RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 RNF20Q5VTR2 975 aa10.41□□□□□ -0.74
TDP1-204ENST00000545686 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.41□□□□□ -0.74
TDP1-204ENST00000545686 TTC6Q86TZ1 520 aa10.41□□□□□ -0.74
TDP1-204ENST00000545686 SLC26A8Q96RN1 970 aa10.41□□□□□ -0.74
TDP1-204ENST00000545686 DDX19AQ9NUU7 478 aaKnown RBP10.41□□□□□ -0.74
TDP1-204ENST00000545686 DBF4Q9UBU7 674 aaPredicted RBP10.41□□□□□ -0.74
TDP1-204ENST00000545686 NPHP3Q7Z494 1330 aa10.41□□□□□ -0.74
TDP1-204ENST00000545686 MED23Q9ULK4 1368 aa10.4□□□□□ -0.74
TDP1-204ENST00000545686 NPHP4O75161 1426 aaPredicted RBP10.4□□□□□ -0.74
TDP1-204ENST00000545686 EIF2S2P20042 333 aaKnown RBP10.4□□□□□ -0.74
TDP1-204ENST00000545686 LARP1BQ659C4 914 aaKnown RBP10.4□□□□□ -0.74
TDP1-204ENST00000545686 LARP6Q9BRS8 491 aaKnown RBP10.4□□□□□ -0.74
TDP1-204ENST00000545686 HMG20BQ9P0W2 317 aa10.4□□□□□ -0.74
TDP1-204ENST00000545686 CAVIN2O95810 425 aa10.4□□□□□ -0.75
TDP1-204ENST00000545686 TYRO3Q06418 890 aa10.4□□□□□ -0.75
TDP1-204ENST00000545686 C17orf53Q8N3J3 647 aaPredicted RBP10.4□□□□□ -0.75
TDP1-204ENST00000545686 TPCN1Q9ULQ1 816 aa10.4□□□□□ -0.75
TDP1-204ENST00000545686 MRVI1Q9Y6F6 885 aa10.4□□□□□ -0.75
TDP1-204ENST00000545686 UTYO14607 1347 aa10.4□□□□□ -0.75
TDP1-204ENST00000545686 FER1L4A9Z1Z3 1794 aa10.39□□□□□ -0.75
TDP1-204ENST00000545686 SLC27A2O14975 620 aa10.39□□□□□ -0.75
TDP1-204ENST00000545686 CTIFO43310 598 aaKnown RBP10.39□□□□□ -0.75
TDP1-204ENST00000545686 TSGA10IPQ3SY00 556 aa10.39□□□□□ -0.75
TDP1-204ENST00000545686 MPNDQ8N594 471 aa10.39□□□□□ -0.75
TDP1-204ENST00000545686 IP6K1Q92551 441 aa10.39□□□□□ -0.75
TDP1-204ENST00000545686 BCL2L12Q9HB09 334 aa10.39□□□□□ -0.75
TDP1-204ENST00000545686 PYCARDQ9ULZ3 195 aa10.39□□□□□ -0.75
TDP1-204ENST00000545686 RFX7Q2KHR2 1363 aa10.39□□□□□ -0.75
TDP1-204ENST00000545686 HEG1Q9ULI3 1381 aa10.39□□□□□ -0.75
TDP1-204ENST00000545686 AFDNP55196 1824 aaKnown RBP10.39□□□□□ -0.75
TDP1-204ENST00000545686 GIGYF1O75420 1035 aaPredicted RBP10.39□□□□□ -0.75
TDP1-204ENST00000545686 PLCB2Q00722 1185 aa10.39□□□□□ -0.75
TDP1-204ENST00000545686 SYCP1Q15431 976 aa10.39□□□□□ -0.75
TDP1-204ENST00000545686 AKAP4Q5JQC9 854 aa10.39□□□□□ -0.75
TDP1-204ENST00000545686 BLOC1S2Q6QNY1 142 aa10.39□□□□□ -0.75
TDP1-204ENST00000545686 KSR2Q6VAB6 950 aa10.39□□□□□ -0.75
TDP1-204ENST00000545686 CDC37L1Q7L3B6 337 aa10.39□□□□□ -0.75
TDP1-204ENST00000545686 ANKRD7Q92527 254 aa10.39□□□□□ -0.75
TDP1-204ENST00000545686 C9orf78Q9NZ63 289 aaPredicted RBP10.39□□□□□ -0.75
TDP1-204ENST00000545686 RPS6KB1P23443 525 aa10.38□□□□□ -0.75
TDP1-204ENST00000545686 KCNJ4P48050 445 aa10.38□□□□□ -0.75
TDP1-204ENST00000545686 TEFQ10587 303 aa10.38□□□□□ -0.75
TDP1-204ENST00000545686 AACSQ86V21 672 aa10.38□□□□□ -0.75
TDP1-204ENST00000545686 ABTB2Q8N961 1025 aa10.38□□□□□ -0.75
TDP1-204ENST00000545686 TDRD7Q8NHU6 1098 aaKnown RBP10.38□□□□□ -0.75
TDP1-204ENST00000545686 TNMDQ9H2S6 317 aa10.38□□□□□ -0.75
TDP1-204ENST00000545686 LIG1P18858 919 aa10.38□□□□□ -0.75
TDP1-204ENST00000545686 DMTNQ08495 405 aa10.38□□□□□ -0.75
TDP1-204ENST00000545686 NMIQ13287 307 aaPredicted RBP10.38□□□□□ -0.75
TDP1-204ENST00000545686 NECAB1Q8N987 351 aa10.38□□□□□ -0.75
TDP1-204ENST00000545686 LTV1Q96GA3 475 aaPredicted RBP10.38□□□□□ -0.75
TDP1-204ENST00000545686 CLSTN2Q9H4D0 955 aa10.38□□□□□ -0.75
TDP1-204ENST00000545686 SCN11AQ9UI33 1791 aa10.37□□□□□ -0.75
TDP1-204ENST00000545686 C5P01031 1676 aa10.37□□□□□ -0.75
TDP1-204ENST00000545686 BTBD11A6QL63 1104 aa10.37□□□□□ -0.75
TDP1-204ENST00000545686 RIOK3O14730 519 aaKnown RBP10.37□□□□□ -0.75
TDP1-204ENST00000545686 CDC25BP30305 580 aa10.37□□□□□ -0.75
TDP1-204ENST00000545686 SPATA32Q96LK8 384 aa10.37□□□□□ -0.75
TDP1-204ENST00000545686 MAP3K2Q9Y2U5 619 aa10.37□□□□□ -0.75
TDP1-204ENST00000545686 GOLGA6L4A6NEF3 574 aa10.36□□□□□ -0.75
TDP1-204ENST00000545686 KRT32Q14532 448 aa10.36□□□□□ -0.75
TDP1-204ENST00000545686 AMOTQ4VCS5 1084 aa10.36□□□□□ -0.75
TDP1-204ENST00000545686 PLA2G4DQ86XP0 818 aa10.36□□□□□ -0.75
TDP1-204ENST00000545686 USHBP1Q8N6Y0 703 aa10.36□□□□□ -0.75
TDP1-204ENST00000545686 SPC24Q8NBT2 197 aa10.36□□□□□ -0.75
TDP1-204ENST00000545686 LINS1Q8NG48 757 aa10.36□□□□□ -0.75
TDP1-204ENST00000545686 LEO1Q8WVC0 666 aaPredicted RBP10.36□□□□□ -0.75
TDP1-204ENST00000545686 LGR6Q9HBX8 967 aa10.36□□□□□ -0.75
TDP1-204ENST00000545686 CBX8Q9HC52 389 aa10.36□□□□□ -0.75
TDP1-204ENST00000545686 GRM8O00222 908 aa10.36□□□□□ -0.75
TDP1-204ENST00000545686 G3BP1Q13283 466 aaKnown RBP eCLIP10.36□□□□□ -0.75
TDP1-204ENST00000545686 TPRNQ4KMQ1 711 aa10.36□□□□□ -0.75
TDP1-204ENST00000545686 PDCL2Q8N4E4 241 aa10.36□□□□□ -0.75
TDP1-204ENST00000545686 FAM227BQ96M60 508 aa10.36□□□□□ -0.75
TDP1-204ENST00000545686 GTPBP4Q9BZE4 634 aaKnown RBP10.36□□□□□ -0.75
TDP1-204ENST00000545686 DACT1Q9NYF0 836 aa10.36□□□□□ -0.75
TDP1-204ENST00000545686 SASH1O94885 1247 aa10.35□□□□□ -0.75
TDP1-204ENST00000545686 PTGS1P23219 599 aa10.35□□□□□ -0.75
TDP1-204ENST00000545686 ZNF75DP51815 510 aa10.35□□□□□ -0.75
TDP1-204ENST00000545686 TOB2Q14106 344 aaPredicted RBP10.35□□□□□ -0.75
TDP1-204ENST00000545686 ANO6Q4KMQ2 910 aa10.35□□□□□ -0.75
TDP1-204ENST00000545686 PLEKHO1Q53GL0 409 aaPredicted RBP10.35□□□□□ -0.75
TDP1-204ENST00000545686 USPL1Q5W0Q7 1092 aa10.35□□□□□ -0.75
TDP1-204ENST00000545686 PA2G4Q9UQ80 394 aaKnown RBP10.35□□□□□ -0.75
TDP1-204ENST00000545686 PXDNQ92626 1479 aa10.35□□□□□ -0.75
TDP1-204ENST00000545686 A0A0D9SFI3 127 aa10.35□□□□□ -0.75
TDP1-204ENST00000545686 SMTNL1A8MU46 457 aa10.35□□□□□ -0.75
TDP1-204ENST00000545686 DDX58O95786 925 aaKnown RBP10.35□□□□□ -0.75
TDP1-204ENST00000545686 ZSCAN20P17040 1043 aaPredicted RBP10.35□□□□□ -0.75
TDP1-204ENST00000545686 PPP4R3BQ5MIZ7 849 aa10.35□□□□□ -0.75
TDP1-204ENST00000545686 NBPF6Q5VWK0 638 aa10.35□□□□□ -0.75
TDP1-204ENST00000545686 ZNF530Q6P9A1 599 aaPredicted RBP10.35□□□□□ -0.75
TDP1-204ENST00000545686 LUZP1Q86V48 1076 aa10.35□□□□□ -0.75
TDP1-204ENST00000545686 TSC1Q92574 1164 aa10.35□□□□□ -0.75
TDP1-204ENST00000545686 NBPF4Q96M43 638 aa10.35□□□□□ -0.75
TDP1-204ENST00000545686 FSD1Q9BTV5 496 aa10.35□□□□□ -0.75
TDP1-204ENST00000545686 SLIT3O75094 1523 aa10.35□□□□□ -0.75
TDP1-204ENST00000545686 ZBTB7CA1YPR0 619 aa10.34□□□□□ -0.75
TDP1-204ENST00000545686 KCNQ3O43525 872 aa10.34□□□□□ -0.75
TDP1-204ENST00000545686 NUTM2GQ5VZR2 741 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 911.7 ms