RNA–Protein interactions for RNA: ENST00000537983.1

NPIPB3-208, Transcript of nuclear pore complex interacting protein family member B3, human

TSL 4

Gene NPIPB3, Length 483 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPIPB3-208	ENST00000537983	TIMP2	P16035	220 aa		7.53	□□□□□ -1.2
NPIPB3-208	ENST00000537983	RASA1	P20936	1047 aa		7.53	□□□□□ -1.2
NPIPB3-208	ENST00000537983	ADD1	P35611	737 aa	Known RBP	7.53	□□□□□ -1.2
NPIPB3-208	ENST00000537983	HPS1	Q92902	700 aa		7.53	□□□□□ -1.2
NPIPB3-208	ENST00000537983	ITPKC	Q96DU7	683 aa		7.53	□□□□□ -1.2
NPIPB3-208	ENST00000537983	TESK2	Q96S53	571 aa		7.53	□□□□□ -1.2
NPIPB3-208	ENST00000537983	DNAAF2	Q9NVR5	837 aa	Known RBP	7.53	□□□□□ -1.2
NPIPB3-208	ENST00000537983	ARHGEF28	Q8N1W1	1705 aa	Known RBP	7.52	□□□□□ -1.2
NPIPB3-208	ENST00000537983	FER1L4	A9Z1Z3	1794 aa		7.52	□□□□□ -1.21
NPIPB3-208	ENST00000537983	MYOM1	P52179	1685 aa		7.52	□□□□□ -1.21
NPIPB3-208	ENST00000537983	QRICH2	Q9H0J4	1663 aa		7.52	□□□□□ -1.21
NPIPB3-208	ENST00000537983	KTN1	Q86UP2	1357 aa	Known RBP	7.52	□□□□□ -1.21
NPIPB3-208	ENST00000537983	DISP3	Q9P2K9	1392 aa		7.52	□□□□□ -1.21
NPIPB3-208	ENST00000537983	ATP1A2	P50993	1020 aa		7.52	□□□□□ -1.21
NPIPB3-208	ENST00000537983	WDR4	P57081	412 aa	Known RBP	7.52	□□□□□ -1.21
NPIPB3-208	ENST00000537983	TMF1	P82094	1093 aa		7.52	□□□□□ -1.21
NPIPB3-208	ENST00000537983	IDI1	Q13907	227 aa		7.52	□□□□□ -1.21
NPIPB3-208	ENST00000537983	LARP1	Q6PKG0	1096 aa	Known RBP	7.52	□□□□□ -1.21
NPIPB3-208	ENST00000537983	SIX5	Q8N196	739 aa		7.52	□□□□□ -1.21
NPIPB3-208	ENST00000537983	LARGE2	Q8N3Y3	721 aa		7.52	□□□□□ -1.21
NPIPB3-208	ENST00000537983	ZFAND3	Q9H8U3	227 aa		7.52	□□□□□ -1.21
NPIPB3-208	ENST00000537983	A2ML1	A8K2U0	1454 aa		7.51	□□□□□ -1.21
NPIPB3-208	ENST00000537983	ZIC2	O95409	532 aa	Predicted RBP	7.51	□□□□□ -1.21
NPIPB3-208	ENST00000537983	CBLB	Q13191	982 aa		7.51	□□□□□ -1.21
NPIPB3-208	ENST00000537983	STK32A	Q8WU08	396 aa		7.51	□□□□□ -1.21
NPIPB3-208	ENST00000537983	ZNF594	Q96JF6	807 aa	Predicted RBP	7.51	□□□□□ -1.21
NPIPB3-208	ENST00000537983	ESF1	Q9H501	851 aa	Known RBP	7.51	□□□□□ -1.21
NPIPB3-208	ENST00000537983	NOVA2	Q9UNW9	492 aa	Known RBP	7.51	□□□□□ -1.21
NPIPB3-208	ENST00000537983	ASXL1	Q8IXJ9	1541 aa		7.51	□□□□□ -1.21
NPIPB3-208	ENST00000537983	NLRP1	Q9C000	1473 aa		7.5	□□□□□ -1.21
NPIPB3-208	ENST00000537983	ZMYM3	Q14202	1370 aa		7.5	□□□□□ -1.21
NPIPB3-208	ENST00000537983	TNR	Q92752	1358 aa		7.5	□□□□□ -1.21
NPIPB3-208	ENST00000537983	ADH1A	P07327	375 aa		7.5	□□□□□ -1.21
NPIPB3-208	ENST00000537983		Q6ZVU0	165 aa		7.5	□□□□□ -1.21
NPIPB3-208	ENST00000537983	CYP2U1	Q7Z449	544 aa		7.5	□□□□□ -1.21
NPIPB3-208	ENST00000537983	ANKMY2	Q8IV38	441 aa		7.5	□□□□□ -1.21
NPIPB3-208	ENST00000537983	KDF1	Q8NAX2	398 aa	Predicted RBP	7.5	□□□□□ -1.21
NPIPB3-208	ENST00000537983	YTHDC1	Q96MU7	727 aa	Known RBP	7.5	□□□□□ -1.21
NPIPB3-208	ENST00000537983	PRKRIP1	Q9H875	184 aa	Predicted RBP	7.5	□□□□□ -1.21
NPIPB3-208	ENST00000537983	C14orf93	Q9H972	538 aa	Known RBP	7.5	□□□□□ -1.21
NPIPB3-208	ENST00000537983	UST	Q9Y2C2	406 aa		7.5	□□□□□ -1.21
NPIPB3-208	ENST00000537983	SETD1A	O15047	1707 aa	Known RBP	7.49	□□□□□ -1.21
NPIPB3-208	ENST00000537983	UBR1	Q8IWV7	1749 aa		7.49	□□□□□ -1.21
NPIPB3-208	ENST00000537983	C3	P01024	1663 aa		7.49	□□□□□ -1.21
NPIPB3-208	ENST00000537983	TMEM88B	A6NKF7	163 aa		7.49	□□□□□ -1.21
NPIPB3-208	ENST00000537983	AVP	P01185	164 aa		7.49	□□□□□ -1.21
NPIPB3-208	ENST00000537983	SCNN1D	P51172	638 aa		7.49	□□□□□ -1.21
NPIPB3-208	ENST00000537983	DPYD	Q12882	1025 aa		7.49	□□□□□ -1.21
NPIPB3-208	ENST00000537983	TMEM164	Q5U3C3	297 aa		7.49	□□□□□ -1.21
NPIPB3-208	ENST00000537983	TPCN2	Q8NHX9	752 aa		7.49	□□□□□ -1.21
NPIPB3-208	ENST00000537983	ALK	Q9UM73	1620 aa		7.49	□□□□□ -1.21
NPIPB3-208	ENST00000537983	DLC1	Q96QB1	1528 aa		7.48	□□□□□ -1.21
NPIPB3-208	ENST00000537983	TMEM229A	B2RXF0	380 aa		7.48	□□□□□ -1.21
NPIPB3-208	ENST00000537983	WASL	O00401	505 aa	Predicted RBP	7.48	□□□□□ -1.21
NPIPB3-208	ENST00000537983	NRG2	O14511	850 aa	Predicted RBP	7.48	□□□□□ -1.21
NPIPB3-208	ENST00000537983	CSB-PGBD3	P0DP91	1061 aa		7.48	□□□□□ -1.21
NPIPB3-208	ENST00000537983	MLEC	Q14165	292 aa		7.48	□□□□□ -1.21
NPIPB3-208	ENST00000537983	CCDC102B	Q68D86	513 aa		7.48	□□□□□ -1.21
NPIPB3-208	ENST00000537983	MEIOB	Q8N635	442 aa		7.48	□□□□□ -1.21
NPIPB3-208	ENST00000537983	POLR3GL	Q9BT43	218 aa		7.48	□□□□□ -1.21
NPIPB3-208	ENST00000537983	RIMS2	Q9UQ26	1411 aa		7.48	□□□□□ -1.21
NPIPB3-208	ENST00000537983	CENPJ	Q9HC77	1338 aa	Predicted RBP	7.48	□□□□□ -1.21
NPIPB3-208	ENST00000537983	KNDC1	Q76NI1	1749 aa		7.47	□□□□□ -1.21
NPIPB3-208	ENST00000537983	FAM187A	A6NFU0	413 aa		7.47	□□□□□ -1.21
NPIPB3-208	ENST00000537983	GFRA3	O60609	400 aa		7.47	□□□□□ -1.21
NPIPB3-208	ENST00000537983	STAU1	O95793	577 aa	Known RBP	7.47	□□□□□ -1.21
NPIPB3-208	ENST00000537983	GNRH1	P01148	92 aa		7.47	□□□□□ -1.21
NPIPB3-208	ENST00000537983	PSME1	Q06323	249 aa		7.47	□□□□□ -1.21
NPIPB3-208	ENST00000537983	ETNK1	Q9HBU6	452 aa		7.47	□□□□□ -1.21
NPIPB3-208	ENST00000537983	NRXN3	Q9Y4C0	1643 aa		7.47	□□□□□ -1.21
NPIPB3-208	ENST00000537983	RALBP1	Q15311	655 aa		7.46	□□□□□ -1.22
NPIPB3-208	ENST00000537983	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	7.46	□□□□□ -1.22
NPIPB3-208	ENST00000537983	FAM200A	Q8TCP9	573 aa		7.46	□□□□□ -1.22
NPIPB3-208	ENST00000537983	TRAIP	Q9BWF2	469 aa		7.46	□□□□□ -1.22
NPIPB3-208	ENST00000537983	ZNF358	Q9NW07	568 aa		7.46	□□□□□ -1.22
NPIPB3-208	ENST00000537983	PTPRM	P28827	1452 aa		7.46	□□□□□ -1.22
NPIPB3-208	ENST00000537983	PARD3	Q8TEW0	1356 aa		7.46	□□□□□ -1.22
NPIPB3-208	ENST00000537983	USP32	Q8NFA0	1604 aa		7.45	□□□□□ -1.22
NPIPB3-208	ENST00000537983	YTHDC2	Q9H6S0	1430 aa	Known RBP	7.45	□□□□□ -1.22
NPIPB3-208	ENST00000537983	CARNS1	A5YM72	827 aa		7.45	□□□□□ -1.22
NPIPB3-208	ENST00000537983	SFI1	A8K8P3	1242 aa		7.45	□□□□□ -1.22
NPIPB3-208	ENST00000537983		M0R2N6	131 aa		7.45	□□□□□ -1.22
NPIPB3-208	ENST00000537983	CAPN5	O15484	640 aa	Predicted RBP	7.45	□□□□□ -1.22
NPIPB3-208	ENST00000537983	DGAT1	O75907	488 aa		7.45	□□□□□ -1.22
NPIPB3-208	ENST00000537983	PTGIR	P43119	386 aa		7.45	□□□□□ -1.22
NPIPB3-208	ENST00000537983	GDF10	P55107	478 aa		7.45	□□□□□ -1.22
NPIPB3-208	ENST00000537983	SEC13	P55735	322 aa		7.45	□□□□□ -1.22
NPIPB3-208	ENST00000537983	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	7.45	□□□□□ -1.22
NPIPB3-208	ENST00000537983	AGBL1	Q96MI9	1066 aa		7.45	□□□□□ -1.22
NPIPB3-208	ENST00000537983	ARHGEF10L	Q9HCE6	1279 aa		7.45	□□□□□ -1.22
NPIPB3-208	ENST00000537983	SLAIN2	Q9P270	581 aa		7.45	□□□□□ -1.22
NPIPB3-208	ENST00000537983	HRH3	Q9Y5N1	445 aa		7.45	□□□□□ -1.22
NPIPB3-208	ENST00000537983	TULP4	Q9NRJ4	1543 aa		7.45	□□□□□ -1.22
NPIPB3-208	ENST00000537983	MYBBP1A	Q9BQG0	1328 aa	Known RBP	7.45	□□□□□ -1.22
NPIPB3-208	ENST00000537983	BRD4	O60885	1362 aa	Predicted RBP	7.45	□□□□□ -1.22
NPIPB3-208	ENST00000537983	NPC1L1	Q9UHC9	1359 aa		7.45	□□□□□ -1.22
NPIPB3-208	ENST00000537983	SLIT1	O75093	1534 aa		7.44	□□□□□ -1.22
NPIPB3-208	ENST00000537983	CPS1	P31327	1500 aa		7.44	□□□□□ -1.22
NPIPB3-208	ENST00000537983	IL2RA	P01589	272 aa		7.44	□□□□□ -1.22
NPIPB3-208	ENST00000537983	INHA	P05111	366 aa		7.44	□□□□□ -1.22

Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms