RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 GPIHBP1Q8IV16 184 aa7.89□□□□□ -1.15
SYNE1-239ENST00000545694 DZIP1LQ8IYY4 767 aaKnown RBP7.89□□□□□ -1.15
SYNE1-239ENST00000545694 SMC4Q9NTJ3 1288 aa7.89□□□□□ -1.15
SYNE1-239ENST00000545694 DDX19BQ9UMR2 479 aa7.89□□□□□ -1.15
SYNE1-239ENST00000545694 LRRC37A3O60309 1634 aa7.89□□□□□ -1.15
SYNE1-239ENST00000545694 TNS3Q68CZ2 1445 aa7.88□□□□□ -1.15
SYNE1-239ENST00000545694 GNAT3A8MTJ3 354 aa7.88□□□□□ -1.15
SYNE1-239ENST00000545694 RPIAP49247 311 aa7.88□□□□□ -1.15
SYNE1-239ENST00000545694 BRICD5Q6PL45 260 aa7.88□□□□□ -1.15
SYNE1-239ENST00000545694 AEBP1Q8IUX7 1158 aa7.88□□□□□ -1.15
SYNE1-239ENST00000545694 SULF1Q8IWU6 871 aa7.88□□□□□ -1.15
SYNE1-239ENST00000545694 FTSJ3Q8IY81 847 aaKnown RBP7.88□□□□□ -1.15
SYNE1-239ENST00000545694 TSR2Q969E8 191 aaKnown RBP7.88□□□□□ -1.15
SYNE1-239ENST00000545694 CLUAP1Q96AJ1 413 aa7.88□□□□□ -1.15
SYNE1-239ENST00000545694 AAASQ9NRG9 546 aa7.88□□□□□ -1.15
SYNE1-239ENST00000545694 CPDO75976 1380 aa7.87□□□□□ -1.15
SYNE1-239ENST00000545694 KDM2BQ8NHM5 1336 aa7.87□□□□□ -1.15
SYNE1-239ENST00000545694 LMO7Q8WWI1 1683 aa7.87□□□□□ -1.15
SYNE1-239ENST00000545694 VAMP4O75379 141 aa7.87□□□□□ -1.15
SYNE1-239ENST00000545694 CD2BP2O95400 341 aaKnown RBP7.87□□□□□ -1.15
SYNE1-239ENST00000545694 HSPA2P54652 639 aa7.87□□□□□ -1.15
SYNE1-239ENST00000545694 MVPQ14764 893 aaKnown RBP7.87□□□□□ -1.15
SYNE1-239ENST00000545694 C20orf194Q5TEA3 1177 aa7.87□□□□□ -1.15
SYNE1-239ENST00000545694 RNF19BQ6ZMZ0 732 aa7.87□□□□□ -1.15
SYNE1-239ENST00000545694 SSH1Q8WYL5 1049 aa7.87□□□□□ -1.15
SYNE1-239ENST00000545694 FRAT1Q92837 279 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-239ENST00000545694 API5Q9BZZ5 524 aaKnown RBP7.87□□□□□ -1.15
SYNE1-239ENST00000545694 MBIPQ9NS73 344 aa7.87□□□□□ -1.15
SYNE1-239ENST00000545694 VIRMAQ69YN4 1812 aaKnown RBP7.87□□□□□ -1.15
SYNE1-239ENST00000545694 PXDNQ92626 1479 aa7.87□□□□□ -1.15
SYNE1-239ENST00000545694 CRB1P82279 1406 aa7.86□□□□□ -1.15
SYNE1-239ENST00000545694 CRYBG1Q9Y4K1 1723 aa7.86□□□□□ -1.15
SYNE1-239ENST00000545694 MAP3K5Q99683 1374 aa7.86□□□□□ -1.15
SYNE1-239ENST00000545694 SPATA31A3Q5VYP0 1347 aa7.86□□□□□ -1.15
SYNE1-239ENST00000545694 MTHFSDQ2M296 383 aaKnown RBP7.86□□□□□ -1.15
SYNE1-239ENST00000545694 TWISTNBQ3B726 338 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-239ENST00000545694 PLEKHO1Q53GL0 409 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-239ENST00000545694 NUTM2GQ5VZR2 741 aa7.86□□□□□ -1.15
SYNE1-239ENST00000545694 PTPRCP08575 1304 aa7.85□□□□□ -1.15
SYNE1-239ENST00000545694 RGPD2P0DJD1 1756 aa7.85□□□□□ -1.15
SYNE1-239ENST00000545694 COL18A1P39060 1754 aa7.85□□□□□ -1.15
SYNE1-239ENST00000545694 HOXB7P09629 217 aa7.85□□□□□ -1.15
SYNE1-239ENST00000545694 RWDD1Q9H446 243 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-239ENST00000545694 DACH1Q9UI36 760 aa7.85□□□□□ -1.15
SYNE1-239ENST00000545694 LAS1LQ9Y4W2 734 aaKnown RBP7.85□□□□□ -1.15
SYNE1-239ENST00000545694 NHSL1Q5SYE7 1610 aa7.85□□□□□ -1.15
SYNE1-239ENST00000545694 RGPD5Q99666 1765 aa7.84□□□□□ -1.15
SYNE1-239ENST00000545694 SOS2Q07890 1332 aaPredicted RBP7.84□□□□□ -1.15
SYNE1-239ENST00000545694 TRIM27P14373 513 aa7.84□□□□□ -1.15
SYNE1-239ENST00000545694 TAF7Q15545 349 aaPredicted RBP7.84□□□□□ -1.15
SYNE1-239ENST00000545694 AKAP4Q5JQC9 854 aa7.84□□□□□ -1.15
SYNE1-239ENST00000545694 CYP4X1Q8N118 509 aa7.84□□□□□ -1.15
SYNE1-239ENST00000545694 SLAIN2Q9P270 581 aa7.84□□□□□ -1.15
SYNE1-239ENST00000545694 NOB1Q9ULX3 412 aaKnown RBP7.84□□□□□ -1.15
SYNE1-239ENST00000545694 COG6Q9Y2V7 657 aa7.84□□□□□ -1.15
SYNE1-239ENST00000545694 CEMIPQ8WUJ3 1361 aa7.84□□□□□ -1.16
SYNE1-239ENST00000545694 ADAMTS7Q9UKP4 1686 aa7.83□□□□□ -1.16
SYNE1-239ENST00000545694 HDAC1Q13547 482 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-239ENST00000545694 NBPF6Q5VWK0 638 aa7.83□□□□□ -1.16
SYNE1-239ENST00000545694 LMOD2Q6P5Q4 547 aa7.83□□□□□ -1.16
SYNE1-239ENST00000545694 BRINP3Q76B58 766 aa7.83□□□□□ -1.16
SYNE1-239ENST00000545694 PANK1Q8TE04 598 aa7.83□□□□□ -1.16
SYNE1-239ENST00000545694 ANKRD24Q8TF21 1146 aa7.83□□□□□ -1.16
SYNE1-239ENST00000545694 NBPF4Q96M43 638 aa7.83□□□□□ -1.16
SYNE1-239ENST00000545694 TOR4AQ9NXH8 423 aa7.83□□□□□ -1.16
SYNE1-239ENST00000545694 TSPYL4Q9UJ04 414 aa7.83□□□□□ -1.16
SYNE1-239ENST00000545694 RBM19Q9Y4C8 960 aaKnown RBP7.83□□□□□ -1.16
SYNE1-239ENST00000545694 ABCC4O15439 1325 aa7.82□□□□□ -1.16
SYNE1-239ENST00000545694 KDM3BQ7LBC6 1761 aa7.82□□□□□ -1.16
SYNE1-239ENST00000545694 FAM83GA6ND36 823 aa7.82□□□□□ -1.16
SYNE1-239ENST00000545694 ZBTB24O43167 697 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-239ENST00000545694 GRIPAP1Q4V328 841 aa7.82□□□□□ -1.16
SYNE1-239ENST00000545694 C1orf141Q5JVX7 400 aa7.82□□□□□ -1.16
SYNE1-239ENST00000545694 MCM10Q7L590 875 aa7.82□□□□□ -1.16
SYNE1-239ENST00000545694 THUMPD2Q9BTF0 503 aaKnown RBP7.82□□□□□ -1.16
SYNE1-239ENST00000545694 N4BP2Q86UW6 1770 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-239ENST00000545694 SCN11AQ9UI33 1791 aa7.82□□□□□ -1.16
SYNE1-239ENST00000545694 HSP90AB1P08238 724 aaKnown RBP7.81□□□□□ -1.16
SYNE1-239ENST00000545694 RLBP1P12271 317 aa7.81□□□□□ -1.16
SYNE1-239ENST00000545694 MSS51Q4VC12 460 aa7.81□□□□□ -1.16
SYNE1-239ENST00000545694 CCDC30Q5VVM6 783 aa7.81□□□□□ -1.16
SYNE1-239ENST00000545694 ITPRIPQ8IWB1 547 aa7.81□□□□□ -1.16
SYNE1-239ENST00000545694 C8orf58Q8NAV2 365 aa7.81□□□□□ -1.16
SYNE1-239ENST00000545694 LTV1Q96GA3 475 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-239ENST00000545694 BCL2L13Q9BXK5 485 aa7.81□□□□□ -1.16
SYNE1-239ENST00000545694 STK31Q9BXU1 1019 aa7.81□□□□□ -1.16
SYNE1-239ENST00000545694 ZBTB40Q9NUA8 1239 aa7.81□□□□□ -1.16
SYNE1-239ENST00000545694 SIPA1L3O60292 1781 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-239ENST00000545694 PKD1L3Q7Z443 1732 aa7.81□□□□□ -1.16
SYNE1-239ENST00000545694 PARP4Q9UKK3 1724 aaKnown RBP7.81□□□□□ -1.16
SYNE1-239ENST00000545694 ZNF335Q9H4Z2 1342 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-239ENST00000545694 TTC24A2A3L6 582 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-239ENST00000545694 CD46P15529 392 aa7.8□□□□□ -1.16
SYNE1-239ENST00000545694 XPCQ01831 940 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-239ENST00000545694 DCTN1Q14203 1278 aa7.8□□□□□ -1.16
SYNE1-239ENST00000545694 INTS3Q68E01 1043 aaKnown RBP7.8□□□□□ -1.16
SYNE1-239ENST00000545694 ZNF530Q6P9A1 599 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-239ENST00000545694 TSPYL6Q8N831 410 aa7.8□□□□□ -1.16
SYNE1-239ENST00000545694 IL17REQ8NFR9 667 aa7.8□□□□□ -1.16
SYNE1-239ENST00000545694 RAPGEF4Q8WZA2 1011 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms