RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 ZBTB1Q9Y2K1 713 aa6.61□□□□□ -1.35
LIMS1-214ENST00000542845 TLL2Q9Y6L7 1015 aa6.61□□□□□ -1.35
LIMS1-214ENST00000542845 COL11A2P13942 1736 aaPredicted RBP6.61□□□□□ -1.35
LIMS1-214ENST00000542845 LTBP1Q14766 1721 aa6.61□□□□□ -1.35
LIMS1-214ENST00000542845 PDE4DIPQ5VU43 2346 aa6.6□□□□□ -1.35
LIMS1-214ENST00000542845 KIF24Q5T7B8 1368 aa6.6□□□□□ -1.35
LIMS1-214ENST00000542845 WASHC2AQ641Q2 1341 aa6.6□□□□□ -1.35
LIMS1-214ENST00000542845 CELF2O95319 508 aaKnown RBP6.6□□□□□ -1.35
LIMS1-214ENST00000542845 EPS15P42566 896 aa6.6□□□□□ -1.35
LIMS1-214ENST00000542845 FKBP4Q02790 459 aaKnown RBP eCLIP6.6□□□□□ -1.35
LIMS1-214ENST00000542845 EIF4A2Q14240 407 aaKnown RBP6.6□□□□□ -1.35
LIMS1-214ENST00000542845 CCDC93Q567U6 631 aa6.6□□□□□ -1.35
LIMS1-214ENST00000542845 RASEFQ8IZ41 740 aa6.6□□□□□ -1.35
LIMS1-214ENST00000542845 FAM163AQ96GL9 167 aaPredicted RBP6.6□□□□□ -1.35
LIMS1-214ENST00000542845 MASTLQ96GX5 879 aa6.6□□□□□ -1.35
LIMS1-214ENST00000542845 PDZRN3Q9UPQ7 1066 aa6.6□□□□□ -1.35
LIMS1-214ENST00000542845 TBC1D2BQ9UPU7 963 aa6.6□□□□□ -1.35
LIMS1-214ENST00000542845 ADAMTSL1Q8N6G6 1762 aa6.59□□□□□ -1.35
LIMS1-214ENST00000542845 SRGNP10124 158 aa6.59□□□□□ -1.35
LIMS1-214ENST00000542845 IARSP41252 1262 aaKnown RBP6.59□□□□□ -1.35
LIMS1-214ENST00000542845 EIF6P56537 245 aaKnown RBP6.59□□□□□ -1.35
LIMS1-214ENST00000542845 ST5P78524 1137 aa6.59□□□□□ -1.35
LIMS1-214ENST00000542845 STYK1Q6J9G0 422 aa6.59□□□□□ -1.35
LIMS1-214ENST00000542845 GPC2Q8N158 579 aa6.59□□□□□ -1.35
LIMS1-214ENST00000542845 SYNE4Q8N205 404 aa6.59□□□□□ -1.35
LIMS1-214ENST00000542845 NBPF15Q8N660 670 aa6.59□□□□□ -1.35
LIMS1-214ENST00000542845 CNBD1Q8NA66 436 aa6.59□□□□□ -1.35
LIMS1-214ENST00000542845 JDP2Q8WYK2 163 aa6.59□□□□□ -1.35
LIMS1-214ENST00000542845 GCC1Q96CN9 775 aa6.59□□□□□ -1.35
LIMS1-214ENST00000542845 ZIC5Q96T25 663 aa6.59□□□□□ -1.35
LIMS1-214ENST00000542845 SETDB2Q96T68 719 aa6.59□□□□□ -1.35
LIMS1-214ENST00000542845 METRNQ9UJH8 293 aa6.59□□□□□ -1.35
LIMS1-214ENST00000542845 THSD7BQ9C0I4 1608 aa6.58□□□□□ -1.36
LIMS1-214ENST00000542845 FAM177BA6PVY3 158 aa6.58□□□□□ -1.36
LIMS1-214ENST00000542845 TRPA1O75762 1119 aa6.58□□□□□ -1.36
LIMS1-214ENST00000542845 BRPF1P55201 1214 aaPredicted RBP6.58□□□□□ -1.36
LIMS1-214ENST00000542845 AMOTQ4VCS5 1084 aa6.58□□□□□ -1.36
LIMS1-214ENST00000542845 HABP4Q5JVS0 413 aaKnown RBP6.58□□□□□ -1.36
LIMS1-214ENST00000542845 NPM2Q86SE8 214 aaKnown RBP6.58□□□□□ -1.36
LIMS1-214ENST00000542845 SAPCD2Q86UD0 394 aa6.58□□□□□ -1.36
LIMS1-214ENST00000542845 WDR70Q9NW82 654 aa6.58□□□□□ -1.36
LIMS1-214ENST00000542845 POLKQ9UBT6 870 aa6.58□□□□□ -1.36
LIMS1-214ENST00000542845 NCAPD2Q15021 1401 aa6.58□□□□□ -1.36
LIMS1-214ENST00000542845 ANKRD26Q9UPS8 1709 aa6.57□□□□□ -1.36
LIMS1-214ENST00000542845 A0A087WZG4 1122 aa6.57□□□□□ -1.36
LIMS1-214ENST00000542845 FZD9O00144 591 aa6.57□□□□□ -1.36
LIMS1-214ENST00000542845 TCERG1O14776 1098 aaKnown RBP6.57□□□□□ -1.36
LIMS1-214ENST00000542845 USP50Q70EL3 339 aaPredicted RBP6.57□□□□□ -1.36
LIMS1-214ENST00000542845 RTKN2Q8IZC4 609 aa6.57□□□□□ -1.36
LIMS1-214ENST00000542845 TESK2Q96S53 571 aa6.57□□□□□ -1.36
LIMS1-214ENST00000542845 CARD14Q9BXL6 1004 aa6.57□□□□□ -1.36
LIMS1-214ENST00000542845 GLIS2Q9BZE0 524 aaPredicted RBP6.57□□□□□ -1.36
LIMS1-214ENST00000542845 LGR6Q9HBX8 967 aa6.57□□□□□ -1.36
LIMS1-214ENST00000542845 MAMSTRQ6ZN01 415 aa6.56□□□□□ -1.36
LIMS1-214ENST00000542845 NBPF5PQ86XG9 351 aaPredicted RBP6.56□□□□□ -1.36
LIMS1-214ENST00000542845 AEBP1Q8IUX7 1158 aa6.56□□□□□ -1.36
LIMS1-214ENST00000542845 C7orf43Q8WVR3 580 aa6.56□□□□□ -1.36
LIMS1-214ENST00000542845 SLC52A2Q9HAB3 445 aa6.56□□□□□ -1.36
LIMS1-214ENST00000542845 ARFGEF2Q9Y6D5 1785 aa6.56□□□□□ -1.36
LIMS1-214ENST00000542845 SCN11AQ9UI33 1791 aa6.55□□□□□ -1.36
LIMS1-214ENST00000542845 AKAP11Q9UKA4 1901 aa6.55□□□□□ -1.36
LIMS1-214ENST00000542845 DLL1O00548 723 aa6.55□□□□□ -1.36
LIMS1-214ENST00000542845 STARD3NLO95772 234 aa6.55□□□□□ -1.36
LIMS1-214ENST00000542845 C7P10643 843 aa6.55□□□□□ -1.36
LIMS1-214ENST00000542845 CHRM1P11229 460 aaPredicted RBP6.55□□□□□ -1.36
LIMS1-214ENST00000542845 NPR1P16066 1061 aa6.55□□□□□ -1.36
LIMS1-214ENST00000542845 SCNN1DP51172 638 aa6.55□□□□□ -1.36
LIMS1-214ENST00000542845 EIF5P55010 431 aaKnown RBP6.55□□□□□ -1.36
LIMS1-214ENST00000542845 HUNKP57058 714 aa6.55□□□□□ -1.36
LIMS1-214ENST00000542845 KIF23Q02241 960 aaPredicted RBP6.55□□□□□ -1.36
LIMS1-214ENST00000542845 NOGQ13253 232 aa6.55□□□□□ -1.36
LIMS1-214ENST00000542845 AKAP4Q5JQC9 854 aa6.55□□□□□ -1.36
LIMS1-214ENST00000542845 ASTLQ6HA08 431 aaPredicted RBP6.55□□□□□ -1.36
LIMS1-214ENST00000542845 SULT6B1Q6IMI4 303 aa6.55□□□□□ -1.36
LIMS1-214ENST00000542845 DLK2Q6UY11 383 aa6.55□□□□□ -1.36
LIMS1-214ENST00000542845 LARGE2Q8N3Y3 721 aa6.55□□□□□ -1.36
LIMS1-214ENST00000542845 POLR3GLQ9BT43 218 aa6.55□□□□□ -1.36
LIMS1-214ENST00000542845 HDAC9Q9UKV0 1011 aa6.55□□□□□ -1.36
LIMS1-214ENST00000542845 HPS5Q9UPZ3 1129 aa6.55□□□□□ -1.36
LIMS1-214ENST00000542845 TULP1O00294 542 aaPredicted RBP6.54□□□□□ -1.36
LIMS1-214ENST00000542845 GTF2E1P29083 439 aaPredicted RBP6.54□□□□□ -1.36
LIMS1-214ENST00000542845 ALDH1B1P30837 517 aa6.54□□□□□ -1.36
LIMS1-214ENST00000542845 CTU1Q7Z7A3 348 aaKnown RBP6.54□□□□□ -1.36
LIMS1-214ENST00000542845 USP48Q86UV5 1035 aa6.54□□□□□ -1.36
LIMS1-214ENST00000542845 TTC5Q8N0Z6 440 aa6.54□□□□□ -1.36
LIMS1-214ENST00000542845 SLC39A7Q92504 469 aa6.54□□□□□ -1.36
LIMS1-214ENST00000542845 RNF186Q9NXI6 227 aa6.54□□□□□ -1.36
LIMS1-214ENST00000542845 RNMTO43148 476 aaKnown RBP6.53□□□□□ -1.36
LIMS1-214ENST00000542845 ATMINO43313 823 aaPredicted RBP6.53□□□□□ -1.36
LIMS1-214ENST00000542845 A1BGP04217 495 aa6.53□□□□□ -1.36
LIMS1-214ENST00000542845 PIP4K2AP48426 406 aaPredicted RBP6.53□□□□□ -1.36
LIMS1-214ENST00000542845 MNX1P50219 401 aaPredicted RBP6.53□□□□□ -1.36
LIMS1-214ENST00000542845 ZNF157P51786 506 aaPredicted RBP6.53□□□□□ -1.36
LIMS1-214ENST00000542845 DZIP3Q86Y13 1208 aaKnown RBP6.53□□□□□ -1.36
LIMS1-214ENST00000542845 NIM1KQ8IY84 436 aa6.53□□□□□ -1.36
LIMS1-214ENST00000542845 BCL2L13Q9BXK5 485 aa6.53□□□□□ -1.36
LIMS1-214ENST00000542845 TSPYL2Q9H2G4 693 aaPredicted RBP6.53□□□□□ -1.36
LIMS1-214ENST00000542845 ADARB2Q9NS39 739 aaKnown RBP6.53□□□□□ -1.36
LIMS1-214ENST00000542845 CAMTA2O94983 1202 aa6.52□□□□□ -1.37
LIMS1-214ENST00000542845 RGMBQ6NW40 437 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms