RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 STK32BQ9NY57 414 aa12.09□□□□□ -0.47
LIMA1-211ENST00000552338 TFCP2L1Q9NZI6 479 aa12.09□□□□□ -0.47
LIMA1-211ENST00000552338 HDAC5Q9UQL6 1122 aa12.09□□□□□ -0.47
LIMA1-211ENST00000552338 MYH3P11055 1940 aa12.09□□□□□ -0.47
LIMA1-211ENST00000552338 LAMB2P55268 1798 aa12.08□□□□□ -0.48
LIMA1-211ENST00000552338 CASZ1Q86V15 1759 aa12.08□□□□□ -0.48
LIMA1-211ENST00000552338 PCCAP05165 728 aaPredicted RBP12.08□□□□□ -0.48
LIMA1-211ENST00000552338 NEFLP07196 543 aa12.08□□□□□ -0.48
LIMA1-211ENST00000552338 GNAI3P08754 354 aa12.08□□□□□ -0.48
LIMA1-211ENST00000552338 USPL1Q5W0Q7 1092 aa12.08□□□□□ -0.48
LIMA1-211ENST00000552338 SLC4A10Q6U841 1118 aa12.08□□□□□ -0.48
LIMA1-211ENST00000552338 ITPRIPQ8IWB1 547 aa12.08□□□□□ -0.48
LIMA1-211ENST00000552338 PLA2G12BQ9BX93 195 aa12.08□□□□□ -0.48
LIMA1-211ENST00000552338 CDHR2Q9BYE9 1310 aa12.08□□□□□ -0.48
LIMA1-211ENST00000552338 GRM8O00222 908 aa12.07□□□□□ -0.48
LIMA1-211ENST00000552338 CWF19L2Q2TBE0 894 aaKnown RBP12.07□□□□□ -0.48
LIMA1-211ENST00000552338 NLGN1Q8N2Q7 840 aa12.07□□□□□ -0.48
LIMA1-211ENST00000552338 ZBTB38Q8NAP3 1195 aaPredicted RBP12.07□□□□□ -0.48
LIMA1-211ENST00000552338 EXOC6Q8TAG9 804 aa12.07□□□□□ -0.48
LIMA1-211ENST00000552338 CWC25Q9NXE8 425 aaPredicted RBP12.07□□□□□ -0.48
LIMA1-211ENST00000552338 UBN2Q6ZU65 1347 aa12.07□□□□□ -0.48
LIMA1-211ENST00000552338 RIC1Q4ADV7 1423 aa12.06□□□□□ -0.48
LIMA1-211ENST00000552338 MTX1Q13505 466 aa12.06□□□□□ -0.48
LIMA1-211ENST00000552338 SLC10A5Q5PT55 438 aa12.06□□□□□ -0.48
LIMA1-211ENST00000552338 MEIS3Q99687 375 aa12.06□□□□□ -0.48
LIMA1-211ENST00000552338 SRP68Q9UHB9 627 aaKnown RBP12.06□□□□□ -0.48
LIMA1-211ENST00000552338 ZNF330Q9Y3S2 320 aaPredicted RBP12.06□□□□□ -0.48
LIMA1-211ENST00000552338 DDX60Q8IY21 1712 aaKnown RBP12.06□□□□□ -0.48
LIMA1-211ENST00000552338 ATP5J2-PTCD1G3V325 749 aa12.05□□□□□ -0.48
LIMA1-211ENST00000552338 NBPF7P0C2Y1 421 aaPredicted RBP12.05□□□□□ -0.48
LIMA1-211ENST00000552338 RABL6Q3YEC7 729 aaPredicted RBP12.05□□□□□ -0.48
LIMA1-211ENST00000552338 TBC1D9BQ66K14 1250 aa12.05□□□□□ -0.48
LIMA1-211ENST00000552338 PPP1R42Q7Z4L9 355 aa12.05□□□□□ -0.48
LIMA1-211ENST00000552338 RPAP2Q8IXW5 612 aaPredicted RBP12.05□□□□□ -0.48
LIMA1-211ENST00000552338 KAZALD1Q96I82 304 aa12.05□□□□□ -0.48
LIMA1-211ENST00000552338 NIP7Q9Y221 180 aaKnown RBP eCLIP12.05□□□□□ -0.48
LIMA1-211ENST00000552338 PHF14O94880 888 aa12.04□□□□□ -0.48
LIMA1-211ENST00000552338 NTSR2O95665 410 aa12.04□□□□□ -0.48
LIMA1-211ENST00000552338 FKBP8Q14318 412 aa12.04□□□□□ -0.48
LIMA1-211ENST00000552338 SUSD4Q5VX71 490 aa12.04□□□□□ -0.48
LIMA1-211ENST00000552338 SMIM5Q71RC9 77 aa12.04□□□□□ -0.48
LIMA1-211ENST00000552338 SETDB2Q96T68 719 aa12.04□□□□□ -0.48
LIMA1-211ENST00000552338 NYXQ9GZU5 481 aa12.04□□□□□ -0.48
LIMA1-211ENST00000552338 CARMIL3Q8ND23 1372 aa12.04□□□□□ -0.48
LIMA1-211ENST00000552338 GNAI2P04899 355 aa12.03□□□□□ -0.48
LIMA1-211ENST00000552338 CSF1RP07333 972 aa12.03□□□□□ -0.48
LIMA1-211ENST00000552338 UBTFL1P0CB47 393 aaPredicted RBP12.03□□□□□ -0.48
LIMA1-211ENST00000552338 HSP90B1P14625 803 aaKnown RBP12.03□□□□□ -0.48
LIMA1-211ENST00000552338 NFIXQ14938 502 aa12.03□□□□□ -0.48
LIMA1-211ENST00000552338 UTP14AQ9BVJ6 771 aaKnown RBP12.03□□□□□ -0.48
LIMA1-211ENST00000552338 C9orf78Q9NZ63 289 aaPredicted RBP12.03□□□□□ -0.48
LIMA1-211ENST00000552338 ATP8B2P98198 1209 aa12.02□□□□□ -0.49
LIMA1-211ENST00000552338 HDAC1Q13547 482 aaPredicted RBP12.02□□□□□ -0.49
LIMA1-211ENST00000552338 TPTE2Q6XPS3 522 aa12.02□□□□□ -0.49
LIMA1-211ENST00000552338 ANKRD44Q8N8A2 993 aa12.02□□□□□ -0.49
LIMA1-211ENST00000552338 ARXQ96QS3 562 aa12.02□□□□□ -0.49
LIMA1-211ENST00000552338 PPP4R2Q9NY27 417 aa12.02□□□□□ -0.49
LIMA1-211ENST00000552338 PCDHB15Q9Y5E8 787 aa12.02□□□□□ -0.49
LIMA1-211ENST00000552338 SH3TC1Q8TE82 1336 aa12.02□□□□□ -0.49
LIMA1-211ENST00000552338 KIF13BQ9NQT8 1826 aa12.02□□□□□ -0.49
LIMA1-211ENST00000552338 KLRG2A4D1S0 409 aaPredicted RBP12.01□□□□□ -0.49
LIMA1-211ENST00000552338 POLRMTO00411 1230 aaKnown RBP12.01□□□□□ -0.49
LIMA1-211ENST00000552338 PDE8AO60658 829 aa12.01□□□□□ -0.49
LIMA1-211ENST00000552338 GPTP24298 496 aa12.01□□□□□ -0.49
LIMA1-211ENST00000552338 IRX6P78412 446 aaPredicted RBP12.01□□□□□ -0.49
LIMA1-211ENST00000552338 FOXO4P98177 505 aa12.01□□□□□ -0.49
LIMA1-211ENST00000552338 CEP85Q6P2H3 762 aa12.01□□□□□ -0.49
LIMA1-211ENST00000552338 RTL9Q8NET4 1388 aa12.01□□□□□ -0.49
LIMA1-211ENST00000552338 POLA2Q14181 598 aa12□□□□□ -0.49
LIMA1-211ENST00000552338 SF3B3Q15393 1217 aaKnown RBP12□□□□□ -0.49
LIMA1-211ENST00000552338 UBE3BQ7Z3V4 1068 aa12□□□□□ -0.49
LIMA1-211ENST00000552338 SIRT2Q8IXJ6 389 aa12□□□□□ -0.49
LIMA1-211ENST00000552338 SSH3Q8TE77 659 aa12□□□□□ -0.49
LIMA1-211ENST00000552338 SUCLG2Q96I99 432 aa12□□□□□ -0.49
LIMA1-211ENST00000552338 TRMT112Q9UI30 125 aaKnown RBP12□□□□□ -0.49
LIMA1-211ENST00000552338 ANKRD31Q8N7Z5 1873 aa12□□□□□ -0.49
LIMA1-211ENST00000552338 SERPINB2P05120 415 aa11.99□□□□□ -0.49
LIMA1-211ENST00000552338 DDR1Q08345 913 aa11.99□□□□□ -0.49
LIMA1-211ENST00000552338 FAM89AQ96GI7 184 aa11.99□□□□□ -0.49
LIMA1-211ENST00000552338 LRRFIP2Q9Y608 721 aaKnown RBP11.99□□□□□ -0.49
LIMA1-211ENST00000552338 IRS4O14654 1257 aaPredicted RBP11.98□□□□□ -0.49
LIMA1-211ENST00000552338 EPHA10Q5JZY3 1008 aa11.98□□□□□ -0.49
LIMA1-211ENST00000552338 PRR5LQ6MZQ0 368 aa11.98□□□□□ -0.49
LIMA1-211ENST00000552338 TTLL11Q8NHH1 800 aa11.98□□□□□ -0.49
LIMA1-211ENST00000552338 SGIP1Q9BQI5 828 aa11.98□□□□□ -0.49
LIMA1-211ENST00000552338 MTFR1LQ9H019 292 aa11.98□□□□□ -0.49
LIMA1-211ENST00000552338 FBXO3Q9UK99 471 aa11.98□□□□□ -0.49
LIMA1-211ENST00000552338 NOP58Q9Y2X3 529 aaKnown RBP11.98□□□□□ -0.49
LIMA1-211ENST00000552338 GTF3C3Q9Y5Q9 886 aa11.98□□□□□ -0.49
LIMA1-211ENST00000552338 KDM2BQ8NHM5 1336 aa11.97□□□□□ -0.49
LIMA1-211ENST00000552338 RFX5P48382 616 aaPredicted RBP11.97□□□□□ -0.49
LIMA1-211ENST00000552338 CRY2Q49AN0 593 aa11.97□□□□□ -0.49
LIMA1-211ENST00000552338 NBPF5PQ86XG9 351 aaPredicted RBP11.97□□□□□ -0.49
LIMA1-211ENST00000552338 PDGFDQ9GZP0 370 aaPredicted RBP11.97□□□□□ -0.49
LIMA1-211ENST00000552338 BICC1Q9H694 974 aaKnown RBP11.97□□□□□ -0.49
LIMA1-211ENST00000552338 DCTPP1Q9H773 170 aa11.97□□□□□ -0.49
LIMA1-211ENST00000552338 PDZRN3Q9UPQ7 1066 aa11.97□□□□□ -0.49
LIMA1-211ENST00000552338 PNMA6EA0A0J9YXQ4 647 aa11.96□□□□□ -0.49
LIMA1-211ENST00000552338 HMMRO75330 724 aa11.96□□□□□ -0.49
LIMA1-211ENST00000552338 CTSWP56202 376 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms