RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 FOXK1P85037 733 aa14.35□□□□□ -0.11
VPS29-208ENST00000550267 AKAP4Q5JQC9 854 aa14.35□□□□□ -0.11
VPS29-208ENST00000550267 H0YIN7 160 aa14.34□□□□□ -0.11
VPS29-208ENST00000550267 PANK3Q9H999 370 aa14.34□□□□□ -0.11
VPS29-208ENST00000550267 PCNTO95613 3336 aa14.33□□□□□ -0.11
VPS29-208ENST00000550267 IL13P35225 146 aa14.33□□□□□ -0.12
VPS29-208ENST00000550267 BICDL1Q6ZP65 573 aa14.33□□□□□ -0.12
VPS29-208ENST00000550267 MORC1Q86VD1 984 aa14.33□□□□□ -0.12
VPS29-208ENST00000550267 GPHNQ9NQX3 736 aaPredicted RBP14.33□□□□□ -0.12
VPS29-208ENST00000550267 MKRN1Q9UHC7 482 aaKnown RBP14.33□□□□□ -0.12
VPS29-208ENST00000550267 MRC1P22897 1456 aa14.32□□□□□ -0.12
VPS29-208ENST00000550267 ARHGAP33O14559 1287 aa14.32□□□□□ -0.12
VPS29-208ENST00000550267 RNMTO43148 476 aaKnown RBP14.32□□□□□ -0.12
VPS29-208ENST00000550267 C21orf2O43822 256 aa14.32□□□□□ -0.12
VPS29-208ENST00000550267 CANXP27824 592 aaKnown RBP14.32□□□□□ -0.12
VPS29-208ENST00000550267 ZNF622Q969S3 477 aaKnown RBP eCLIP14.32□□□□□ -0.12
VPS29-208ENST00000550267 ERFEQ4G0M1 354 aa14.31□□□□□ -0.12
VPS29-208ENST00000550267 CCDC88AQ3V6T2 1871 aa14.31□□□□□ -0.12
VPS29-208ENST00000550267 PLPP6Q8IY26 295 aa14.3□□□□□ -0.12
VPS29-208ENST00000550267 CCDC24Q8N4L8 307 aa14.3□□□□□ -0.12
VPS29-208ENST00000550267 DDNO94850 711 aaPredicted RBP14.29□□□□□ -0.12
VPS29-208ENST00000550267 TBC1D9BQ66K14 1250 aa14.29□□□□□ -0.12
VPS29-208ENST00000550267 VSIG10Q8N0Z9 540 aa14.29□□□□□ -0.12
VPS29-208ENST00000550267 FOXN1O15353 648 aa14.28□□□□□ -0.12
VPS29-208ENST00000550267 HMOX1P09601 288 aa14.28□□□□□ -0.12
VPS29-208ENST00000550267 COL11A2P13942 1736 aaPredicted RBP14.28□□□□□ -0.12
VPS29-208ENST00000550267 EIF5P55010 431 aaKnown RBP14.28□□□□□ -0.12
VPS29-208ENST00000550267 PRR5LQ6MZQ0 368 aa14.28□□□□□ -0.12
VPS29-208ENST00000550267 ANKRD31Q8N7Z5 1873 aa14.28□□□□□ -0.12
VPS29-208ENST00000550267 PDE6BP35913 854 aa14.27□□□□□ -0.13
VPS29-208ENST00000550267 MTHFSDQ2M296 383 aaKnown RBP14.27□□□□□ -0.13
VPS29-208ENST00000550267 BRIP1Q9BX63 1249 aa14.27□□□□□ -0.13
VPS29-208ENST00000550267 CNTNAP1P78357 1384 aa14.26□□□□□ -0.13
VPS29-208ENST00000550267 LTBP3Q9NS15 1303 aa14.26□□□□□ -0.13
VPS29-208ENST00000550267 A0A087WZG4 1122 aa14.26□□□□□ -0.13
VPS29-208ENST00000550267 STARD3NLO95772 234 aa14.26□□□□□ -0.13
VPS29-208ENST00000550267 ADGRD1Q6QNK2 874 aa14.26□□□□□ -0.13
VPS29-208ENST00000550267 TAOK3Q9H2K8 898 aa14.26□□□□□ -0.13
VPS29-208ENST00000550267 PDZRN3Q9UPQ7 1066 aa14.26□□□□□ -0.13
VPS29-208ENST00000550267 UBR2Q8IWV8 1755 aa14.26□□□□□ -0.13
VPS29-208ENST00000550267 FER1L6Q2WGJ9 1857 aa14.25□□□□□ -0.13
VPS29-208ENST00000550267 HSPA5P11021 654 aaKnown RBP14.25□□□□□ -0.13
VPS29-208ENST00000550267 TBC1D2BQ9UPU7 963 aa14.25□□□□□ -0.13
VPS29-208ENST00000550267 ZNF330Q9Y3S2 320 aaPredicted RBP14.25□□□□□ -0.13
VPS29-208ENST00000550267 SCN7AQ01118 1682 aa14.25□□□□□ -0.13
VPS29-208ENST00000550267 DICER1Q9UPY3 1922 aaKnown RBP14.24□□□□□ -0.13
VPS29-208ENST00000550267 TBC1D12O60347 775 aa14.24□□□□□ -0.13
VPS29-208ENST00000550267 DSG2Q14126 1118 aa14.24□□□□□ -0.13
VPS29-208ENST00000550267 TTC5Q8N0Z6 440 aa14.24□□□□□ -0.13
VPS29-208ENST00000550267 PRDM10Q9NQV6 1147 aa14.24□□□□□ -0.13
VPS29-208ENST00000550267 TIMELESSQ9UNS1 1208 aa14.24□□□□□ -0.13
VPS29-208ENST00000550267 VIRMAQ69YN4 1812 aaKnown RBP14.24□□□□□ -0.13
VPS29-208ENST00000550267 PASKQ96RG2 1323 aa14.23□□□□□ -0.13
VPS29-208ENST00000550267 EIF4G2P78344 907 aaKnown RBP eCLIP14.23□□□□□ -0.13
VPS29-208ENST00000550267 PRPF40BQ6NWY9 871 aaKnown RBP14.23□□□□□ -0.13
VPS29-208ENST00000550267 KNSTRNQ9Y448 316 aa14.23□□□□□ -0.13
VPS29-208ENST00000550267 HEG1Q9ULI3 1381 aa14.22□□□□□ -0.13
VPS29-208ENST00000550267 TK2O00142 265 aa14.22□□□□□ -0.13
VPS29-208ENST00000550267 CTCFP49711 727 aaPredicted RBP14.22□□□□□ -0.13
VPS29-208ENST00000550267 VEGFBP49765 207 aa14.22□□□□□ -0.13
VPS29-208ENST00000550267 STYK1Q6J9G0 422 aa14.22□□□□□ -0.13
VPS29-208ENST00000550267 LDHDQ86WU2 507 aa14.22□□□□□ -0.13
VPS29-208ENST00000550267 CNBD1Q8NA66 436 aa14.22□□□□□ -0.13
VPS29-208ENST00000550267 CNKSR1Q969H4 720 aa14.22□□□□□ -0.13
VPS29-208ENST00000550267 ZNF496Q96IT1 587 aaPredicted RBP14.22□□□□□ -0.13
VPS29-208ENST00000550267 TAF1DQ9H5J8 278 aaPredicted RBP14.22□□□□□ -0.13
VPS29-208ENST00000550267 IQCA1LA6NCM1 817 aa14.21□□□□□ -0.13
VPS29-208ENST00000550267 NPHP1O15259 732 aa14.21□□□□□ -0.13
VPS29-208ENST00000550267 A1BGP04217 495 aa14.21□□□□□ -0.13
VPS29-208ENST00000550267 SRGNP10124 158 aa14.21□□□□□ -0.13
VPS29-208ENST00000550267 IL6STP40189 918 aaPredicted RBP14.21□□□□□ -0.13
VPS29-208ENST00000550267 ST5P78524 1137 aa14.21□□□□□ -0.13
VPS29-208ENST00000550267 AIDAQ96BJ3 306 aa14.21□□□□□ -0.13
VPS29-208ENST00000550267 SETDB2Q96T68 719 aa14.21□□□□□ -0.13
VPS29-208ENST00000550267 SLX4Q8IY92 1834 aa14.2□□□□□ -0.14
VPS29-208ENST00000550267 TMEM88BA6NKF7 163 aa14.2□□□□□ -0.14
VPS29-208ENST00000550267 CAMTA2O94983 1202 aa14.2□□□□□ -0.14
VPS29-208ENST00000550267 ITGBL1O95965 494 aaPredicted RBP14.2□□□□□ -0.14
VPS29-208ENST00000550267 EAPPQ56P03 285 aaPredicted RBP14.2□□□□□ -0.14
VPS29-208ENST00000550267 AMER1Q5JTC6 1135 aaPredicted RBP14.2□□□□□ -0.14
VPS29-208ENST00000550267 SOGA3Q5TF21 947 aa14.2□□□□□ -0.14
VPS29-208ENST00000550267 ZNF790Q6PG37 636 aa14.2□□□□□ -0.14
VPS29-208ENST00000550267 MASTLQ96GX5 879 aa14.2□□□□□ -0.14
VPS29-208ENST00000550267 TEX13AQ9BXU3 409 aaPredicted RBP14.2□□□□□ -0.14
VPS29-208ENST00000550267 HCSTQ9UBK5 93 aa14.2□□□□□ -0.14
VPS29-208ENST00000550267 CACNA1SQ13698 1873 aa14.2□□□□□ -0.14
VPS29-208ENST00000550267 LBX1P52954 281 aa14.19□□□□□ -0.14
VPS29-208ENST00000550267 TEFQ10587 303 aa14.19□□□□□ -0.14
VPS29-208ENST00000550267 IL17REQ8NFR9 667 aa14.19□□□□□ -0.14
VPS29-208ENST00000550267 ARFGEF2Q9Y6D5 1785 aa14.19□□□□□ -0.14
VPS29-208ENST00000550267 ZNF541Q9H0D2 1346 aa14.18□□□□□ -0.14
VPS29-208ENST00000550267 DIAPH1O60610 1272 aaKnown RBP14.18□□□□□ -0.14
VPS29-208ENST00000550267 CCDC93Q567U6 631 aa14.18□□□□□ -0.14
VPS29-208ENST00000550267 PPP4R3BQ5MIZ7 849 aa14.18□□□□□ -0.14
VPS29-208ENST00000550267 DZIP3Q86Y13 1208 aaKnown RBP14.18□□□□□ -0.14
VPS29-208ENST00000550267 C7orf43Q8WVR3 580 aa14.18□□□□□ -0.14
VPS29-208ENST00000550267 WBP1LQ9NX94 342 aa14.18□□□□□ -0.14
VPS29-208ENST00000550267 NPM2Q86SE8 214 aaKnown RBP14.17□□□□□ -0.14
VPS29-208ENST00000550267 FMNL2Q96PY5 1086 aa14.17□□□□□ -0.14
VPS29-208ENST00000550267 ZNF277Q9NRM2 450 aaPredicted RBP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms