RNA–Protein interactions for RNA: ENST00000543744.1

PTPN6-222, Transcript of protein tyrosine phosphatase, non-receptor type 6, humanhuman

TSL 1 (best)

Gene PTPN6, Length 2,043 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6-222ENST00000543744 CHAMP1Q96JM3 812 aa21.42■■□□□ 1.02
PTPN6-222ENST00000543744 CCDC171Q6TFL3 1326 aa21.42■■□□□ 1.02
PTPN6-222ENST00000543744 NMIQ13287 307 aaPredicted RBP21.41■■□□□ 1.02
PTPN6-222ENST00000543744 RABL6Q3YEC7 729 aaPredicted RBP21.41■■□□□ 1.02
PTPN6-222ENST00000543744 GPT2Q8TD30 523 aa21.41■■□□□ 1.02
PTPN6-222ENST00000543744 KCNB2Q92953 911 aa21.41■■□□□ 1.02
PTPN6-222ENST00000543744 ERVV-2B6SEH9 535 aa21.41■■□□□ 1.02
PTPN6-222ENST00000543744 RFX5P48382 616 aaPredicted RBP21.41■■□□□ 1.02
PTPN6-222ENST00000543744 PTPN12Q05209 780 aaKnown RBP21.41■■□□□ 1.02
PTPN6-222ENST00000543744 ZSCAN23Q3MJ62 389 aa21.41■■□□□ 1.02
PTPN6-222ENST00000543744 RUFY3Q7L099 469 aa21.41■■□□□ 1.02
PTPN6-222ENST00000543744 FAM227BQ96M60 508 aa21.41■■□□□ 1.02
PTPN6-222ENST00000543744 FSD1Q9BTV5 496 aa21.41■■□□□ 1.02
PTPN6-222ENST00000543744 WDR33Q9C0J8 1336 aaKnown RBP21.41■■□□□ 1.02
PTPN6-222ENST00000543744 XIRP1Q702N8 1843 aaKnown RBP21.4■■□□□ 1.02
PTPN6-222ENST00000543744 ZKSCAN1P17029 563 aaPredicted RBP21.4■■□□□ 1.02
PTPN6-222ENST00000543744 JAKMIP1Q96N16 626 aaKnown RBP21.4■■□□□ 1.02
PTPN6-222ENST00000543744 TM6SF1Q9BZW5 370 aa21.4■■□□□ 1.02
PTPN6-222ENST00000543744 SLAIN2Q9P270 581 aa21.4■■□□□ 1.02
PTPN6-222ENST00000543744 SOS2Q07890 1332 aaPredicted RBP21.4■■□□□ 1.02
PTPN6-222ENST00000543744 NECTIN1Q15223 517 aa21.39■■□□□ 1.02
PTPN6-222ENST00000543744 NBPF26B4DH59 902 aa21.39■■□□□ 1.01
PTPN6-222ENST00000543744 KCNJ4P48050 445 aa21.39■■□□□ 1.01
PTPN6-222ENST00000543744 NBPF14Q5TI25 921 aa21.39■■□□□ 1.01
PTPN6-222ENST00000543744 VPS53Q5VIR6 699 aa21.39■■□□□ 1.01
PTPN6-222ENST00000543744 NBPF10Q6P3W6 841 aaKnown RBP21.39■■□□□ 1.01
PTPN6-222ENST00000543744 NBPF15Q8N660 670 aa21.39■■□□□ 1.01
PTPN6-222ENST00000543744 SNRKQ9NRH2 765 aa21.39■■□□□ 1.01
PTPN6-222ENST00000543744 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.39■■□□□ 1.01
PTPN6-222ENST00000543744 LAMB4A4D0S4 1761 aa21.39■■□□□ 1.01
PTPN6-222ENST00000543744 ARFGEF2Q9Y6D5 1785 aa21.39■■□□□ 1.01
PTPN6-222ENST00000543744 GLI3P10071 1580 aa21.39■■□□□ 1.01
PTPN6-222ENST00000543744 CPA1P15085 419 aa21.38■■□□□ 1.01
PTPN6-222ENST00000543744 MAP4K1Q92918 833 aa21.38■■□□□ 1.01
PTPN6-222ENST00000543744 ZSWIM6Q9HCJ5 1215 aa21.38■■□□□ 1.01
PTPN6-222ENST00000543744 PDRG1Q9NUG6 133 aa21.38■■□□□ 1.01
PTPN6-222ENST00000543744 RBM8AQ9Y5S9 174 aaKnown RBP21.38■■□□□ 1.01
PTPN6-222ENST00000543744 CYP46A1Q9Y6A2 500 aa21.38■■□□□ 1.01
PTPN6-222ENST00000543744 COL5A2P05997 1499 aaPredicted RBP21.38■■□□□ 1.01
PTPN6-222ENST00000543744 AFDNP55196 1824 aaKnown RBP21.38■■□□□ 1.01
PTPN6-222ENST00000543744 MBD3O95983 291 aa21.38■■□□□ 1.01
PTPN6-222ENST00000543744 TFCP2Q12800 502 aa21.38■■□□□ 1.01
PTPN6-222ENST00000543744 ADCK5Q3MIX3 580 aa21.38■■□□□ 1.01
PTPN6-222ENST00000543744 TNNI3KQ59H18 835 aa21.38■■□□□ 1.01
PTPN6-222ENST00000543744 FPGT-TNNI3KV9GXZ4 949 aa21.38■■□□□ 1.01
PTPN6-222ENST00000543744 IL2RBP14784 551 aa21.37■■□□□ 1.01
PTPN6-222ENST00000543744 CASP7P55210 303 aa21.37■■□□□ 1.01
PTPN6-222ENST00000543744 NKX1-1Q15270 411 aaPredicted RBP21.37■■□□□ 1.01
PTPN6-222ENST00000543744 LARP6Q9BRS8 491 aaKnown RBP21.37■■□□□ 1.01
PTPN6-222ENST00000543744 ATP5JP18859 108 aa21.36■■□□□ 1.01
PTPN6-222ENST00000543744 NASPP49321 788 aaPredicted RBP21.36■■□□□ 1.01
PTPN6-222ENST00000543744 CREB3L3Q68CJ9 461 aa21.36■■□□□ 1.01
PTPN6-222ENST00000543744 CARD10Q9BWT7 1032 aa21.36■■□□□ 1.01
PTPN6-222ENST00000543744 DBNLQ9UJU6 430 aaKnown RBP21.36■■□□□ 1.01
PTPN6-222ENST00000543744 A0A0D9SFI3 127 aa21.36■■□□□ 1.01
PTPN6-222ENST00000543744 LMBR1LQ6UX01 489 aa21.35■■□□□ 1.01
PTPN6-222ENST00000543744 DDX54Q8TDD1 881 aaKnown RBP21.35■■□□□ 1.01
PTPN6-222ENST00000543744 ZSCAN31Q96LW9 406 aaPredicted RBP21.35■■□□□ 1.01
PTPN6-222ENST00000543744 RRAGDQ9NQL2 400 aaPredicted RBP21.35■■□□□ 1.01
PTPN6-222ENST00000543744 RBM27Q9P2N5 1060 aaKnown RBP21.35■■□□□ 1.01
PTPN6-222ENST00000543744 H7C1W4 665 aa21.34■■□□□ 1.01
PTPN6-222ENST00000543744 DNAJC5Q9H3Z4 198 aa21.34■■□□□ 1.01
PTPN6-222ENST00000543744 SMC3Q9UQE7 1217 aa21.34■■□□□ 1.01
PTPN6-222ENST00000543744 RPAP1Q9BWH6 1393 aaPredicted RBP21.34■■□□□ 1.01
PTPN6-222ENST00000543744 RNF20Q5VTR2 975 aa21.34■■□□□ 1.01
PTPN6-222ENST00000543744 TTLL7Q6ZT98 887 aa21.34■■□□□ 1.01
PTPN6-222ENST00000543744 CWC25Q9NXE8 425 aaPredicted RBP21.34■■□□□ 1.01
PTPN6-222ENST00000543744 MED23Q9ULK4 1368 aa21.33■■□□□ 1.01
PTPN6-222ENST00000543744 A1BGP04217 495 aa21.33■■□□□ 1.01
PTPN6-222ENST00000543744 ANP32BQ92688 251 aaKnown RBP21.33■■□□□ 1.01
PTPN6-222ENST00000543744 SH2B1Q9NRF2 756 aaPredicted RBP21.33■■□□□ 1.01
PTPN6-222ENST00000543744 SLC27A2O14975 620 aa21.33■■□□□ 1
PTPN6-222ENST00000543744 PSMA5P28066 241 aa21.33■■□□□ 1
PTPN6-222ENST00000543744 FOXO4P98177 505 aa21.33■■□□□ 1
PTPN6-222ENST00000543744 STRN4Q9NRL3 753 aa21.33■■□□□ 1
PTPN6-222ENST00000543744 TMEM63CQ9P1W3 806 aa21.33■■□□□ 1
PTPN6-222ENST00000543744 NSFL1CQ9UNZ2 370 aaKnown RBP21.33■■□□□ 1
PTPN6-222ENST00000543744 CHMP3Q9Y3E7 222 aa21.33■■□□□ 1
PTPN6-222ENST00000543744 LARGE1O95461 756 aa21.32■■□□□ 1
PTPN6-222ENST00000543744 EVA1CP58658 441 aa21.32■■□□□ 1
PTPN6-222ENST00000543744 FOXD4L6Q3SYB3 417 aaPredicted RBP21.32■■□□□ 1
PTPN6-222ENST00000543744 FOXD4L3Q6VB84 417 aaPredicted RBP21.32■■□□□ 1
PTPN6-222ENST00000543744 KCPQ6ZWJ8 1503 aa21.31■■□□□ 1
PTPN6-222ENST00000543744 ZSCAN22P10073 491 aaPredicted RBP21.31■■□□□ 1
PTPN6-222ENST00000543744 TRIM44Q96DX7 344 aaPredicted RBP21.31■■□□□ 1
PTPN6-222ENST00000543744 EDC3Q96F86 508 aaKnown RBP21.31■■□□□ 1
PTPN6-222ENST00000543744 UBR2Q8IWV8 1755 aa21.31■■□□□ 1
PTPN6-222ENST00000543744 STX6O43752 255 aa21.31■■□□□ 1
PTPN6-222ENST00000543744 SYT1P21579 422 aa21.31■■□□□ 1
PTPN6-222ENST00000543744 CCDC83Q8IWF9 413 aa21.31■■□□□ 1
PTPN6-222ENST00000543744 DBNDD2Q9BQY9 259 aa21.31■■□□□ 1
PTPN6-222ENST00000543744 ZNF335Q9H4Z2 1342 aaPredicted RBP21.3■■□□□ 1
PTPN6-222ENST00000543744 CCDC173Q0VFZ6 552 aa21.3■■□□□ 1
PTPN6-222ENST00000543744 ZBTB3Q9H5J0 574 aa21.3■■□□□ 1
PTPN6-222ENST00000543744 PRIM1P49642 420 aaKnown RBP21.29■■□□□ 1
PTPN6-222ENST00000543744 ZNF589Q86UQ0 364 aaPredicted RBP21.29■■□□□ 1
PTPN6-222ENST00000543744 CCDC191Q8NCU4 936 aa21.29■■□□□ 1
PTPN6-222ENST00000543744 DNAJC2Q99543 621 aaKnown RBP21.29■■□□□ 1
PTPN6-222ENST00000543744 HMG20BQ9P0W2 317 aa21.29■■□□□ 1
PTPN6-222ENST00000543744 TAF5LO75529 589 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms