RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 FMNL2Q96PY5 1086 aa16.66■□□□□ 0.26
CLSTN3-208ENST00000538933 LMOD1P29536 600 aaPredicted RBP16.65■□□□□ 0.26
CLSTN3-208ENST00000538933 EIF6P56537 245 aaKnown RBP16.65■□□□□ 0.26
CLSTN3-208ENST00000538933 CC2D1BQ5T0F9 858 aaKnown RBP16.65■□□□□ 0.26
CLSTN3-208ENST00000538933 TEFQ10587 303 aa16.64■□□□□ 0.25
CLSTN3-208ENST00000538933 CRY2Q49AN0 593 aa16.64■□□□□ 0.25
CLSTN3-208ENST00000538933 ZIC5Q96T25 663 aa16.64■□□□□ 0.25
CLSTN3-208ENST00000538933 PGAP2Q9UHJ9 254 aa16.64■□□□□ 0.25
CLSTN3-208ENST00000538933 PRAMEF22A3QJZ6 481 aa16.63■□□□□ 0.25
CLSTN3-208ENST00000538933 RGL2O15211 777 aa16.63■□□□□ 0.25
CLSTN3-208ENST00000538933 PER1O15534 1290 aaPredicted RBP16.63■□□□□ 0.25
CLSTN3-208ENST00000538933 CIAPIN1Q6FI81 312 aa16.63■□□□□ 0.25
CLSTN3-208ENST00000538933 NPM2Q86SE8 214 aaKnown RBP16.63■□□□□ 0.25
CLSTN3-208ENST00000538933 NIP7Q9Y221 180 aaKnown RBP eCLIP16.63■□□□□ 0.25
CLSTN3-208ENST00000538933 CEMIPQ8WUJ3 1361 aa16.63■□□□□ 0.25
CLSTN3-208ENST00000538933 GNAT3A8MTJ3 354 aa16.62■□□□□ 0.25
CLSTN3-208ENST00000538933 CELF2O95319 508 aaKnown RBP16.62■□□□□ 0.25
CLSTN3-208ENST00000538933 AMER1Q5JTC6 1135 aaPredicted RBP16.62■□□□□ 0.25
CLSTN3-208ENST00000538933 CC2D2BQ6DHV5 1058 aa16.62■□□□□ 0.25
CLSTN3-208ENST00000538933 SLC51AQ86UW1 340 aa16.62■□□□□ 0.25
CLSTN3-208ENST00000538933 GPRC5DQ9NZD1 345 aa16.62■□□□□ 0.25
CLSTN3-208ENST00000538933 ZNF652Q9Y2D9 606 aa16.62■□□□□ 0.25
CLSTN3-208ENST00000538933 NBPF26B4DH59 902 aa16.61■□□□□ 0.25
CLSTN3-208ENST00000538933 NBPF10Q6P3W6 841 aaKnown RBP16.61■□□□□ 0.25
CLSTN3-208ENST00000538933 NBPF15Q8N660 670 aa16.61■□□□□ 0.25
CLSTN3-208ENST00000538933 FAM177BA6PVY3 158 aa16.6■□□□□ 0.25
CLSTN3-208ENST00000538933 HOXA10P31260 410 aaPredicted RBP16.6■□□□□ 0.25
CLSTN3-208ENST00000538933 HLFQ16534 295 aa16.6■□□□□ 0.25
CLSTN3-208ENST00000538933 LARGE2Q8N3Y3 721 aa16.6■□□□□ 0.25
CLSTN3-208ENST00000538933 GLIS2Q9BZE0 524 aaPredicted RBP16.6■□□□□ 0.25
CLSTN3-208ENST00000538933 ADARB2Q9NS39 739 aaKnown RBP16.6■□□□□ 0.25
CLSTN3-208ENST00000538933 NUP98P52948 1817 aa16.59■□□□□ 0.25
CLSTN3-208ENST00000538933 DIAPH1O60610 1272 aaKnown RBP16.59■□□□□ 0.25
CLSTN3-208ENST00000538933 SOX10P56693 466 aa16.59■□□□□ 0.25
CLSTN3-208ENST00000538933 PRPF38BQ5VTL8 546 aaKnown RBP16.59■□□□□ 0.25
CLSTN3-208ENST00000538933 NPC1L1Q9UHC9 1359 aa16.59■□□□□ 0.25
CLSTN3-208ENST00000538933 BTBD11A6QL63 1104 aa16.58■□□□□ 0.24
CLSTN3-208ENST00000538933 HIRAP54198 1017 aaPredicted RBP16.58■□□□□ 0.24
CLSTN3-208ENST00000538933 RALBP1Q15311 655 aa16.58■□□□□ 0.24
CLSTN3-208ENST00000538933 GRIPAP1Q4V328 841 aa16.58■□□□□ 0.24
CLSTN3-208ENST00000538933 ABCC12Q96J65 1359 aa16.58■□□□□ 0.24
CLSTN3-208ENST00000538933 POLR2AP24928 1970 aaKnown RBP16.57■□□□□ 0.24
CLSTN3-208ENST00000538933 CXCL9Q07325 125 aa16.56■□□□□ 0.24
CLSTN3-208ENST00000538933 NOGQ13253 232 aa16.56■□□□□ 0.24
CLSTN3-208ENST00000538933 GAS2L2Q8NHY3 880 aa16.56■□□□□ 0.24
CLSTN3-208ENST00000538933 PRKRIP1Q9H875 184 aaPredicted RBP16.56■□□□□ 0.24
CLSTN3-208ENST00000538933 COL3A1P02461 1466 aaPredicted RBP16.55■□□□□ 0.24
CLSTN3-208ENST00000538933 RIC1Q4ADV7 1423 aa16.55■□□□□ 0.24
CLSTN3-208ENST00000538933 AKAP11Q9UKA4 1901 aa16.55■□□□□ 0.24
CLSTN3-208ENST00000538933 FAM155AB1AL88 458 aaPredicted RBP16.55■□□□□ 0.24
CLSTN3-208ENST00000538933 SNRPA1P09661 255 aaKnown RBP16.55■□□□□ 0.24
CLSTN3-208ENST00000538933 NUTM1Q86Y26 1132 aa16.55■□□□□ 0.24
CLSTN3-208ENST00000538933 ZC3H15Q8WU90 426 aaKnown RBP16.55■□□□□ 0.24
CLSTN3-208ENST00000538933 MKI67P46013 3256 aaKnown RBP16.55■□□□□ 0.24
CLSTN3-208ENST00000538933 GTF2E1P29083 439 aaPredicted RBP16.54■□□□□ 0.24
CLSTN3-208ENST00000538933 GMPSP49915 693 aaPredicted RBP16.54■□□□□ 0.24
CLSTN3-208ENST00000538933 NIM1KQ8IY84 436 aa16.54■□□□□ 0.24
CLSTN3-208ENST00000538933 CRAMP1Q96RY5 1269 aa16.54■□□□□ 0.24
CLSTN3-208ENST00000538933 DLK2Q6UY11 383 aa16.53■□□□□ 0.24
CLSTN3-208ENST00000538933 PHACTR3Q96KR7 559 aa16.53■□□□□ 0.24
CLSTN3-208ENST00000538933 VPS33BQ9H267 617 aa16.53■□□□□ 0.24
CLSTN3-208ENST00000538933 SAGE1Q9NXZ1 904 aa16.53■□□□□ 0.24
CLSTN3-208ENST00000538933 ZNRF3Q9ULT6 936 aa16.53■□□□□ 0.24
CLSTN3-208ENST00000538933 PPIP5K2O43314 1243 aa16.52■□□□□ 0.24
CLSTN3-208ENST00000538933 AOC3Q16853 763 aa16.52■□□□□ 0.24
CLSTN3-208ENST00000538933 CDC37L1Q7L3B6 337 aa16.52■□□□□ 0.24
CLSTN3-208ENST00000538933 MIER1Q8N108 512 aa16.52■□□□□ 0.24
CLSTN3-208ENST00000538933 RPGRQ92834 1020 aaKnown RBP16.52■□□□□ 0.24
CLSTN3-208ENST00000538933 NYXQ9GZU5 481 aa16.52■□□□□ 0.24
CLSTN3-208ENST00000538933 ZNF408Q9H9D4 720 aa16.52■□□□□ 0.24
CLSTN3-208ENST00000538933 MYBBP1AQ9BQG0 1328 aaKnown RBP16.51■□□□□ 0.23
CLSTN3-208ENST00000538933 PPEF1O14829 653 aaPredicted RBP16.51■□□□□ 0.23
CLSTN3-208ENST00000538933 HUNKP57058 714 aa16.51■□□□□ 0.23
CLSTN3-208ENST00000538933 C3orf67Q6ZVT6 689 aa16.51■□□□□ 0.23
CLSTN3-208ENST00000538933 TRPM4Q8TD43 1214 aa16.51■□□□□ 0.23
CLSTN3-208ENST00000538933 RTFDC1Q9BY42 306 aaPredicted RBP16.51■□□□□ 0.23
CLSTN3-208ENST00000538933 RNF186Q9NXI6 227 aa16.51■□□□□ 0.23
CLSTN3-208ENST00000538933 CDHR2Q9BYE9 1310 aa16.5■□□□□ 0.23
CLSTN3-208ENST00000538933 TCERG1O14776 1098 aaKnown RBP16.5■□□□□ 0.23
CLSTN3-208ENST00000538933 UBN2Q6ZU65 1347 aa16.49■□□□□ 0.23
CLSTN3-208ENST00000538933 SHTN1A0MZ66 631 aa16.49■□□□□ 0.23
CLSTN3-208ENST00000538933 ERVV-1B6SEH8 477 aa16.49■□□□□ 0.23
CLSTN3-208ENST00000538933 KIF23Q02241 960 aaPredicted RBP16.49■□□□□ 0.23
CLSTN3-208ENST00000538933 RGMBQ6NW40 437 aa16.49■□□□□ 0.23
CLSTN3-208ENST00000538933 USP48Q86UV5 1035 aa16.49■□□□□ 0.23
CLSTN3-208ENST00000538933 RBM17Q96I25 401 aaKnown RBP16.49■□□□□ 0.23
CLSTN3-208ENST00000538933 ATP6V0A2Q9Y487 856 aa16.49■□□□□ 0.23
CLSTN3-208ENST00000538933 U2SURPO15042 1029 aaKnown RBP16.48■□□□□ 0.23
CLSTN3-208ENST00000538933 TRPA1O75762 1119 aa16.48■□□□□ 0.23
CLSTN3-208ENST00000538933 SUSD4Q5VX71 490 aa16.48■□□□□ 0.23
CLSTN3-208ENST00000538933 HTTP42858 3142 aa16.48■□□□□ 0.23
CLSTN3-208ENST00000538933 LAMB4A4D0S4 1761 aa16.48■□□□□ 0.23
CLSTN3-208ENST00000538933 IBTKQ9P2D0 1353 aaPredicted RBP16.48■□□□□ 0.23
CLSTN3-208ENST00000538933 PPP2R1AP30153 589 aa16.47■□□□□ 0.23
CLSTN3-208ENST00000538933 CNOT7Q9UIV1 285 aaKnown RBP16.47■□□□□ 0.23
CLSTN3-208ENST00000538933 RAD17O75943 681 aa16.46■□□□□ 0.23
CLSTN3-208ENST00000538933 TTLL7Q6ZT98 887 aa16.46■□□□□ 0.23
CLSTN3-208ENST00000538933 CTU1Q7Z7A3 348 aaKnown RBP16.46■□□□□ 0.23
CLSTN3-208ENST00000538933 ZNF34Q8IZ26 560 aa16.46■□□□□ 0.23
CLSTN3-208ENST00000538933 CCDC102AQ96A19 550 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms