RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 HLFQ16534 295 aa17.7■□□□□ 0.42
CLIP1-216ENST00000541410 SYNE4Q8N205 404 aa17.7■□□□□ 0.42
CLIP1-216ENST00000541410 MARCH10Q8NA82 808 aaPredicted RBP17.7■□□□□ 0.42
CLIP1-216ENST00000541410 ZNF594Q96JF6 807 aaPredicted RBP17.7■□□□□ 0.42
CLIP1-216ENST00000541410 BOLA2Q9H3K6 86 aa17.7■□□□□ 0.42
CLIP1-216ENST00000541410 ZBTB1Q9Y2K1 713 aa17.7■□□□□ 0.42
CLIP1-216ENST00000541410 TTC41PQ6P2S7 1318 aa17.7■□□□□ 0.42
CLIP1-216ENST00000541410 TJP1Q07157 1748 aa17.7■□□□□ 0.42
CLIP1-216ENST00000541410 NRAPQ86VF7 1730 aa17.7■□□□□ 0.42
CLIP1-216ENST00000541410 RABEP1Q15276 862 aa17.69■□□□□ 0.42
CLIP1-216ENST00000541410 C8orf37Q96NL8 207 aa17.69■□□□□ 0.42
CLIP1-216ENST00000541410 NDUFB9Q9Y6M9 179 aa17.69■□□□□ 0.42
CLIP1-216ENST00000541410 FAM89AQ96GI7 184 aa17.69■□□□□ 0.42
CLIP1-216ENST00000541410 COPRSQ9NQ92 184 aa17.69■□□□□ 0.42
CLIP1-216ENST00000541410 CYP19A1P11511 503 aaPredicted RBP17.68■□□□□ 0.42
CLIP1-216ENST00000541410 KIF6Q6ZMV9 814 aa17.68■□□□□ 0.42
CLIP1-216ENST00000541410 VSIG10Q8N0Z9 540 aa17.68■□□□□ 0.42
CLIP1-216ENST00000541410 GPATCH3Q96I76 525 aa17.68■□□□□ 0.42
CLIP1-216ENST00000541410 USP42Q9H9J4 1324 aaKnown RBP17.68■□□□□ 0.42
CLIP1-216ENST00000541410 EIF5BO60841 1220 aaKnown RBP17.68■□□□□ 0.42
CLIP1-216ENST00000541410 DEKP35659 375 aaKnown RBP17.68■□□□□ 0.42
CLIP1-216ENST00000541410 TCIRG1Q13488 830 aa17.68■□□□□ 0.42
CLIP1-216ENST00000541410 CCDC191Q8NCU4 936 aa17.68■□□□□ 0.42
CLIP1-216ENST00000541410 EDC3Q96F86 508 aaKnown RBP17.68■□□□□ 0.42
CLIP1-216ENST00000541410 TEX13AQ9BXU3 409 aaPredicted RBP17.68■□□□□ 0.42
CLIP1-216ENST00000541410 TBC1D2BQ9UPU7 963 aa17.68■□□□□ 0.42
CLIP1-216ENST00000541410 SPATA31A5Q5VU36 1347 aa17.67■□□□□ 0.42
CLIP1-216ENST00000541410 SPATA31A7Q8IWB4 1347 aa17.67■□□□□ 0.42
CLIP1-216ENST00000541410 FAM98CQ17RN3 349 aaKnown RBP17.67■□□□□ 0.42
CLIP1-216ENST00000541410 NOL8Q76FK4 1167 aaKnown RBP17.66■□□□□ 0.42
CLIP1-216ENST00000541410 KCNQ2O43526 872 aa17.66■□□□□ 0.42
CLIP1-216ENST00000541410 TNNI3KQ59H18 835 aa17.66■□□□□ 0.42
CLIP1-216ENST00000541410 NGLY1Q96IV0 654 aa17.66■□□□□ 0.42
CLIP1-216ENST00000541410 ISCA1Q9BUE6 129 aa17.66■□□□□ 0.42
CLIP1-216ENST00000541410 DIAPH3Q9NSV4 1193 aa17.66■□□□□ 0.42
CLIP1-216ENST00000541410 CHMP5Q9NZZ3 219 aa17.66■□□□□ 0.42
CLIP1-216ENST00000541410 DBNLQ9UJU6 430 aaKnown RBP17.66■□□□□ 0.42
CLIP1-216ENST00000541410 FPGT-TNNI3KV9GXZ4 949 aa17.66■□□□□ 0.42
CLIP1-216ENST00000541410 SGSM2O43147 1006 aa17.65■□□□□ 0.42
CLIP1-216ENST00000541410 NEK4P51957 841 aa17.65■□□□□ 0.42
CLIP1-216ENST00000541410 MYT1Q01538 1121 aa17.65■□□□□ 0.42
CLIP1-216ENST00000541410 LRRC24Q50LG9 513 aa17.65■□□□□ 0.42
CLIP1-216ENST00000541410 DBNDD2Q9BQY9 259 aa17.65■□□□□ 0.42
CLIP1-216ENST00000541410 MAP3K15Q6ZN16 1313 aa17.64■□□□□ 0.41
CLIP1-216ENST00000541410 PUS3Q9BZE2 481 aaKnown RBP17.64■□□□□ 0.41
CLIP1-216ENST00000541410 UPF3BQ9BZI7 483 aaKnown RBP17.64■□□□□ 0.41
CLIP1-216ENST00000541410 FAM227BQ96M60 508 aa17.64■□□□□ 0.41
CLIP1-216ENST00000541410 THRAP3Q9Y2W1 955 aaKnown RBP17.64■□□□□ 0.41
CLIP1-216ENST00000541410 ATP6V1AP38606 617 aa17.63■□□□□ 0.41
CLIP1-216ENST00000541410 KCNQ4P56696 695 aa17.63■□□□□ 0.41
CLIP1-216ENST00000541410 NEUROD6Q96NK8 337 aa17.63■□□□□ 0.41
CLIP1-216ENST00000541410 CDCA7Q9BWT1 371 aaPredicted RBP17.63■□□□□ 0.41
CLIP1-216ENST00000541410 MCCP23508 829 aa17.62■□□□□ 0.41
CLIP1-216ENST00000541410 DDIT3P35638 169 aa17.62■□□□□ 0.41
CLIP1-216ENST00000541410 TIMM10P62072 90 aa17.62■□□□□ 0.41
CLIP1-216ENST00000541410 GIGYF2Q6Y7W6 1299 aaKnown RBP17.62■□□□□ 0.41
CLIP1-216ENST00000541410 ATG9AQ7Z3C6 839 aa17.62■□□□□ 0.41
CLIP1-216ENST00000541410 EVI5LQ96CN4 794 aa17.62■□□□□ 0.41
CLIP1-216ENST00000541410 COL15A1P39059 1388 aa17.62■□□□□ 0.41
CLIP1-216ENST00000541410 SLIT2O94813 1529 aa17.62■□□□□ 0.41
CLIP1-216ENST00000541410 ST18O60284 1047 aa17.62■□□□□ 0.41
CLIP1-216ENST00000541410 CHGBP05060 677 aa17.62■□□□□ 0.41
CLIP1-216ENST00000541410 LRP6O75581 1613 aa17.62■□□□□ 0.41
CLIP1-216ENST00000541410 FAM177BA6PVY3 158 aa17.61■□□□□ 0.41
CLIP1-216ENST00000541410 PTH1RQ03431 593 aa17.61■□□□□ 0.41
CLIP1-216ENST00000541410 DZIP3Q86Y13 1208 aaKnown RBP17.61■□□□□ 0.41
CLIP1-216ENST00000541410 DNAJC2Q99543 621 aaKnown RBP17.61■□□□□ 0.41
CLIP1-216ENST00000541410 FSD1Q9BTV5 496 aa17.61■□□□□ 0.41
CLIP1-216ENST00000541410 FAM182BQ5T319 152 aa17.61■□□□□ 0.41
CLIP1-216ENST00000541410 LSG1Q9H089 658 aaKnown RBP17.61■□□□□ 0.41
CLIP1-216ENST00000541410 KIAA1211Q6ZU35 1233 aa17.6■□□□□ 0.41
CLIP1-216ENST00000541410 NUP98P52948 1817 aa17.6■□□□□ 0.41
CLIP1-216ENST00000541410 NMIQ13287 307 aaPredicted RBP17.6■□□□□ 0.41
CLIP1-216ENST00000541410 ITPK1Q13572 414 aa17.6■□□□□ 0.41
CLIP1-216ENST00000541410 PTF1AQ7RTS3 328 aa17.6■□□□□ 0.41
CLIP1-216ENST00000541410 NLRP10Q86W26 655 aa17.6■□□□□ 0.41
CLIP1-216ENST00000541410 LOC102724428A0A0B4J2F2 783 aa17.59■□□□□ 0.41
CLIP1-216ENST00000541410 HSPA4P34932 840 aa17.59■□□□□ 0.41
CLIP1-216ENST00000541410 SIK1P57059 783 aa17.59■□□□□ 0.41
CLIP1-216ENST00000541410 RASEFQ8IZ41 740 aa17.59■□□□□ 0.41
CLIP1-216ENST00000541410 ZGPATQ8N5A5 531 aaKnown RBP17.59■□□□□ 0.41
CLIP1-216ENST00000541410 RAD50Q92878 1312 aa17.59■□□□□ 0.41
CLIP1-216ENST00000541410 CRKLP46109 303 aaKnown RBP17.59■□□□□ 0.41
CLIP1-216ENST00000541410 CCDC57Q2TAC2 916 aa17.59■□□□□ 0.41
CLIP1-216ENST00000541410 ZBTB38Q8NAP3 1195 aaPredicted RBP17.59■□□□□ 0.41
CLIP1-216ENST00000541410 NWD2Q9ULI1 1742 aa17.58■□□□□ 0.41
CLIP1-216ENST00000541410 A0A0D9SFI3 127 aa17.58■□□□□ 0.41
CLIP1-216ENST00000541410 PCCAP05165 728 aaPredicted RBP17.58■□□□□ 0.41
CLIP1-216ENST00000541410 INTS5Q6P9B9 1019 aaKnown RBP17.58■□□□□ 0.41
CLIP1-216ENST00000541410 BARGINQ6ZT62 677 aa17.58■□□□□ 0.41
CLIP1-216ENST00000541410 LARP6Q9BRS8 491 aaKnown RBP17.58■□□□□ 0.41
CLIP1-216ENST00000541410 MYH14Q7Z406 1995 aaKnown RBP17.58■□□□□ 0.41
CLIP1-216ENST00000541410 EYA2O00167 538 aa17.58■□□□□ 0.4
CLIP1-216ENST00000541410 TRMT112Q9UI30 125 aaKnown RBP17.58■□□□□ 0.4
CLIP1-216ENST00000541410 CPA1P15085 419 aa17.57■□□□□ 0.4
CLIP1-216ENST00000541410 SMIM5Q71RC9 77 aa17.57■□□□□ 0.4
CLIP1-216ENST00000541410 DDX46Q7L014 1031 aaKnown RBP17.57■□□□□ 0.4
CLIP1-216ENST00000541410 TNPO1Q92973 898 aaKnown RBP17.57■□□□□ 0.4
CLIP1-216ENST00000541410 BCL9LQ86UU0 1499 aa17.57■□□□□ 0.4
CLIP1-216ENST00000541410 IL6STP40189 918 aaPredicted RBP17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms