RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 VPS53Q5VIR6 699 aa6.81□□□□□ -1.32
VPS50-220ENST00000544910 ANKRD13DQ6ZTN6 518 aa6.81□□□□□ -1.32
VPS50-220ENST00000544910 SDF4Q9BRK5 362 aa6.81□□□□□ -1.32
VPS50-220ENST00000544910 BICC1Q9H694 974 aaKnown RBP6.81□□□□□ -1.32
VPS50-220ENST00000544910 KDRP35968 1356 aa6.81□□□□□ -1.32
VPS50-220ENST00000544910 SART3Q15020 963 aaKnown RBP6.81□□□□□ -1.32
VPS50-220ENST00000544910 CWF19L2Q2TBE0 894 aaKnown RBP6.81□□□□□ -1.32
VPS50-220ENST00000544910 LINS1Q8NG48 757 aa6.81□□□□□ -1.32
VPS50-220ENST00000544910 RASSF8Q8NHQ8 419 aa6.81□□□□□ -1.32
VPS50-220ENST00000544910 EPB41L2O43491 1005 aaKnown RBP6.81□□□□□ -1.32
VPS50-220ENST00000544910 DDX11Q96FC9 970 aa6.81□□□□□ -1.32
VPS50-220ENST00000544910 LGR6Q9HBX8 967 aa6.81□□□□□ -1.32
VPS50-220ENST00000544910 ME1P48163 572 aa6.81□□□□□ -1.32
VPS50-220ENST00000544910 RUFY3Q7L099 469 aa6.81□□□□□ -1.32
VPS50-220ENST00000544910 CPS1P31327 1500 aa6.81□□□□□ -1.32
VPS50-220ENST00000544910 CDKL5O76039 1030 aa6.8□□□□□ -1.32
VPS50-220ENST00000544910 STARD3NLO95772 234 aa6.8□□□□□ -1.32
VPS50-220ENST00000544910 SLC39A6Q13433 755 aa6.8□□□□□ -1.32
VPS50-220ENST00000544910 NBPF6Q5VWK0 638 aa6.8□□□□□ -1.32
VPS50-220ENST00000544910 FERMT3Q86UX7 667 aa6.8□□□□□ -1.32
VPS50-220ENST00000544910 AMOTL1Q8IY63 956 aa6.8□□□□□ -1.32
VPS50-220ENST00000544910 NBPF4Q96M43 638 aa6.8□□□□□ -1.32
VPS50-220ENST00000544910 NEK1Q96PY6 1258 aa6.8□□□□□ -1.32
VPS50-220ENST00000544910 SIGLEC1Q9BZZ2 1709 aa6.8□□□□□ -1.32
VPS50-220ENST00000544910 COPS6Q7L5N1 327 aa6.8□□□□□ -1.32
VPS50-220ENST00000544910 UBE3BQ7Z3V4 1068 aa6.8□□□□□ -1.32
VPS50-220ENST00000544910 IL17REQ8NFR9 667 aa6.8□□□□□ -1.32
VPS50-220ENST00000544910 SNX14Q9Y5W7 946 aa6.8□□□□□ -1.32
VPS50-220ENST00000544910 CD163L1Q9NR16 1453 aa6.8□□□□□ -1.32
VPS50-220ENST00000544910 ATP5J2-PTCD1G3V325 749 aa6.8□□□□□ -1.32
VPS50-220ENST00000544910 PTCD1O75127 700 aaKnown RBP6.8□□□□□ -1.32
VPS50-220ENST00000544910 DIP2BQ9P265 1576 aa6.8□□□□□ -1.32
VPS50-220ENST00000544910 CCDC69A6NI79 296 aa6.8□□□□□ -1.32
VPS50-220ENST00000544910 KDM4AO75164 1064 aa6.8□□□□□ -1.32
VPS50-220ENST00000544910 PRIM1P49642 420 aaKnown RBP6.8□□□□□ -1.32
VPS50-220ENST00000544910 CREB3L3Q68CJ9 461 aa6.8□□□□□ -1.32
VPS50-220ENST00000544910 BRMS1Q9HCU9 246 aa6.8□□□□□ -1.32
VPS50-220ENST00000544910 SMC2O95347 1197 aa6.79□□□□□ -1.32
VPS50-220ENST00000544910 XBP1P17861 261 aa6.79□□□□□ -1.32
VPS50-220ENST00000544910 OSBPL3Q9H4L5 887 aa6.79□□□□□ -1.32
VPS50-220ENST00000544910 DDX19AQ9NUU7 478 aaKnown RBP6.79□□□□□ -1.32
VPS50-220ENST00000544910 GOLIM4O00461 696 aa6.79□□□□□ -1.32
VPS50-220ENST00000544910 METTL24Q5JXM2 366 aa6.79□□□□□ -1.32
VPS50-220ENST00000544910 NOL10Q9BSC4 688 aaKnown RBP6.79□□□□□ -1.32
VPS50-220ENST00000544910 NECAB1Q8N987 351 aa6.79□□□□□ -1.32
VPS50-220ENST00000544910 SSH3Q8TE77 659 aa6.79□□□□□ -1.32
VPS50-220ENST00000544910 JARID2Q92833 1246 aaPredicted RBP6.79□□□□□ -1.32
VPS50-220ENST00000544910 SGSM2O43147 1006 aa6.79□□□□□ -1.32
VPS50-220ENST00000544910 HSPA4P34932 840 aa6.79□□□□□ -1.32
VPS50-220ENST00000544910 ZNF445P59923 1031 aa6.79□□□□□ -1.32
VPS50-220ENST00000544910 DHX8Q14562 1220 aaKnown RBP6.79□□□□□ -1.32
VPS50-220ENST00000544910 JMYQ8N9B5 988 aa6.79□□□□□ -1.32
VPS50-220ENST00000544910 DDX21Q9NR30 783 aaKnown RBP eCLIP6.79□□□□□ -1.32
VPS50-220ENST00000544910 LMBRD1Q9NUN5 540 aa6.79□□□□□ -1.32
VPS50-220ENST00000544910 USP25Q9UHP3 1055 aa6.79□□□□□ -1.32
VPS50-220ENST00000544910 NRKQ7Z2Y5 1582 aa6.79□□□□□ -1.32
VPS50-220ENST00000544910 ADCY5O95622 1261 aa6.79□□□□□ -1.32
VPS50-220ENST00000544910 TPM1P09493 284 aa6.79□□□□□ -1.32
VPS50-220ENST00000544910 MCMDC2Q4G0Z9 681 aa6.79□□□□□ -1.32
VPS50-220ENST00000544910 CREBRFQ8IUR6 639 aa6.79□□□□□ -1.32
VPS50-220ENST00000544910 MPNDQ8N594 471 aa6.79□□□□□ -1.32
VPS50-220ENST00000544910 TSPYL1Q9H0U9 437 aa6.79□□□□□ -1.32
VPS50-220ENST00000544910 MYO5BQ9ULV0 1848 aa6.79□□□□□ -1.32
VPS50-220ENST00000544910 RGS12O14924 1447 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 CCDC171Q6TFL3 1326 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 NPHP3Q7Z494 1330 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 USP31Q70CQ4 1352 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 NBPF7P0C2Y1 421 aaPredicted RBP6.78□□□□□ -1.32
VPS50-220ENST00000544910 RBM10P98175 930 aaKnown RBP6.78□□□□□ -1.32
VPS50-220ENST00000544910 CHRNA2Q15822 529 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 HS1BP3Q53T59 392 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 NFATC2IPQ8NCF5 419 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 DCAF5Q96JK2 942 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 NACAP1Q9BZK3 213 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 FAM177BA6PVY3 158 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 TFCP2Q12800 502 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 IFIT5Q13325 482 aaKnown RBP6.78□□□□□ -1.32
VPS50-220ENST00000544910 HSP90AB3PQ58FF7 597 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 CCDC85AQ96PX6 553 aaPredicted RBP6.78□□□□□ -1.32
VPS50-220ENST00000544910 USP44Q9H0E7 712 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 ZBTB3Q9H5J0 574 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 GNL3LQ9NVN8 582 aaKnown RBP6.78□□□□□ -1.32
VPS50-220ENST00000544910 CTAGE5O15320 804 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 CCP110O43303 1012 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 CD2BP2O95400 341 aaKnown RBP6.78□□□□□ -1.32
VPS50-220ENST00000544910 HOMER1Q86YM7 354 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 CEP57L1Q8IYX8 460 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 METTL22Q9BUU2 404 aaPredicted RBP6.78□□□□□ -1.32
VPS50-220ENST00000544910 SLC52A2Q9HAB3 445 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 STAP2Q9UGK3 403 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 OVOS2A0A0J9YW53 1432 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 OVOS2Q6IE36 1432 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 RRP12Q5JTH9 1297 aaKnown RBP6.78□□□□□ -1.32
VPS50-220ENST00000544910 BEND3Q5T5X7 828 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 CADPS2Q86UW7 1296 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 SUCLG2Q96I99 432 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 TEX13AQ9BXU3 409 aaPredicted RBP6.78□□□□□ -1.32
VPS50-220ENST00000544910 PDCL3Q9H2J4 239 aa6.78□□□□□ -1.32
VPS50-220ENST00000544910 RRAGDQ9NQL2 400 aaPredicted RBP6.78□□□□□ -1.32
VPS50-220ENST00000544910 DIP2AQ14689 1571 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms