RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 TSPY26PQ9H489 355 aa15.05■□□□□ 0
RNF4-222ENST00000541204 SASH1O94885 1247 aa15.05■□□□□ -0
RNF4-222ENST00000541204 EVA1CP58658 441 aa15.05■□□□□ -0
RNF4-222ENST00000541204 METTL22Q9BUU2 404 aaPredicted RBP15.05■□□□□ -0
RNF4-222ENST00000541204 TLR7Q9NYK1 1049 aaKnown RBP15.05■□□□□ -0
RNF4-222ENST00000541204 COL18A1P39060 1754 aa15.05■□□□□ -0
RNF4-222ENST00000541204 LARP6Q9BRS8 491 aaKnown RBP15.04■□□□□ -0
RNF4-222ENST00000541204 WDR17Q8IZU2 1322 aa15.04■□□□□ -0
RNF4-222ENST00000541204 WDR33Q9C0J8 1336 aaKnown RBP15.04■□□□□ -0
RNF4-222ENST00000541204 KDM4FA0A1W2PPD8 638 aa15.04■□□□□ -0
RNF4-222ENST00000541204 TPRNQ4KMQ1 711 aa15.04■□□□□ -0
RNF4-222ENST00000541204 SYAP1Q96A49 352 aaPredicted RBP15.04■□□□□ -0
RNF4-222ENST00000541204 EAF2Q96CJ1 260 aaPredicted RBP15.04■□□□□ -0
RNF4-222ENST00000541204 ECHDC1Q9NTX5 307 aa15.04■□□□□ -0
RNF4-222ENST00000541204 CCDC39Q9UFE4 941 aa15.04■□□□□ -0
RNF4-222ENST00000541204 ZNF330Q9Y3S2 320 aaPredicted RBP15.04■□□□□ -0
RNF4-222ENST00000541204 SIPA1L3O60292 1781 aaPredicted RBP15.04■□□□□ -0
RNF4-222ENST00000541204 CPDO75976 1380 aa15.04■□□□□ -0
RNF4-222ENST00000541204 GLRX3O76003 335 aaKnown RBP15.03■□□□□ -0
RNF4-222ENST00000541204 HDAC5Q9UQL6 1122 aa15.03■□□□□ -0
RNF4-222ENST00000541204 C5P01031 1676 aa15.03■□□□□ -0
RNF4-222ENST00000541204 SGSM2O43147 1006 aa15.03■□□□□ -0
RNF4-222ENST00000541204 LRP10Q7Z4F1 713 aa15.03■□□□□ -0
RNF4-222ENST00000541204 DIAPH3Q9NSV4 1193 aa15.03■□□□□ -0
RNF4-222ENST00000541204 CCDC9Q9Y3X0 531 aaKnown RBP15.03■□□□□ -0
RNF4-222ENST00000541204 SNX14Q9Y5W7 946 aa15.03■□□□□ -0
RNF4-222ENST00000541204 RPAP1Q9BWH6 1393 aaPredicted RBP15.03■□□□□ -0
RNF4-222ENST00000541204 A1BGP04217 495 aa15.02■□□□□ -0
RNF4-222ENST00000541204 RAD50Q92878 1312 aa15.02■□□□□ -0
RNF4-222ENST00000541204 TCHHQ07283 1943 aa15.02■□□□□ -0
RNF4-222ENST00000541204 A0A087WZG4 1122 aa15.02□□□□□ -0.01
RNF4-222ENST00000541204 ERC1Q8IUD2 1116 aa15.02□□□□□ -0.01
RNF4-222ENST00000541204 CHMP3Q9Y3E7 222 aa15.02□□□□□ -0.01
RNF4-222ENST00000541204 RASEFQ8IZ41 740 aa15.02□□□□□ -0.01
RNF4-222ENST00000541204 GPATCH3Q96I76 525 aa15.02□□□□□ -0.01
RNF4-222ENST00000541204 BOLA2Q9H3K6 86 aa15.02□□□□□ -0.01
RNF4-222ENST00000541204 SCN11AQ9UI33 1791 aa15.01□□□□□ -0.01
RNF4-222ENST00000541204 NBPF26B4DH59 902 aa15.01□□□□□ -0.01
RNF4-222ENST00000541204 EPB41L2O43491 1005 aaKnown RBP15.01□□□□□ -0.01
RNF4-222ENST00000541204 AK2P54819 239 aa15.01□□□□□ -0.01
RNF4-222ENST00000541204 NBPF14Q5TI25 921 aa15.01□□□□□ -0.01
RNF4-222ENST00000541204 NBPF10Q6P3W6 841 aaKnown RBP15.01□□□□□ -0.01
RNF4-222ENST00000541204 NBPF15Q8N660 670 aa15.01□□□□□ -0.01
RNF4-222ENST00000541204 LSG1Q9H089 658 aaKnown RBP15.01□□□□□ -0.01
RNF4-222ENST00000541204 UTYO14607 1347 aa15.01□□□□□ -0.01
RNF4-222ENST00000541204 SOS2Q07890 1332 aaPredicted RBP15.01□□□□□ -0.01
RNF4-222ENST00000541204 TTC41PQ6P2S7 1318 aa15.01□□□□□ -0.01
RNF4-222ENST00000541204 PCDH11XQ9BZA7 1347 aa15.01□□□□□ -0.01
RNF4-222ENST00000541204 PCDH11YQ9BZA8 1340 aa15.01□□□□□ -0.01
RNF4-222ENST00000541204 IL2RBP14784 551 aa15.01□□□□□ -0.01
RNF4-222ENST00000541204 RBM10P98175 930 aaKnown RBP15.01□□□□□ -0.01
RNF4-222ENST00000541204 TTLL7Q6ZT98 887 aa15.01□□□□□ -0.01
RNF4-222ENST00000541204 ZBTB3Q9H5J0 574 aa15.01□□□□□ -0.01
RNF4-222ENST00000541204 CNPY2Q9Y2B0 182 aa15.01□□□□□ -0.01
RNF4-222ENST00000541204 ADAMTS7Q9UKP4 1686 aa15□□□□□ -0.01
RNF4-222ENST00000541204 MCM5P33992 734 aa15□□□□□ -0.01
RNF4-222ENST00000541204 TERF1P54274 439 aa15□□□□□ -0.01
RNF4-222ENST00000541204 TTC14Q96N46 770 aa15□□□□□ -0.01
RNF4-222ENST00000541204 DTNBO60941 627 aa15□□□□□ -0.01
RNF4-222ENST00000541204 PHF14O94880 888 aa15□□□□□ -0.01
RNF4-222ENST00000541204 PTMAP06454 111 aaKnown RBP15□□□□□ -0.01
RNF4-222ENST00000541204 CPA1P15085 419 aa15□□□□□ -0.01
RNF4-222ENST00000541204 NDUFB9Q9Y6M9 179 aa15□□□□□ -0.01
RNF4-222ENST00000541204 RUFY3Q7L099 469 aa14.99□□□□□ -0.01
RNF4-222ENST00000541204 VSIG10Q8N0Z9 540 aa14.99□□□□□ -0.01
RNF4-222ENST00000541204 EDC3Q96F86 508 aaKnown RBP14.99□□□□□ -0.01
RNF4-222ENST00000541204 PDCL3Q9H2J4 239 aa14.99□□□□□ -0.01
RNF4-222ENST00000541204 LMTK3Q96Q04 1460 aa14.98□□□□□ -0.01
RNF4-222ENST00000541204 XIRP1Q702N8 1843 aaKnown RBP14.98□□□□□ -0.01
RNF4-222ENST00000541204 ZSCAN22P10073 491 aaPredicted RBP14.98□□□□□ -0.01
RNF4-222ENST00000541204 PTH1RQ03431 593 aa14.98□□□□□ -0.01
RNF4-222ENST00000541204 MPNDQ8N594 471 aa14.98□□□□□ -0.01
RNF4-222ENST00000541204 FAM227BQ96M60 508 aa14.98□□□□□ -0.01
RNF4-222ENST00000541204 CRYBG1Q9Y4K1 1723 aa14.98□□□□□ -0.01
RNF4-222ENST00000541204 SYT1P21579 422 aa14.98□□□□□ -0.01
RNF4-222ENST00000541204 LIMCH1Q9UPQ0 1083 aa14.98□□□□□ -0.01
RNF4-222ENST00000541204 COL5A2P05997 1499 aaPredicted RBP14.98□□□□□ -0.01
RNF4-222ENST00000541204 USP42Q9H9J4 1324 aaKnown RBP14.97□□□□□ -0.01
RNF4-222ENST00000541204 UQCRHLA0A096LP55 91 aa14.97□□□□□ -0.01
RNF4-222ENST00000541204 STX6O43752 255 aa14.97□□□□□ -0.01
RNF4-222ENST00000541204 UQCRHP07919 91 aa14.97□□□□□ -0.01
RNF4-222ENST00000541204 CASTP20810 708 aaKnown RBP14.97□□□□□ -0.01
RNF4-222ENST00000541204 CSPP1Q1MSJ5 1256 aa14.97□□□□□ -0.01
RNF4-222ENST00000541204 PLBD2Q8NHP8 589 aa14.97□□□□□ -0.01
RNF4-222ENST00000541204 LARGE1O95461 756 aa14.97□□□□□ -0.01
RNF4-222ENST00000541204 TFCP2Q12800 502 aa14.97□□□□□ -0.01
RNF4-222ENST00000541204 TMEM87AQ8NBN3 555 aa14.97□□□□□ -0.01
RNF4-222ENST00000541204 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.97□□□□□ -0.01
RNF4-222ENST00000541204 PRPF40BQ6NWY9 871 aaKnown RBP14.96□□□□□ -0.01
RNF4-222ENST00000541204 LMBR1LQ6UX01 489 aa14.96□□□□□ -0.01
RNF4-222ENST00000541204 CARD10Q9BWT7 1032 aa14.96□□□□□ -0.01
RNF4-222ENST00000541204 FAM13BQ9NYF5 915 aa14.96□□□□□ -0.01
RNF4-222ENST00000541204 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.96□□□□□ -0.01
RNF4-222ENST00000541204 CCDC183Q5T5S1 534 aa14.96□□□□□ -0.01
RNF4-222ENST00000541204 EVI5LQ96CN4 794 aa14.96□□□□□ -0.01
RNF4-222ENST00000541204 FSD1Q9BTV5 496 aa14.96□□□□□ -0.01
RNF4-222ENST00000541204 BTG4Q9NY30 223 aa14.96□□□□□ -0.01
RNF4-222ENST00000541204 USP25Q9UHP3 1055 aa14.96□□□□□ -0.01
RNF4-222ENST00000541204 SMC3Q9UQE7 1217 aa14.96□□□□□ -0.01
RNF4-222ENST00000541204 FIBPO43427 364 aa14.96□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms