Q9UPT8 1303 aaKnown RBP19.65■□□□□ 0.74
SHMT2-204ENST00000553324 DLEC1Q9Y238 1755 aa19.65■□□□□ 0.74
SHMT2-204ENST00000553324 PI4KAP2A4QPH2 592 aa19.64■□□□□ 0.73
SHMT2-204ENST00000553324 NFKBIEO00221 500 aa19.64■□□□□ 0.73
SHMT2-204ENST00000553324 RASSF7Q02833 373 aa19.64■□□□□ 0.73
SHMT2-204ENST00000553324 NEXNQ0ZGT2 675 aa19.64■□□□□ 0.73
SHMT2-204ENST00000553324 PI4KAP1Q8N8J0 262 aa19.64■□□□□ 0.73
SHMT2-204ENST00000553324 ZBTB38Q8NAP3 1195 aaPredicted RBP19.64■□□□□ 0.73
SHMT2-204ENST00000553324 MYD88Q99836 296 aa19.64■□□□□ 0.73
SHMT2-204ENST00000553324 MAP3K2Q9Y2U5 619 aa19.64■□□□□ 0.73
SHMT2-204ENST00000553324 TCERG1O14776 1098 aaKnown RBP19.63■□□□□ 0.73
SHMT2-204ENST00000553324 HCLS1P14317 486 aaPredicted RBP19.63■□□□□ 0.73
SHMT2-204ENST00000553324 FAM89AQ96GI7 184 aa19.63■□□□□ 0.73
SHMT2-204ENST00000553324 BBOX1O75936 387 aa19.62■□□□□ 0.73
SHMT2-204ENST00000553324 FLIIQ13045 1269 aa19.62■□□□□ 0.73
SHMT2-204ENST00000553324 DDX46Q7L014 1031 aaKnown RBP19.62■□□□□ 0.73
SHMT2-204ENST00000553324 CWC25Q9NXE8 425 aaPredicted RBP19.62■□□□□ 0.73
SHMT2-204ENST00000553324 SYNE4Q8N205 404 aa19.61■□□□□ 0.73
SHMT2-204ENST00000553324 ZNF526Q8TF50 670 aaPredicted RBP19.61■□□□□ 0.73
SHMT2-204ENST00000553324 KDM2BQ8NHM5 1336 aa19.6■□□□□ 0.73
SHMT2-204ENST00000553324 IRS4O14654 1257 aaPredicted RBP19.6■□□□□ 0.73
SHMT2-204ENST00000553324 FKBP4Q02790 459 aaKnown RBP eCLIP19.6■□□□□ 0.73
SHMT2-204ENST00000553324 FKBP5Q13451 457 aaPredicted RBP19.6■□□□□ 0.73
SHMT2-204ENST00000553324 C3orf67Q6ZVT6 689 aa19.6■□□□□ 0.73
SHMT2-204ENST00000553324 MIER1Q8N108 512 aa19.6■□□□□ 0.73
SHMT2-204ENST00000553324 PCCAP05165 728 aaPredicted RBP19.59■□□□□ 0.73
SHMT2-204ENST00000553324 SLFN5Q08AF3 891 aa19.59■□□□□ 0.73
SHMT2-204ENST00000553324 SF3B3Q15393 1217 aaKnown RBP19.59■□□□□ 0.73
SHMT2-204ENST00000553324 DPY19L2Q6NUT2 758 aa19.59■□□□□ 0.73
SHMT2-204ENST00000553324 G2E3Q7L622 706 aa19.59■□□□□ 0.73
SHMT2-204ENST00000553324 PPEF1O14829 653 aaPredicted RBP19.58■□□□□ 0.72
SHMT2-204ENST00000553324 TMC4Q7Z404 712 aa19.58■□□□□ 0.72
SHMT2-204ENST00000553324 ZNF428Q96B54 188 aa19.58■□□□□ 0.72
SHMT2-204ENST00000553324 PSMD1Q99460 953 aa19.58■□□□□ 0.72
SHMT2-204ENST00000553324 COL11A2P13942 1736 aaPredicted RBP19.58■□□□□ 0.72
SHMT2-204ENST00000553324 PRELPP51888 382 aa19.57■□□□□ 0.72
SHMT2-204ENST00000553324 GRAPQ13588 217 aa19.57■□□□□ 0.72
SHMT2-204ENST00000553324 RTL5Q5HYW3 569 aaPredicted RBP19.57■□□□□ 0.72
SHMT2-204ENST00000553324 GRAPLQ8TC17 118 aaPredicted RBP19.57■□□□□ 0.72
SHMT2-204ENST00000553324 ATP6V0A2Q9Y487 856 aa19.57■□□□□ 0.72
SHMT2-204ENST00000553324 SLX4Q8IY92 1834 aa19.57■□□□□ 0.72
SHMT2-204ENST00000553324 GLTPD2A6NH11 291 aa19.56■□□□□ 0.72
SHMT2-204ENST00000553324 SP8Q8IXZ3 490 aa19.56■□□□□ 0.72
SHMT2-204ENST00000553324 DNAAF4Q8WXU2 420 aa19.56■□□□□ 0.72
SHMT2-204ENST00000553324 ABCC4O15439 1325 aa19.55■□□□□ 0.72
SHMT2-204ENST00000553324 PDE8AO60658 829 aa19.55■□□□□ 0.72
SHMT2-204ENST00000553324 IGKV5-2P06315 115 aa19.55■□□□□ 0.72
SHMT2-204ENST00000553324 C1QTNF8P60827 252 aa19.55■□□□□ 0.72
SHMT2-204ENST00000553324 ANKRD36CQ5JPF3 1778 aa19.55■□□□□ 0.72
SHMT2-204ENST00000553324 NEURL1BA8MQ27 555 aa19.54■□□□□ 0.72
SHMT2-204ENST00000553324 OLFM4Q6UX06 510 aa19.54■□□□□ 0.72
SHMT2-204ENST00000553324 LINS1Q8NG48 757 aa19.54■□□□□ 0.72
SHMT2-204ENST00000553324 VPS33BQ9H267 617 aa19.54■□□□□ 0.72
SHMT2-204ENST00000553324 CT47B1P0C2W7 299 aaPredicted RBP19.53■□□□□ 0.72
SHMT2-204ENST00000553324 CCDC152Q4G0S7 254 aa19.53■□□□□ 0.72
SHMT2-204ENST00000553324 TRMT2AQ8IZ69 625 aaKnown RBP19.53■□□□□ 0.72
SHMT2-204ENST00000553324 SUPT20HQ8NEM7 779 aa19.53■□□□□ 0.72
SHMT2-204ENST00000553324 ZNF277Q9NRM2 450 aaPredicted RBP19.53■□□□□ 0.72
SHMT2-204ENST00000553324 TNRC6CQ9HCJ0 1690 aaKnown RBP19.52■□□□□ 0.72
SHMT2-204ENST00000553324 CDHR2Q9BYE9 1310 aa19.52■□□□□ 0.72
SHMT2-204ENST00000553324 IARSP41252 1262 aaKnown RBP19.52■□□□□ 0.72
SHMT2-204ENST00000553324 JDP2Q8WYK2 163 aa19.52■□□□□ 0.72
SHMT2-204ENST00000553324 H7C1W4 665 aa19.51■□□□□ 0.71
SHMT2-204ENST00000553324 KIF3CO14782 793 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 168.2 ms