RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 USP16Q9Y5T5 823 aa19.63■□□□□ 0.73
VPS29-209ENST00000551655 ALDH1B1P30837 517 aa19.62■□□□□ 0.73
VPS29-209ENST00000551655 TPTE2Q6XPS3 522 aa19.62■□□□□ 0.73
VPS29-209ENST00000551655 TCERG1O14776 1098 aaKnown RBP19.61■□□□□ 0.73
VPS29-209ENST00000551655 CLEC4GQ6UXB4 293 aa19.61■□□□□ 0.73
VPS29-209ENST00000551655 DLK2Q6UY11 383 aa19.61■□□□□ 0.73
VPS29-209ENST00000551655 ADARB2Q9NS39 739 aaKnown RBP19.6■□□□□ 0.73
VPS29-209ENST00000551655 GPRC5DQ9NZD1 345 aa19.6■□□□□ 0.73
VPS29-209ENST00000551655 NUTM1Q86Y26 1132 aa19.59■□□□□ 0.73
VPS29-209ENST00000551655 HHIPL1Q96JK4 782 aa19.59■□□□□ 0.73
VPS29-209ENST00000551655 ZNF652Q9Y2D9 606 aa19.59■□□□□ 0.73
VPS29-209ENST00000551655 HLFQ16534 295 aa19.58■□□□□ 0.72
VPS29-209ENST00000551655 NIM1KQ8IY84 436 aa19.58■□□□□ 0.72
VPS29-209ENST00000551655 GNAT3A8MTJ3 354 aa19.56■□□□□ 0.72
VPS29-209ENST00000551655 NBPF26B4DH59 902 aa19.56■□□□□ 0.72
VPS29-209ENST00000551655 GTF2E1P29083 439 aaPredicted RBP19.56■□□□□ 0.72
VPS29-209ENST00000551655 GMPSP49915 693 aaPredicted RBP19.56■□□□□ 0.72
VPS29-209ENST00000551655 HIRAP54198 1017 aaPredicted RBP19.56■□□□□ 0.72
VPS29-209ENST00000551655 NOGQ13253 232 aa19.56■□□□□ 0.72
VPS29-209ENST00000551655 AOC3Q16853 763 aa19.56■□□□□ 0.72
VPS29-209ENST00000551655 CRY2Q49AN0 593 aa19.56■□□□□ 0.72
VPS29-209ENST00000551655 NBPF10Q6P3W6 841 aaKnown RBP19.56■□□□□ 0.72
VPS29-209ENST00000551655 NBPF15Q8N660 670 aa19.56■□□□□ 0.72
VPS29-209ENST00000551655 NPC1L1Q9UHC9 1359 aa19.56■□□□□ 0.72
VPS29-209ENST00000551655 SHTN1A0MZ66 631 aa19.55■□□□□ 0.72
VPS29-209ENST00000551655 PPIP5K2O43314 1243 aa19.55■□□□□ 0.72
VPS29-209ENST00000551655 HUNKP57058 714 aa19.55■□□□□ 0.72
VPS29-209ENST00000551655 TRPM4Q8TD43 1214 aa19.55■□□□□ 0.72
VPS29-209ENST00000551655 BTBD11A6QL63 1104 aa19.54■□□□□ 0.72
VPS29-209ENST00000551655 CXCL9Q07325 125 aa19.54■□□□□ 0.72
VPS29-209ENST00000551655 FAM155AB1AL88 458 aaPredicted RBP19.53■□□□□ 0.72
VPS29-209ENST00000551655 DIAPH1O60610 1272 aaKnown RBP19.53■□□□□ 0.72
VPS29-209ENST00000551655 CC2D2BQ6DHV5 1058 aa19.53■□□□□ 0.72
VPS29-209ENST00000551655 PGAP2Q9UHJ9 254 aa19.53■□□□□ 0.72
VPS29-209ENST00000551655 PPEF1O14829 653 aaPredicted RBP19.52■□□□□ 0.72
VPS29-209ENST00000551655 TRPA1O75762 1119 aa19.52■□□□□ 0.72
VPS29-209ENST00000551655 RPGRQ92834 1020 aaKnown RBP19.52■□□□□ 0.72
VPS29-209ENST00000551655 CEMIPQ8WUJ3 1361 aa19.52■□□□□ 0.72
VPS29-209ENST00000551655 KIF23Q02241 960 aaPredicted RBP19.51■□□□□ 0.71
VPS29-209ENST00000551655 C3orf67Q6ZVT6 689 aa19.51■□□□□ 0.71
VPS29-209ENST00000551655 USP48Q86UV5 1035 aa19.51■□□□□ 0.71
VPS29-209ENST00000551655 RNF186Q9NXI6 227 aa19.51■□□□□ 0.71
VPS29-209ENST00000551655 RIC1Q4ADV7 1423 aa19.51■□□□□ 0.71
VPS29-209ENST00000551655 CDC37L1Q7L3B6 337 aa19.5■□□□□ 0.71
VPS29-209ENST00000551655 GAS2L2Q8NHY3 880 aa19.5■□□□□ 0.71
VPS29-209ENST00000551655 KNSTRNQ9Y448 316 aa19.5■□□□□ 0.71
VPS29-209ENST00000551655 NUP98P52948 1817 aa19.5■□□□□ 0.71
VPS29-209ENST00000551655 AKAP11Q9UKA4 1901 aa19.49■□□□□ 0.71
VPS29-209ENST00000551655 HOXA10P31260 410 aaPredicted RBP19.49■□□□□ 0.71
VPS29-209ENST00000551655 AMER1Q5JTC6 1135 aaPredicted RBP19.49■□□□□ 0.71
VPS29-209ENST00000551655 SAGE1Q9NXZ1 904 aa19.49■□□□□ 0.71
VPS29-209ENST00000551655 U2SURPO15042 1029 aaKnown RBP19.48■□□□□ 0.71
VPS29-209ENST00000551655 RAD17O75943 681 aa19.48■□□□□ 0.71
VPS29-209ENST00000551655 SNRPA1P09661 255 aaKnown RBP19.48■□□□□ 0.71
VPS29-209ENST00000551655 RGMBQ6NW40 437 aa19.48■□□□□ 0.71
VPS29-209ENST00000551655 NGEFQ8N5V2 710 aa19.48■□□□□ 0.71
VPS29-209ENST00000551655 ZNRF3Q9ULT6 936 aa19.48■□□□□ 0.71
VPS29-209ENST00000551655 HPS5Q9UPZ3 1129 aa19.48■□□□□ 0.71
VPS29-209ENST00000551655 COL3A1P02461 1466 aaPredicted RBP19.48■□□□□ 0.71
VPS29-209ENST00000551655 GPTP24298 496 aa19.47■□□□□ 0.71
VPS29-209ENST00000551655 CTU1Q7Z7A3 348 aaKnown RBP19.47■□□□□ 0.71
VPS29-209ENST00000551655 BCL2L13Q9BXK5 485 aa19.47■□□□□ 0.71
VPS29-209ENST00000551655 HSPA5P11021 654 aaKnown RBP19.46■□□□□ 0.71
VPS29-209ENST00000551655 ZC3H15Q8WU90 426 aaKnown RBP19.46■□□□□ 0.71
VPS29-209ENST00000551655 RBM17Q96I25 401 aaKnown RBP19.46■□□□□ 0.71
VPS29-209ENST00000551655 NYXQ9GZU5 481 aa19.46■□□□□ 0.71
VPS29-209ENST00000551655 POLR2AP24928 1970 aaKnown RBP19.46■□□□□ 0.71
VPS29-209ENST00000551655 UBN2Q6ZU65 1347 aa19.46■□□□□ 0.71
VPS29-209ENST00000551655 PHACTR3Q96KR7 559 aa19.45■□□□□ 0.7
VPS29-209ENST00000551655 CRAMP1Q96RY5 1269 aa19.45■□□□□ 0.7
VPS29-209ENST00000551655 KIF7Q2M1P5 1343 aa19.45■□□□□ 0.7
VPS29-209ENST00000551655 ADM5C9JUS6 153 aa19.44■□□□□ 0.7
VPS29-209ENST00000551655 RGL2O15211 777 aa19.44■□□□□ 0.7
VPS29-209ENST00000551655 ZNF157P51786 506 aaPredicted RBP19.44■□□□□ 0.7
VPS29-209ENST00000551655 GRIPAP1Q4V328 841 aa19.44■□□□□ 0.7
VPS29-209ENST00000551655 SUSD4Q5VX71 490 aa19.44■□□□□ 0.7
VPS29-209ENST00000551655 GBA2Q9HCG7 927 aaPredicted RBP19.44■□□□□ 0.7
VPS29-209ENST00000551655 CNOT7Q9UIV1 285 aaKnown RBP19.44■□□□□ 0.7
VPS29-209ENST00000551655 LAMB4A4D0S4 1761 aa19.44■□□□□ 0.7
VPS29-209ENST00000551655 EGFRP00533 1210 aa19.43■□□□□ 0.7
VPS29-209ENST00000551655 SAMD7Q7Z3H4 446 aa19.43■□□□□ 0.7
VPS29-209ENST00000551655 MICALL2Q8IY33 904 aa19.43■□□□□ 0.7
VPS29-209ENST00000551655 CSRNP1Q96S65 589 aa19.43■□□□□ 0.7
VPS29-209ENST00000551655 ZBTB12Q9Y330 459 aaPredicted RBP19.43■□□□□ 0.7
VPS29-209ENST00000551655 YDJCA8MPS7 323 aa19.42■□□□□ 0.7
VPS29-209ENST00000551655 HABP4Q5JVS0 413 aaKnown RBP19.42■□□□□ 0.7
VPS29-209ENST00000551655 TTLL7Q6ZT98 887 aa19.42■□□□□ 0.7
VPS29-209ENST00000551655 MCM10Q7L590 875 aa19.42■□□□□ 0.7
VPS29-209ENST00000551655 ATP6V0A2Q9Y487 856 aa19.42■□□□□ 0.7
VPS29-209ENST00000551655 CDHR2Q9BYE9 1310 aa19.42■□□□□ 0.7
VPS29-209ENST00000551655 MKI67P46013 3256 aaKnown RBP19.42■□□□□ 0.7
VPS29-209ENST00000551655 KRT26Q7Z3Y9 468 aa19.41■□□□□ 0.7
VPS29-209ENST00000551655 CCDC102AQ96A19 550 aa19.41■□□□□ 0.7
VPS29-209ENST00000551655 NTSR2O95665 410 aa19.4■□□□□ 0.7
VPS29-209ENST00000551655 SLC10A3P09131 477 aa19.4■□□□□ 0.7
VPS29-209ENST00000551655 DCTN1Q14203 1278 aa19.4■□□□□ 0.7
VPS29-209ENST00000551655 TBC1D10BQ4KMP7 808 aaPredicted RBP19.4■□□□□ 0.7
VPS29-209ENST00000551655 CC2D1BQ5T0F9 858 aaKnown RBP19.4■□□□□ 0.7
VPS29-209ENST00000551655 C2orf69Q8N8R5 385 aa19.4■□□□□ 0.7
VPS29-209ENST00000551655 RTFDC1Q9BY42 306 aaPredicted RBP19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms