RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 ATP10DQ9P241 1426 aa15.92■□□□□ 0.14
VPS33A-207ENST00000542790 TCERG1O14776 1098 aaKnown RBP15.91■□□□□ 0.14
VPS33A-207ENST00000542790 ST5P78524 1137 aa15.91■□□□□ 0.14
VPS33A-207ENST00000542790 TCIRG1Q13488 830 aa15.91■□□□□ 0.14
VPS33A-207ENST00000542790 IFNLR1Q8IU57 520 aaPredicted RBP15.91■□□□□ 0.14
VPS33A-207ENST00000542790 BRIP1Q9BX63 1249 aa15.91■□□□□ 0.14
VPS33A-207ENST00000542790 NYXQ9GZU5 481 aa15.91■□□□□ 0.14
VPS33A-207ENST00000542790 SCN7AQ01118 1682 aa15.9■□□□□ 0.14
VPS33A-207ENST00000542790 A0A0G2JLW4 131 aa15.9■□□□□ 0.14
VPS33A-207ENST00000542790 GPTP24298 496 aa15.9■□□□□ 0.14
VPS33A-207ENST00000542790 GTF2E1P29083 439 aaPredicted RBP15.9■□□□□ 0.14
VPS33A-207ENST00000542790 GPR162Q16538 588 aa15.9■□□□□ 0.14
VPS33A-207ENST00000542790 PARP10Q53GL7 1025 aa15.9■□□□□ 0.14
VPS33A-207ENST00000542790 RIC3Q7Z5B4 369 aa15.9■□□□□ 0.14
VPS33A-207ENST00000542790 TRMT2AQ8IZ69 625 aaKnown RBP15.9■□□□□ 0.14
VPS33A-207ENST00000542790 PDZRN3Q9UPQ7 1066 aa15.9■□□□□ 0.14
VPS33A-207ENST00000542790 FAM177BA6PVY3 158 aa15.89■□□□□ 0.13
VPS33A-207ENST00000542790 DPEP1P16444 411 aa15.89■□□□□ 0.13
VPS33A-207ENST00000542790 PDE6BP35913 854 aa15.89■□□□□ 0.13
VPS33A-207ENST00000542790 PPP1R42Q7Z4L9 355 aa15.89■□□□□ 0.13
VPS33A-207ENST00000542790 SUSD4Q5VX71 490 aa15.88■□□□□ 0.13
VPS33A-207ENST00000542790 PELP1Q8IZL8 1130 aaKnown RBP15.88■□□□□ 0.13
VPS33A-207ENST00000542790 ZNF428Q96B54 188 aa15.88■□□□□ 0.13
VPS33A-207ENST00000542790 UBN2Q6ZU65 1347 aa15.88■□□□□ 0.13
VPS33A-207ENST00000542790 PXDNLA1KZ92 1463 aa15.87■□□□□ 0.13
VPS33A-207ENST00000542790 H0YIN7 160 aa15.87■□□□□ 0.13
VPS33A-207ENST00000542790 KSR2Q6VAB6 950 aa15.87■□□□□ 0.13
VPS33A-207ENST00000542790 NLRP10Q86W26 655 aa15.87■□□□□ 0.13
VPS33A-207ENST00000542790 C2CD5Q86YS7 1000 aa15.87■□□□□ 0.13
VPS33A-207ENST00000542790 CCDC24Q8N4L8 307 aa15.87■□□□□ 0.13
VPS33A-207ENST00000542790 UTP14AQ9BVJ6 771 aaKnown RBP15.87■□□□□ 0.13
VPS33A-207ENST00000542790 PIM2Q9P1W9 311 aa15.87■□□□□ 0.13
VPS33A-207ENST00000542790 IBTKQ9P2D0 1353 aaPredicted RBP15.87■□□□□ 0.13
VPS33A-207ENST00000542790 GRIN3BO60391 1043 aa15.86■□□□□ 0.13
VPS33A-207ENST00000542790 CT47B1P0C2W7 299 aaPredicted RBP15.86■□□□□ 0.13
VPS33A-207ENST00000542790 KCNA3P22001 575 aa15.86■□□□□ 0.13
VPS33A-207ENST00000542790 CHRNA5P30532 468 aa15.86■□□□□ 0.13
VPS33A-207ENST00000542790 FLIIQ13045 1269 aa15.86■□□□□ 0.13
VPS33A-207ENST00000542790 TRIM28Q13263 835 aaKnown RBP15.86■□□□□ 0.13
VPS33A-207ENST00000542790 G2E3Q7L622 706 aa15.86■□□□□ 0.13
VPS33A-207ENST00000542790 PI4KAP2A4QPH2 592 aa15.85■□□□□ 0.13
VPS33A-207ENST00000542790 NUTM1Q86Y26 1132 aa15.85■□□□□ 0.13
VPS33A-207ENST00000542790 PI4KAP1Q8N8J0 262 aa15.85■□□□□ 0.13
VPS33A-207ENST00000542790 ISCA1Q9BUE6 129 aa15.85■□□□□ 0.13
VPS33A-207ENST00000542790 METTL22Q9BUU2 404 aaPredicted RBP15.85■□□□□ 0.13
VPS33A-207ENST00000542790 MAP3K2Q9Y2U5 619 aa15.85■□□□□ 0.13
VPS33A-207ENST00000542790 RNF123Q5XPI4 1314 aa15.85■□□□□ 0.13
VPS33A-207ENST00000542790 BCORQ6W2J9 1755 aa15.85■□□□□ 0.13
VPS33A-207ENST00000542790 KLRG2A4D1S0 409 aaPredicted RBP15.84■□□□□ 0.13
VPS33A-207ENST00000542790 ATP5J2-PTCD1G3V325 749 aa15.84■□□□□ 0.13
VPS33A-207ENST00000542790 NTSR2O95665 410 aa15.84■□□□□ 0.13
VPS33A-207ENST00000542790 FKBP5Q13451 457 aaPredicted RBP15.84■□□□□ 0.13
VPS33A-207ENST00000542790 ERFEQ4G0M1 354 aa15.84■□□□□ 0.13
VPS33A-207ENST00000542790 DALRD3Q5D0E6 543 aaKnown RBP15.84■□□□□ 0.13
VPS33A-207ENST00000542790 MYD88Q99836 296 aa15.84■□□□□ 0.13
VPS33A-207ENST00000542790 TRMT112Q9UI30 125 aaKnown RBP15.84■□□□□ 0.13
VPS33A-207ENST00000542790 WWC3Q9ULE0 1092 aa15.84■□□□□ 0.13
VPS33A-207ENST00000542790 ZBED9Q6R2W3 1325 aa15.84■□□□□ 0.13
VPS33A-207ENST00000542790 YBX3P16989 372 aaKnown RBP eCLIP15.83■□□□□ 0.12
VPS33A-207ENST00000542790 NEXNQ0ZGT2 675 aa15.83■□□□□ 0.12
VPS33A-207ENST00000542790 SLC10A5Q5PT55 438 aa15.83■□□□□ 0.12
VPS33A-207ENST00000542790 BCS1LQ9Y276 419 aa15.83■□□□□ 0.12
VPS33A-207ENST00000542790 SRGNP10124 158 aa15.82■□□□□ 0.12
VPS33A-207ENST00000542790 ALDH1L2Q3SY69 923 aa15.82■□□□□ 0.12
VPS33A-207ENST00000542790 CCDC191Q8NCU4 936 aa15.82■□□□□ 0.12
VPS33A-207ENST00000542790 ZNF622Q969S3 477 aaKnown RBP eCLIP15.82■□□□□ 0.12
VPS33A-207ENST00000542790 MASTLQ96GX5 879 aa15.82■□□□□ 0.12
VPS33A-207ENST00000542790 SH3TC1Q8TE82 1336 aa15.82■□□□□ 0.12
VPS33A-207ENST00000542790 NRXN2Q9P2S2 1712 aa15.82■□□□□ 0.12
VPS33A-207ENST00000542790 ADCY9O60503 1353 aa15.81■□□□□ 0.12
VPS33A-207ENST00000542790 STYK1Q6J9G0 422 aa15.81■□□□□ 0.12
VPS33A-207ENST00000542790 TTLL6Q8N841 843 aa15.81■□□□□ 0.12
VPS33A-207ENST00000542790 SSH1Q8WYL5 1049 aa15.81■□□□□ 0.12
VPS33A-207ENST00000542790 CNKSR1Q969H4 720 aa15.81■□□□□ 0.12
VPS33A-207ENST00000542790 NLRP3Q96P20 1036 aa15.81■□□□□ 0.12
VPS33A-207ENST00000542790 GALR2O43603 387 aaPredicted RBP15.8■□□□□ 0.12
VPS33A-207ENST00000542790 NPR1P16066 1061 aa15.8■□□□□ 0.12
VPS33A-207ENST00000542790 MRPL50Q8N5N7 158 aaKnown RBP15.8■□□□□ 0.12
VPS33A-207ENST00000542790 DNAAF4Q8WXU2 420 aa15.8■□□□□ 0.12
VPS33A-207ENST00000542790 CWC25Q9NXE8 425 aaPredicted RBP15.8■□□□□ 0.12
VPS33A-207ENST00000542790 RIC1Q4ADV7 1423 aa15.79■□□□□ 0.12
VPS33A-207ENST00000542790 ABCC12Q96J65 1359 aa15.79■□□□□ 0.12
VPS33A-207ENST00000542790 HSP90B1P14625 803 aaKnown RBP15.79■□□□□ 0.12
VPS33A-207ENST00000542790 CRY2Q49AN0 593 aa15.79■□□□□ 0.12
VPS33A-207ENST00000542790 ZBTB38Q8NAP3 1195 aaPredicted RBP15.79■□□□□ 0.12
VPS33A-207ENST00000542790 FAM89AQ96GI7 184 aa15.79■□□□□ 0.12
VPS33A-207ENST00000542790 KIF13BQ9NQT8 1826 aa15.78■□□□□ 0.12
VPS33A-207ENST00000542790 IGKV5-2P06315 115 aa15.78■□□□□ 0.12
VPS33A-207ENST00000542790 ALDH1B1P30837 517 aa15.78■□□□□ 0.12
VPS33A-207ENST00000542790 LINS1Q8NG48 757 aa15.78■□□□□ 0.12
VPS33A-207ENST00000542790 SMC4Q9NTJ3 1288 aa15.78■□□□□ 0.12
VPS33A-207ENST00000542790 PTPRCP08575 1304 aa15.77■□□□□ 0.12
VPS33A-207ENST00000542790 PCCAP05165 728 aaPredicted RBP15.77■□□□□ 0.12
VPS33A-207ENST00000542790 HCLS1P14317 486 aaPredicted RBP15.77■□□□□ 0.12
VPS33A-207ENST00000542790 HOXA10P31260 410 aaPredicted RBP15.77■□□□□ 0.12
VPS33A-207ENST00000542790 CLCN6P51797 869 aa15.77■□□□□ 0.12
VPS33A-207ENST00000542790 SYNE4Q8N205 404 aa15.77■□□□□ 0.12
VPS33A-207ENST00000542790 RPGRQ92834 1020 aaKnown RBP15.77■□□□□ 0.12
VPS33A-207ENST00000542790 BCL2L13Q9BXK5 485 aa15.77■□□□□ 0.12
VPS33A-207ENST00000542790 AFDNP55196 1824 aaKnown RBP15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms